genome.fa.s24.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  222  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66445267--66445373	49	2.2	49	86	3	144	32	11	14	42	1.80
66446178--66446224	19	2.4	19	76	20	51	36	19	4	40	1.71
66448885--66448940	21	2.7	20	71	13	51	28	5	1	64	1.26
66449297--66449375	39	2.0	39	97	0	149	46	11	20	21	1.81
66453254--66453448	98	2.0	98	96	0	363	36	24	10	28	1.89
66461998--66462050	27	1.9	28	88	3	81	64	0	1	33	1.05
66462010--66462050	17	2.3	18	84	15	59	68	0	2	29	1.03
66461996--66462058	27	2.3	27	81	5	74	60	0	3	36	1.13
66462183--66462228	3	15.3	3	82	8	58	60	2	0	36	1.09
66463728--66463982	45	5.7	45	72	9	180	27	25	15	31	1.96
66463703--66464016	89	3.5	89	83	0	421	27	25	14	31	1.95
66470713--66470767	3	18.3	3	78	14	60	61	1	1	34	1.17
66474102--66474135	15	2.2	16	89	5	52	64	0	0	35	0.94
66479475--66479499	11	2.3	11	100	0	50	36	8	0	56	1.29
66484311--66484358	24	2.0	24	87	0	69	37	4	10	47	1.57
66491475--66491507	12	2.8	12	90	0	57	30	0	0	69	0.88
66495161--66495197	15	2.3	17	81	13	51	64	0	0	35	0.94
66495163--66495200	16	2.4	16	91	4	60	63	0	0	36	0.95
66495163--66495200	8	4.9	8	80	6	51	63	0	0	36	0.95
66497130--66497168	21	1.9	21	89	5	62	23	2	2	71	1.10
66497125--66497175	21	2.5	20	74	6	57	29	1	1	66	1.13
66497125--66497180	20	2.7	21	72	10	53	28	3	1	66	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66497502--66497535	3	11.3	3	100	0	68	67	0	0	32	0.91
66499458--66499511	25	2.2	25	80	12	58	33	0	3	62	1.12
66500767--66500804	20	1.9	20	88	0	58	44	5	5	44	1.49
66507728--66507752	13	1.9	13	100	0	50	16	0	0	84	0.63
66508588--66508621	17	2.0	17	94	0	59	44	50	0	5	1.26
66513227--66513260	17	2.0	17	94	0	59	44	50	0	5	1.26
66514272--66514304	10	3.0	11	91	8	50	18	9	3	69	1.28
66514993--66515030	3	12.7	3	94	0	67	34	0	2	63	1.09
66515154--66515214	27	2.2	27	82	5	68	37	8	3	50	1.48
66516091--66516124	2	17.0	2	100	0	68	50	0	0	50	1.00
66517763--66517797	3	11.7	3	100	0	70	68	0	0	31	0.90
66529102--66529212	49	2.3	49	85	3	143	33	10	13	42	1.79
66542085--66542154	28	2.5	29	88	4	99	40	11	1	47	1.49
66543630--66543668	19	2.0	21	85	10	55	23	0	10	66	1.22
66543732--66543772	3	13.7	3	94	0	73	0	2	31	65	1.05
66549445--66549598	4	38.0	4	73	20	108	0	28	0	70	0.92
66549413--66549607	40	4.8	42	79	17	200	0	31	0	68	0.94
66549454--66549552	44	2.2	45	85	8	141	1	27	0	71	0.92
66549409--66549595	82	2.4	79	86	7	249	0	29	0	69	0.93
66549445--66549607	48	3.3	48	77	16	149	0	30	0	69	0.93
66549719--66549774	29	1.9	29	92	0	94	51	0	5	42	1.24
66549725--66549784	29	2.1	29	87	6	86	50	1	5	43	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66552523--66552559	16	2.4	16	86	8	51	32	0	5	62	1.18
66563407--66563431	13	1.9	13	100	0	50	32	16	16	36	1.90
66563910--66563942	13	2.5	13	90	0	57	39	27	0	33	1.57
66568330--66568358	2	14.5	2	100	0	58	48	0	0	51	1.00
66569532--66569563	3	10.7	3	100	0	64	31	34	0	34	1.58
66585159--66585193	15	2.3	15	95	5	61	51	0	0	48	1.00
66594930--66594986	26	2.2	26	84	12	73	40	0	1	57	1.09
66599805--66599847	13	3.3	13	81	12	61	9	0	11	79	0.95
66607260--66607323	27	2.3	26	80	15	67	40	1	1	56	1.18
66616763--66616792	12	2.4	13	94	5	53	33	0	3	63	1.11
66617876--66617939	20	3.2	20	78	12	71	60	6	0	32	1.21
66617912--66617966	25	2.1	25	86	6	74	60	3	0	36	1.15
66617871--66617998	20	6.2	20	72	15	66	66	3	0	28	1.15
66617944--66617991	10	4.7	10	82	12	62	75	2	2	20	1.02
66617944--66617991	21	2.3	20	86	10	62	75	2	2	20	1.02
66617956--66617998	10	4.6	9	86	13	52	76	0	2	20	0.89
66628243--66628267	7	3.6	7	100	0	50	88	0	0	12	0.53
66632957--66633015	29	2.0	29	100	0	118	23	16	13	45	1.83
66638685--66638722	21	1.9	20	89	10	60	52	0	2	44	1.14
66645832--66645878	21	2.2	22	92	3	78	21	38	19	21	1.94
66652274--66652301	14	2.0	14	100	0	56	71	7	21	0	1.09
66660653--66660728	22	3.2	22	69	24	64	47	1	1	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66664677--66664718	20	2.1	20	90	0	66	30	0	19	50	1.48
66669049--66669089	21	1.9	22	90	5	66	65	2	0	31	1.05
66669530--66669572	22	2.0	21	86	4	59	44	0	0	55	0.99
66669742--66669850	42	2.6	42	88	2	157	35	23	19	21	1.96
66669873--66669912	11	3.7	11	96	3	73	27	25	10	37	1.88
66672991--66673803	112	7.3	112	94	1	1375	25	27	17	29	1.98
66673759--66673866	40	2.7	40	94	0	189	19	30	14	35	1.92
66675568--66675597	15	2.1	15	93	6	53	36	0	6	56	1.26
66692548--66692580	10	3.0	11	91	8	50	54	0	0	45	0.99
66692553--66692616	27	2.3	26	80	15	67	42	0	1	56	1.09
66702357--66702405	3	16.7	3	82	4	64	61	0	34	4	1.15
66706452--66706503	22	2.4	21	81	9	61	69	1	1	26	1.10
66706465--66706504	10	3.9	10	81	18	55	72	0	2	25	0.97
66718147--66718205	29	2.0	29	100	0	118	23	16	13	45	1.83
66722299--66722391	48	1.9	48	87	8	136	40	27	12	18	1.87
66732490--66732532	13	3.3	13	78	12	52	11	0	9	79	0.95
66739870--66739902	10	3.0	11	91	8	50	54	0	0	45	0.99
66739875--66739938	27	2.3	26	80	15	67	42	0	1	56	1.09
66748593--66748649	28	2.0	28	100	0	114	36	3	42	17	1.67
66757364--66757435	37	1.9	37	86	5	101	43	9	9	37	1.71
66766985--66767026	20	2.1	20	86	8	59	33	2	7	57	1.39
66779255--66779302	25	2.0	24	83	4	60	50	2	4	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66790368--66790419	27	1.9	27	96	0	95	67	1	11	19	1.31
66797449--66797495	21	2.2	20	79	17	51	21	36	2	40	1.65
66797444--66797488	23	1.9	24	82	13	58	24	33	2	40	1.68
66820671--66820731	4	15.0	4	77	19	56	21	4	0	73	1.01
66820673--66820727	18	2.9	19	77	15	60	20	5	0	74	1.01
66820674--66820739	22	2.8	24	84	13	75	21	6	0	72	1.05
66820701--66820747	22	2.1	22	84	7	60	25	4	4	65	1.29
66821657--66821711	15	3.4	16	80	12	60	74	1	1	21	1.01
66822259--66822293	15	2.4	15	90	4	54	48	0	8	42	1.33
66828990--66829030	21	2.0	21	81	18	50	31	19	26	21	1.97
66842260--66842305	18	2.8	18	84	15	64	0	30	41	28	1.56
66844058--66844100	13	3.1	14	84	12	54	60	0	0	39	0.97
66847682--66847716	16	2.2	16	100	0	70	31	17	5	45	1.71
66854571--66854619	26	2.0	24	88	11	73	24	14	4	57	1.55
66866576--66866647	36	2.0	36	91	0	117	27	47	0	25	1.52
66871872--66871924	4	13.2	4	100	0	106	24	0	24	50	1.49
66872059--66872098	4	10.0	4	100	0	80	25	0	25	50	1.50
66871744--66872098	187	1.9	188	99	0	703	35	17	15	30	1.92
66872752--66873167	44	9.1	45	68	11	204	30	19	17	32	1.95
66872901--66873167	133	2.0	132	83	5	333	31	20	16	31	1.94
66872999--66873169	89	1.9	89	80	2	200	30	22	15	30	1.95
66873251--66873351	44	2.3	44	81	5	114	26	18	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66878017--66878057	21	2.0	21	90	0	64	29	21	29	19	1.98
66886989--66887045	6	10.3	6	78	14	61	50	0	0	49	1.00
66901627--66901733	50	2.1	50	100	0	214	15	18	12	53	1.73
66907378--66907426	23	2.3	21	86	10	64	22	22	0	55	1.44
66907388--66907433	23	2.0	23	100	0	92	21	21	0	56	1.42
66907393--66907444	23	2.5	20	84	12	61	21	17	1	59	1.47
66907968--66908136	21	8.1	21	68	6	94	45	17	19	17	1.86
66907987--66908137	42	3.6	40	77	7	140	45	16	19	18	1.86
66907970--66908086	63	1.9	61	84	7	155	44	17	21	17	1.87
66908471--66908512	17	2.4	18	80	4	50	50	7	0	42	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226