genome.fa.s24.2.7.7.80.10.50.1000.226.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  226  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68034637--68034723	18	4.8	18	80	10	97	29	24	12	33	1.92
68034631--68034723	36	2.6	36	89	3	143	29	23	13	33	1.94
68040954--68040988	12	3.0	12	95	4	63	25	25	0	48	1.51
68042284--68042722	216	2.0	216	95	1	792	29	19	18	32	1.96
68045997--68046289	25	11.8	24	86	5	251	31	0	21	46	1.54
68045997--68046285	50	6.0	50	86	9	361	31	0	21	46	1.54
68046004--68046285	75	3.9	74	83	10	350	31	0	21	46	1.54
68046852--68046889	19	2.0	20	84	5	51	34	5	21	39	1.76
68073487--68073527	21	2.0	21	90	0	64	19	29	21	29	1.98
68093930--68093989	31	1.9	31	86	6	86	45	3	5	46	1.41
68094997--68095047	15	2.9	18	77	19	63	33	23	11	31	1.91
68094990--68095042	15	3.3	15	76	19	61	30	26	9	33	1.88
68107623--68107700	39	2.0	39	97	0	147	24	14	28	33	1.94
68108726--68108767	10	4.3	10	84	6	50	28	0	4	66	1.12
68108715--68108771	18	3.1	18	77	5	60	33	0	3	63	1.12
68109218--68109257	11	3.6	11	100	0	80	60	0	0	40	0.97
68109746--68109800	21	2.6	22	82	5	69	50	3	0	45	1.19
68111278--68111308	14	2.1	15	94	5	55	74	0	0	25	0.82
68111600--68111632	15	2.2	15	100	0	66	66	0	9	24	1.20
68111629--68111678	26	2.0	25	84	4	64	56	2	10	32	1.44
68112231--68112644	129	3.2	129	90	1	607	27	21	21	29	1.98
68112283--68112645	44	8.4	44	72	8	235	26	20	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68112147--68112737	44	13.6	44	71	10	139	26	21	21	30	1.98
68112865--68113017	50	3.1	49	68	7	128	23	17	24	33	1.96
68112771--68113096	100	3.3	99	84	3	406	23	19	23	33	1.97
68112981--68113324	125	2.7	124	91	4	523	25	18	23	32	1.97
68114576--68114627	24	2.2	24	89	0	77	38	1	7	51	1.42
68114593--68114638	24	1.9	24	86	8	67	39	4	10	45	1.59
68122702--68122736	15	2.4	15	90	4	54	34	8	0	57	1.29
68124374--68124408	3	11.7	3	100	0	70	34	0	0	65	0.93
68140156--68140458	106	2.8	106	85	1	401	31	17	18	33	1.94
68145649--68145723	33	2.2	34	86	11	102	40	5	8	46	1.56
68152515--68152615	49	2.1	49	81	7	118	56	0	4	38	1.21
68152940--68152975	3	12.7	3	88	11	58	30	0	0	69	0.89
68152933--68152974	14	3.1	13	83	12	57	28	0	2	69	1.01
68152940--68152975	17	2.1	17	94	0	63	30	0	0	69	0.89
68153578--68153690	44	2.6	44	95	0	199	34	30	15	20	1.93
68153666--68153857	84	2.3	83	89	2	280	34	25	17	23	1.96
68153667--68153856	41	4.6	41	83	6	222	34	25	17	23	1.96
68171870--68171918	3	16.3	3	100	0	98	34	0	32	32	1.58
68172588--68172870	144	2.0	144	92	1	469	27	18	23	30	1.97
68176534--68176598	29	2.2	29	97	0	121	27	20	23	29	1.98
68178991--68179024	17	1.9	18	88	5	52	32	2	5	58	1.37
68185416--68185475	19	3.3	19	63	13	54	45	15	23	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68185406--68185475	35	2.0	35	97	0	131	44	14	24	17	1.85
68189564--68189591	12	2.3	12	100	0	56	78	0	0	21	0.75
68193876--68193913	20	1.9	20	94	0	67	63	0	0	36	0.95
68201374--68201418	22	2.0	23	82	4	56	46	0	0	53	1.00
68203284--68203317	17	2.0	17	94	0	59	44	50	0	5	1.26
68207913--68207946	17	2.0	17	94	0	59	44	50	0	5	1.26
68218061--68218197	68	2.0	68	100	0	274	43	10	10	36	1.73
68218519--68218546	3	9.3	3	100	0	56	32	0	35	32	1.58
68221003--68221043	18	2.2	20	86	8	59	41	0	2	56	1.13
68222764--68222797	17	2.0	17	94	0	59	44	50	0	5	1.26
68227404--68227437	17	2.0	17	94	0	59	44	50	0	5	1.26
68233350--68233396	24	2.0	24	83	8	60	21	4	2	72	1.12
68238597--68238660	29	2.2	30	83	8	78	29	9	7	53	1.61
68241660--68241812	76	2.0	76	100	0	306	38	13	18	30	1.88
68244194--68244265	29	2.5	28	80	10	83	37	12	11	38	1.79
68268987--68269057	33	2.2	32	75	18	76	30	8	15	45	1.76
68272329--68272369	21	2.0	21	86	9	59	2	24	2	70	1.11
68273089--68273165	30	2.6	29	78	8	84	33	19	3	42	1.69
68275635--68275880	120	2.0	120	97	0	465	21	23	20	34	1.97
68279526--68279573	21	2.5	18	83	10	60	27	0	2	70	0.98
68280137--68280184	21	2.3	20	80	13	53	56	2	0	41	1.11
68296317--68296389	31	2.4	30	80	11	85	54	6	0	38	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68296326--68296385	32	1.9	31	86	10	86	53	8	0	38	1.31
68303265--68303291	9	3.0	9	100	0	54	22	0	0	77	0.76
68303281--68303321	20	2.0	21	90	4	66	36	0	4	58	1.20
68304903--68304935	15	2.2	15	89	10	50	72	0	6	21	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226

The End!