genome.fa.s24.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  171  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52593431--52593472	17	2.4	18	80	4	50	16	4	7	71	1.26
52593882--52593946	32	2.1	32	91	2	105	47	9	9	33	1.67
52600059--52600123	32	2.1	32	94	2	114	46	13	9	30	1.75
52601172--52601282	58	1.9	58	81	7	136	33	9	2	54	1.46
52601319--52601374	3	18.3	3	96	3	103	32	0	1	66	1.03
52601426--52601450	13	1.9	13	100	0	50	24	0	0	76	0.80
52603998--52604044	24	2.0	24	91	0	76	38	2	0	59	1.09
52604491--52604547	25	2.2	25	84	9	71	36	14	5	43	1.67
52604831--52604855	13	1.9	13	100	0	50	8	0	32	60	1.26
52607447--52607523	3	25.3	3	79	12	86	29	5	2	62	1.30
52609588--52609631	19	2.3	20	84	7	56	27	20	11	40	1.86
52611718--52611772	9	6.3	9	91	8	96	78	10	0	10	0.98
52611719--52611772	17	3.2	17	94	5	92	77	11	0	11	0.99
52611718--52611772	26	2.1	26	100	0	110	78	10	0	10	0.98
52612756--52612802	21	2.2	21	92	0	76	27	10	36	25	1.89
52613887--52614484	88	6.7	88	90	3	860	27	23	23	24	2.00
52613887--52614383	270	1.8	270	95	0	895	27	24	24	23	2.00
52614485--52615106	175	3.6	175	93	0	983	31	19	20	28	1.97
52614651--52615108	85	5.3	84	69	13	255	30	19	21	27	1.98
52614942--52615235	129	2.3	129	93	0	498	29	18	22	28	1.97
52615073--52615415	88	4.0	84	73	8	294	31	18	21	28	1.97
52615071--52615410	175	1.9	175	92	0	563	30	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52615246--52615501	129	2.0	129	94	0	449	32	18	21	28	1.97
52615246--52615566	129	2.5	129	88	1	437	30	20	20	29	1.97
52614767--52615509	304	2.4	304	95	0	1324	30	19	21	28	1.97
52617699--52617740	21	2.0	21	100	0	84	42	4	9	42	1.58
52618163--52618222	18	3.4	17	81	11	59	30	5	1	63	1.25
52618186--52618253	3	22.3	3	77	14	68	29	5	2	61	1.34
52618291--52618326	16	2.2	17	95	5	65	50	0	0	50	1.00
52621843--52622414	286	2.0	286	94	0	1002	36	15	19	28	1.93
52632292--52632360	6	10.7	6	75	20	59	81	7	1	10	0.94
52632292--52632361	13	5.3	13	80	10	79	81	7	1	10	0.93
52632292--52632384	7	13.7	7	71	17	54	81	6	3	8	0.96
52632297--52632334	18	2.1	18	95	5	67	84	5	0	10	0.77
52632292--52632383	29	3.1	29	76	6	78	82	6	3	7	0.93
52632386--52632459	3	24.7	3	72	10	53	62	6	4	27	1.39
52632382--52632420	12	3.2	12	88	3	60	58	10	0	30	1.31
52632430--52632480	18	2.9	18	83	13	54	66	5	5	21	1.35
52632604--52632657	15	3.6	14	83	14	63	74	0	3	22	0.98
52634243--52634324	30	2.7	30	75	0	74	23	30	30	15	1.96
52637978--52638050	18	4.1	18	73	3	58	42	16	20	20	1.89
52645647--52645748	47	2.3	43	84	6	123	60	5	5	27	1.43
52645829--52645861	15	2.2	15	100	0	66	48	6	6	39	1.53
52645913--52645952	20	2.0	20	100	0	80	55	0	20	25	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52653347--52653391	17	2.6	17	93	6	74	73	0	0	26	0.84
52653342--52653388	10	5.0	10	77	15	55	68	0	0	31	0.90
52656968--52657414	171	2.6	170	92	1	725	31	12	14	41	1.83
52659775--52659814	14	3.1	14	80	20	52	50	5	22	22	1.68
52662943--52663658	356	2.0	356	97	0	1351	35	19	13	31	1.90
52668753--52669091	182	1.9	180	85	3	466	29	18	22	28	1.98
52668752--52669410	44	14.8	44	70	11	335	30	18	20	30	1.96
52670587--52670621	5	7.0	5	100	0	70	20	0	0	80	0.72
52670802--52670880	26	3.1	26	81	1	97	24	6	10	59	1.53
52676077--52676929	82	10.4	82	91	3	1185	22	20	25	32	1.98
52676951--52677743	99	8.0	99	81	5	929	26	22	21	29	1.99
52676951--52677734	199	3.9	199	94	1	1360	26	22	21	29	1.99
52676951--52677734	397	2.0	398	93	1	1360	26	22	21	29	1.99
52676947--52677746	50	16.1	50	65	11	336	26	22	21	29	1.99
52677791--52678196	44	9.2	44	77	5	401	30	26	15	27	1.96
52677791--52678196	88	4.6	88	87	2	505	30	26	15	27	1.96
52677791--52678168	175	2.1	176	87	2	535	29	26	14	28	1.95
52677791--52678194	132	3.1	131	82	2	479	30	26	15	27	1.96
52681035--52681221	62	3.0	62	91	0	284	31	8	20	39	1.83
52685319--52686142	82	10.0	82	94	1	1368	22	19	25	32	1.97
52686146--52686945	199	4.0	199	92	1	1268	26	21	21	30	1.98
52686150--52686935	397	2.0	397	91	2	1274	26	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52686253--52686910	50	13.2	51	64	14	250	26	21	21	30	1.98
52686990--52687395	44	9.2	44	77	5	410	30	26	15	28	1.96
52686990--52687367	175	2.1	176	87	2	535	29	26	14	28	1.95
52686990--52687395	88	4.6	88	87	2	505	30	26	15	28	1.96
52686990--52687393	132	3.1	131	82	2	479	30	26	15	27	1.96
52688429--52688462	12	2.7	13	90	4	52	5	11	0	82	0.83
52690236--52690422	62	3.0	62	88	1	259	31	8	19	41	1.81
52699359--52699805	171	2.6	171	92	1	727	31	12	14	41	1.83
52702159--52702198	14	3.1	14	80	20	52	50	5	22	22	1.68
52705973--52706013	21	2.0	20	85	4	55	56	14	0	29	1.39
52711292--52711551	45	5.7	45	72	13	129	30	18	24	26	1.98
52711202--52711694	181	2.7	180	83	7	572	31	17	22	28	1.97
52711252--52711810	44	12.4	44	71	12	298	30	17	22	29	1.97
52711226--52711700	182	2.6	180	84	6	563	31	17	22	29	1.96
52713786--52713864	26	3.1	26	81	1	97	24	6	10	59	1.53
52724289--52724333	16	2.6	17	86	6	56	73	2	0	24	0.95
52724305--52724342	16	2.4	16	82	4	51	68	2	2	26	1.16
52737937--52738554	171	3.6	171	94	0	1040	31	12	14	41	1.83
52748983--52749673	44	15.3	45	71	12	391	31	18	21	29	1.97
52748890--52749551	44	14.8	43	71	12	406	30	18	21	29	1.97
52748893--52749545	181	3.6	180	80	8	575	30	18	21	29	1.97
52748963--52749425	182	2.6	183	83	5	532	31	17	21	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52749992--52750021	15	2.0	15	93	0	51	56	13	6	23	1.60
52750960--52750988	10	2.7	11	89	10	51	17	6	0	75	1.01
52751055--52751083	8	3.6	8	100	0	58	44	0	0	55	0.99
52751487--52751565	26	3.1	26	79	1	88	24	7	10	58	1.57
52761939--52761968	10	2.8	11	90	10	53	73	0	0	26	0.84
52761961--52761998	16	2.4	16	82	4	51	68	2	2	26	1.16
52765579--52766023	169	2.6	170	88	3	664	32	12	13	41	1.82
52774882--52774906	13	1.9	13	100	0	50	28	8	16	48	1.74
52785117--52785178	30	2.0	31	81	9	74	22	40	0	37	1.54
52785456--52785494	19	2.2	18	90	9	62	20	35	0	43	1.52
52791699--52791910	42	5.5	41	71	21	188	22	17	27	32	1.96
52791741--52791949	33	5.8	32	71	21	130	20	19	27	33	1.96
52791662--52791947	75	3.8	75	90	2	441	22	18	27	32	1.97
52799199--52799429	102	2.3	102	93	1	401	19	18	29	32	1.96
52800551--52800655	38	2.9	36	85	10	135	62	0	2	34	1.10
52800551--52800604	11	4.9	11	73	8	56	59	0	1	38	1.08
52802644--52802693	18	2.8	17	73	8	55	42	0	4	54	1.19
52804025--52804070	22	2.1	22	100	0	92	21	23	0	54	1.45
52805985--52806040	24	2.3	24	90	0	94	16	3	35	44	1.65
52810747--52810790	18	2.5	17	78	7	61	61	0	4	34	1.16
52829879--52830043	90	1.8	90	98	0	321	32	10	27	28	1.91
52835328--52835539	40	5.3	40	86	3	268	23	20	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52844363--52844421	30	2.0	30	83	12	77	28	27	15	28	1.96
52844327--52844456	66	2.0	66	80	6	147	31	26	13	29	1.93
52851748--52851775	10	2.8	10	100	0	56	53	17	10	17	1.72
52859427--52859474	17	2.8	17	87	6	62	29	0	2	68	1.01
52874399--52874644	44	5.6	42	75	8	192	28	22	20	28	1.99
52874399--52874653	88	2.9	89	84	2	361	28	21	20	29	1.98
52874552--52875002	182	2.5	180	81	6	493	29	22	16	31	1.96
52874523--52874980	181	2.5	179	80	6	487	29	22	16	31	1.96
52879634--52879691	22	2.7	21	84	7	80	32	3	18	44	1.67
52879644--52879688	23	2.0	22	91	4	72	31	4	17	46	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226