genome.fa.s24.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  213  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63525482--63525786	72	4.2	72	88	0	457	36	18	13	31	1.90
63525482--63525786	144	2.1	144	94	1	531	36	18	13	31	1.90
63531647--63531862	119	1.8	119	86	3	317	32	10	18	38	1.84
63536936--63537392	72	6.3	72	83	5	593	36	19	14	30	1.91
63536935--63537392	144	3.2	143	92	2	767	36	19	13	30	1.91
63539261--63539285	12	2.1	12	100	0	50	68	0	0	32	0.90
63539770--63539807	17	2.2	18	90	4	60	63	15	2	18	1.43
63539982--63540040	27	2.1	28	84	3	75	57	0	6	35	1.25
63540309--63540342	18	1.9	18	88	5	52	61	2	2	32	1.26
63540282--63540330	24	2.0	26	84	8	66	65	2	4	28	1.22
63540353--63540390	19	2.1	19	85	9	53	47	2	7	42	1.46
63540518--63540607	23	3.8	23	83	4	108	57	5	4	32	1.42
63545347--63545587	72	3.3	72	83	4	335	36	19	14	29	1.91
63556263--63556370	56	2.0	53	80	8	119	30	16	2	50	1.60
63558609--63558644	14	2.6	14	95	0	63	19	22	13	44	1.86
63559997--63560055	10	5.8	10	86	9	66	84	3	6	5	0.85
63559994--63560055	21	3.0	22	79	13	69	82	4	8	4	0.95
63560487--63560534	19	2.6	19	86	3	62	79	2	14	4	0.98
63560486--63560535	26	1.9	26	84	8	66	80	2	14	4	0.95
63561507--63562203	86	8.1	86	92	1	1081	26	23	23	26	2.00
63562229--63562424	45	4.4	46	67	14	131	27	17	24	31	1.97
63562259--63562455	46	4.4	46	68	14	158	24	18	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63562149--63562560	134	3.1	134	93	0	691	27	19	22	29	1.98
63564366--63564473	56	2.0	53	80	8	119	30	16	2	50	1.60
63565748--63565888	70	2.0	70	97	0	264	45	9	7	37	1.65
63569934--63569965	16	2.0	16	100	0	64	18	31	12	37	1.88
63573298--63573333	18	1.9	18	88	5	54	58	2	0	38	1.13
63578698--63578784	34	2.6	34	90	0	129	52	12	10	24	1.70
63579089--63579148	30	2.0	30	93	0	102	58	11	3	26	1.49
63587499--63587581	3	27.0	3	80	16	82	32	3	1	62	1.20
63588185--63588320	72	1.9	72	90	0	218	29	17	19	33	1.95
63589057--63589081	7	3.6	7	100	0	50	60	0	28	12	1.32
63589545--63589589	13	3.1	15	81	15	58	31	0	13	55	1.38
63589547--63589592	15	3.1	15	76	14	51	34	0	13	52	1.40
63601582--63601631	23	2.1	24	85	10	68	74	2	8	16	1.15
63603819--63603898	28	2.8	29	81	9	83	41	6	3	48	1.46
63603853--63603913	31	2.0	31	86	0	86	37	6	3	52	1.44
63605983--63606012	3	10.0	3	100	0	60	66	0	0	33	0.92
63620982--63621015	17	2.0	17	94	0	59	44	50	0	5	1.26
63625610--63625643	17	2.0	17	94	0	59	44	50	0	5	1.26
63629624--63629927	72	4.2	72	87	0	437	36	20	13	30	1.91
63629624--63629927	144	2.1	144	94	1	529	36	20	13	30	1.91
63631693--63631874	3	61.0	3	71	9	95	35	3	4	57	1.35
63634792--63634848	22	2.7	21	76	12	55	33	0	3	63	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63647895--63647947	24	2.2	24	89	0	79	58	3	1	35	1.27
63649289--63649381	18	5.2	18	85	0	132	29	23	15	32	1.95
63659807--63659862	23	2.4	23	82	5	69	55	3	3	37	1.35
63660061--63660129	23	3.2	23	79	16	69	66	0	8	24	1.19
63660093--63660127	15	2.3	15	90	9	54	65	0	5	28	1.15
63660760--63660817	5	11.4	5	77	18	50	79	0	5	15	0.90
63660771--63660814	16	2.7	16	89	3	61	81	0	4	13	0.83
63660766--63660817	23	2.3	22	83	9	61	80	0	3	15	0.85
63665388--63665461	36	2.1	36	97	0	139	41	10	17	29	1.83
63669088--63669125	15	2.3	16	86	13	51	73	7	0	18	1.06
63675057--63675390	165	2.0	167	94	2	582	27	18	21	32	1.97
63675877--63676023	71	2.1	71	100	0	294	42	16	12	29	1.84
63687221--63687247	4	6.8	4	100	0	54	77	0	0	22	0.76
63687785--63688340	306	1.8	306	94	0	986	41	16	10	31	1.83
63697309--63697456	72	2.1	72	85	2	199	37	18	14	29	1.91
63705750--63705774	7	3.6	7	100	0	50	88	0	12	0	0.53
63706345--63706399	28	2.0	28	96	0	101	29	9	16	45	1.78
63706446--63706503	29	2.0	29	86	6	82	37	24	6	31	1.82
63709168--63709220	24	2.2	24	82	0	70	56	3	3	35	1.35
63709174--63709219	24	1.9	24	90	0	74	52	4	4	39	1.41
63710924--63710957	16	2.1	16	88	0	50	50	14	17	17	1.79
63713754--63713794	21	2.0	21	90	0	64	29	21	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63715700--63715733	16	2.1	16	88	0	50	50	14	17	17	1.79
63721926--63721994	23	3.2	23	79	16	69	66	0	8	24	1.19
63721958--63721992	15	2.3	15	90	9	54	65	0	5	28	1.15
63725657--63725704	25	2.0	25	91	4	80	29	0	0	70	0.87
63725658--63725702	16	2.8	18	78	21	55	28	0	0	71	0.87
63729252--63729299	25	2.0	25	91	4	80	29	0	0	70	0.87
63729253--63729297	16	2.8	18	78	21	55	28	0	0	71	0.87
63732420--63732462	23	1.9	23	90	4	70	30	9	4	55	1.52
63736260--63736286	2	13.5	2	100	0	54	48	0	0	51	1.00
63741406--63741494	31	3.0	29	73	14	81	41	12	11	34	1.78
63744500--63744540	21	2.0	21	81	18	50	21	26	19	31	1.97
63755428--63755470	22	2.0	21	81	4	50	34	37	0	27	1.57
63756801--63756843	15	2.8	15	80	16	52	69	0	0	30	0.88
63759497--63759911	127	3.3	126	85	3	550	32	15	22	29	1.95
63761663--63761702	21	1.9	21	94	0	71	32	12	5	50	1.62
63766900--63766940	21	2.0	21	81	18	50	31	19	26	21	1.97
63769191--63769407	120	1.8	120	87	1	326	32	11	17	39	1.85
63772203--63772591	72	5.4	72	85	0	544	36	19	14	29	1.91
63772207--63772591	144	2.7	144	93	0	662	36	19	14	29	1.91
63773819--63773876	26	2.2	26	81	9	73	62	3	27	6	1.37
63780189--63780239	16	3.1	16	78	15	59	70	0	1	27	0.98
63780209--63780246	16	2.4	17	82	13	53	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63782639--63782684	24	1.9	24	95	0	83	26	23	28	21	1.99
63782816--63782867	23	2.2	24	80	6	63	42	9	5	42	1.61
63784671--63784706	19	1.9	19	88	5	56	75	5	0	19	1.00
63795349--63795502	75	2.1	75	97	0	290	37	20	19	22	1.94
63799838--63799953	61	1.9	60	82	1	142	36	16	12	35	1.86
63800544--63800595	25	2.1	25	85	3	70	59	0	1	38	1.08
63802362--63802407	19	2.3	21	85	7	60	4	26	21	47	1.69
63804475--63804647	72	2.4	72	85	0	247	36	18	13	31	1.89
63805081--63805239	72	2.2	72	95	0	282	36	18	18	26	1.94
63817010--63817043	16	2.1	16	88	0	50	23	32	20	23	1.98
63825519--63825608	28	3.2	27	78	12	85	65	2	3	28	1.20
63825551--63825619	18	3.8	17	79	11	66	62	1	5	30	1.27
63825541--63825628	28	3.1	28	79	6	72	65	1	5	27	1.22
63825888--63825947	31	1.9	31	86	6	86	33	3	3	60	1.30
63828397--63828463	27	2.5	27	82	4	73	22	7	31	38	1.82
63830825--63830894	35	2.0	35	94	0	122	32	32	12	21	1.91
63832963--63833012	17	2.7	20	78	18	70	10	0	44	46	1.37
63837601--63837650	17	2.7	20	78	18	70	10	0	44	46	1.37
63840832--63840875	23	1.9	23	85	0	61	43	13	18	25	1.86
63846986--63847044	27	2.1	28	78	12	68	35	5	3	55	1.38
63853877--63853983	12	8.8	12	72	13	60	52	8	14	25	1.69
63859678--63859724	22	2.2	22	85	7	62	63	0	2	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63863346--63863422	37	2.1	37	97	0	145	59	5	5	29	1.41
63863352--63863415	10	5.5	11	71	21	51	62	3	6	28	1.34
63863485--63863550	9	7.3	9	76	5	62	31	1	1	65	1.11
63863455--63863549	45	2.1	45	82	9	113	33	2	2	62	1.19
63863485--63863554	27	2.6	28	82	8	83	35	1	1	61	1.14
63863473--63863553	8	9.4	8	73	15	54	38	2	1	58	1.20
63870846--63870874	15	2.0	15	93	6	51	13	34	3	48	1.60
63876492--63876528	18	2.1	18	89	0	56	43	0	0	56	0.99
63876493--63876535	22	2.0	22	86	9	61	44	0	0	55	0.99
63879571--63879604	13	2.6	13	82	17	52	29	2	0	67	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226