genome.fa.s24.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  131  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40655066--40655098	17	1.9	17	100	0	66	24	0	3	72	0.98
40655066--40655108	19	2.2	20	84	12	54	20	0	4	74	1.00
40667709--40667733	13	1.9	13	100	0	50	32	16	16	36	1.90
40669344--40669753	96	4.3	95	90	3	628	32	8	29	28	1.87
40669344--40669753	47	8.6	47	90	2	606	32	8	29	28	1.87
40669344--40669753	143	2.9	143	92	2	655	32	8	29	28	1.87
40677824--40677873	24	2.0	25	85	11	68	72	8	0	20	1.10
40704128--40704152	12	2.1	12	100	0	50	8	24	40	28	1.83
40708867--40708897	3	10.3	3	100	0	62	64	0	0	35	0.94
40710564--40710606	20	2.2	20	87	8	61	2	23	0	74	0.93
40710564--40710597	10	3.3	10	87	4	50	2	23	0	73	0.97
40710556--40710607	27	1.9	27	88	7	79	3	23	0	73	1.00
40712984--40713016	18	1.9	17	88	11	50	27	30	0	42	1.56
40713146--40713174	9	3.2	9	100	0	58	31	0	0	68	0.89
40717157--40717194	16	2.4	16	87	12	53	15	0	36	47	1.46
40717261--40717381	34	3.7	33	76	13	124	39	1	13	45	1.53
40717254--40717382	33	3.8	33	77	7	134	41	2	12	44	1.55
40717469--40717734	124	2.1	125	85	6	369	36	15	16	31	1.91
40721241--40721279	18	2.2	18	95	0	69	41	10	25	23	1.86
40722808--40722859	25	2.1	24	82	10	61	69	1	1	26	1.10
40723621--40723651	9	3.4	9	90	0	53	25	12	22	38	1.90
40724220--40724286	9	7.4	9	86	0	80	44	23	8	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40724220--40724286	27	2.5	27	82	0	89	44	23	8	22	1.81
40724386--40724432	18	2.6	18	93	0	76	19	2	38	40	1.63
40732797--40732835	16	2.5	16	80	19	55	38	0	0	61	0.96
40739611--40739760	70	2.1	70	86	2	203	18	12	30	39	1.86
40739610--40739760	35	4.3	35	82	1	178	17	11	30	39	1.86
40744178--40744228	25	2.0	25	100	0	102	27	19	3	49	1.66
40747489--40747527	18	2.2	18	86	4	53	20	46	20	12	1.83
40748415--40748622	103	2.0	103	97	0	389	40	22	15	21	1.90
40762597--40762678	25	3.5	22	76	11	74	45	4	1	48	1.31
40762636--40762691	22	2.6	21	78	18	69	41	8	0	50	1.34
40764691--40764752	14	4.2	16	72	16	62	50	1	0	48	1.10
40764737--40764798	24	2.7	23	76	14	65	53	1	0	45	1.10
40765416--40765466	22	2.4	22	80	3	59	62	1	0	35	1.06
40776622--40776690	28	2.5	28	86	6	88	33	26	13	27	1.93
40785849--40785918	25	2.8	25	80	0	86	27	28	20	24	1.99
40789121--40789163	20	2.2	19	84	12	52	58	4	18	18	1.56
40793532--40793556	8	3.1	8	100	0	50	12	0	0	88	0.53
40796203--40796229	5	5.4	5	100	0	54	37	0	0	62	0.95
40803376--40803406	13	2.4	13	88	0	53	19	3	6	70	1.22
40804754--40804791	20	1.9	20	89	10	60	39	10	28	21	1.86
40811007--40811281	151	1.8	151	85	0	388	26	17	28	27	1.98
40823059--40823195	43	3.2	43	80	8	145	33	20	18	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40823137--40823358	43	5.2	43	80	4	209	30	14	22	32	1.94
40826807--40826978	41	4.2	41	96	0	299	19	20	29	30	1.97
40826986--40827029	20	2.3	19	84	7	61	22	6	4	65	1.35
40827408--40827448	21	2.0	21	85	0	55	24	0	41	34	1.55
40827525--40827577	7	7.6	7	91	0	79	13	0	52	33	1.40
40827525--40827585	14	4.4	14	89	0	77	16	0	50	32	1.45
40827544--40827584	21	2.0	21	90	0	64	21	0	48	29	1.50
40831416--40831663	43	5.8	43	75	9	177	22	16	30	31	1.95
40831442--40831682	86	2.8	86	83	1	270	22	17	30	29	1.97
40832090--40832131	22	1.9	22	85	0	57	52	11	9	26	1.68
40832298--40832442	42	3.5	41	86	1	200	24	18	20	36	1.95
40832871--40832921	21	2.4	21	86	0	66	3	45	17	33	1.67
40843835--40843859	13	1.9	13	100	0	50	68	0	0	32	0.90
40860840--40860878	3	13.0	3	94	0	69	64	0	2	33	1.08
40865675--40865700	13	2.0	13	100	0	52	38	0	7	53	1.30
40866951--40866997	24	2.0	24	82	0	58	23	6	0	70	1.10
40868433--40868458	3	8.7	3	100	0	52	69	0	0	30	0.89
40870019--40870072	26	2.1	26	86	6	74	29	14	11	44	1.80
40878235--40878264	5	6.0	5	100	0	60	80	0	0	20	0.72
40883595--40883741	40	3.7	40	83	5	120	25	27	21	25	2.00
40883641--40883821	80	2.3	80	83	9	219	27	27	20	23	1.99
40883638--40883821	40	4.6	40	81	7	196	28	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40891501--40891624	40	3.1	39	86	5	167	29	26	19	24	1.98
40894848--40894945	27	3.5	28	90	2	135	26	13	28	31	1.94
40894876--40894958	27	3.0	27	87	5	96	30	12	25	32	1.92
40894848--40894959	28	4.0	27	83	6	98	28	12	25	33	1.92
40895843--40895875	16	2.0	17	88	5	50	51	0	6	42	1.26
40896668--40896728	29	2.1	30	85	11	83	40	4	3	50	1.40
40896668--40896740	29	2.6	28	83	12	80	39	5	4	50	1.44
40897359--40897392	11	3.1	11	91	0	50	47	0	0	52	1.00
40897468--40897513	10	4.3	10	91	8	65	36	0	0	63	0.95
40897468--40897513	11	4.2	11	88	8	67	36	0	0	63	0.95
40897468--40897513	21	2.1	21	92	4	74	36	0	0	63	0.95
40904739--40904787	21	2.3	21	82	6	64	2	10	8	79	1.01
40908188--40908244	18	3.2	18	78	9	71	49	22	1	26	1.60
40908634--40908667	5	7.0	5	86	6	52	44	0	0	55	0.99
40908685--40908752	28	2.5	27	83	6	84	51	11	2	33	1.54
40908990--40909018	2	14.5	2	100	0	58	51	0	0	48	1.00
40910285--40910309	3	8.3	3	100	0	50	32	0	0	68	0.90
40910724--40910767	21	2.0	22	91	4	72	31	2	36	29	1.70
40911826--40911886	29	2.2	27	83	13	72	39	1	1	57	1.18
40917392--40917663	125	2.2	127	88	2	406	26	20	18	35	1.95
40917865--40917900	13	2.6	14	86	4	56	44	41	0	13	1.44
40922199--40922231	17	1.9	17	93	0	57	33	9	12	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40924367--40924472	43	2.5	43	81	4	117	26	17	24	31	1.97
40924368--40924467	42	2.4	42	80	6	112	26	18	23	33	1.97
40929098--40929130	16	2.1	16	94	0	57	36	15	12	36	1.84
40938028--40938070	23	2.0	21	81	9	50	34	11	13	39	1.82
40939709--40939963	137	1.9	137	80	8	304	21	17	27	33	1.96
40952645--40952715	27	2.7	27	83	12	85	19	23	22	33	1.97
40952750--40952923	32	5.5	32	80	3	208	20	20	20	37	1.94
40952750--40952922	64	2.7	64	91	0	276	20	20	20	37	1.94
40953154--40953236	28	3.0	28	89	0	112	20	21	25	32	1.98
40977183--40977242	30	2.0	30	87	3	86	48	6	16	28	1.71
40977577--40977629	26	2.0	26	92	0	88	18	13	32	35	1.90
40977642--40977924	43	6.7	44	73	12	209	24	18	24	32	1.97
40977641--40977924	85	3.4	84	87	2	408	24	17	24	33	1.97
40977603--40977926	170	1.9	169	85	1	452	24	17	24	33	1.96
40984343--40984399	21	2.8	20	76	20	55	38	1	15	43	1.57
40986192--40986257	21	3.2	20	68	12	53	30	19	31	18	1.96
40988464--40988631	81	2.1	81	98	1	327	24	25	8	41	1.82
40999651--40999699	23	2.1	23	85	7	64	34	26	4	34	1.76
41004992--41005063	39	1.9	36	83	13	92	50	33	0	16	1.46
41004992--41005047	18	3.1	18	77	12	62	50	33	0	16	1.45
41005068--41005111	22	2.0	22	100	0	88	54	13	22	9	1.67
41005801--41005829	2	14.5	2	100	0	58	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41009548--41009608	20	3.1	19	80	7	59	54	0	1	44	1.10
41009937--41010007	22	3.2	22	63	21	58	38	7	12	42	1.70
41009932--41010025	44	2.1	44	98	0	179	43	6	12	37	1.69
41015787--41015905	42	2.8	42	90	0	184	21	20	21	36	1.95
41016226--41016325	21	4.8	21	81	0	119	8	40	20	32	1.81
41016226--41016333	42	2.6	42	87	0	144	7	38	20	33	1.80
41021578--41021602	6	4.2	6	100	0	50	84	0	0	16	0.63
41024307--41024336	14	2.1	14	93	0	51	40	36	0	23	1.55
41025153--41025194	15	2.9	15	96	3	77	50	28	0	21	1.49
41025153--41025222	30	2.4	29	79	13	72	47	30	0	22	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226