genome.fa.s24.2.7.7.80.10.50.1000.218.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  218  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65176529--65176577	3	16.3	3	100	0	98	67	0	0	32	0.91
65179392--65179501	49	2.2	49	88	3	159	50	16	21	10	1.75
65179499--65179528	16	1.9	15	93	6	51	83	3	13	0	0.77
65179487--65179530	19	2.4	19	80	3	54	84	2	13	0	0.73
65179603--65179682	41	1.9	42	89	2	126	30	16	30	23	1.96
65180840--65181020	89	2.0	89	84	4	231	28	23	24	23	1.99
65181470--65181926	44	10.7	43	66	14	176	32	19	20	27	1.97
65181386--65181990	84	7.1	84	66	16	226	32	19	20	27	1.97
65181207--65182274	128	8.3	128	90	0	1616	33	19	19	26	1.97
65182907--65182971	27	2.4	26	80	7	76	13	12	0	73	1.09
65183762--65183808	3	15.7	3	100	0	94	34	0	0	65	0.93
65184247--65184275	6	4.8	6	100	0	58	34	13	0	51	1.42
65184327--65184364	19	2.0	20	89	5	60	42	7	0	50	1.31
65189372--65189432	30	2.0	30	90	0	95	19	34	32	13	1.90
65190089--65190113	12	2.1	12	100	0	50	40	0	0	60	0.97
65203956--65203985	9	3.3	9	90	0	51	26	20	23	30	1.98
65206788--65206812	13	1.9	13	100	0	50	40	44	0	16	1.47
65206911--65206977	9	7.4	9	86	6	91	26	8	20	43	1.82
65209588--65209621	16	2.1	16	88	0	50	20	2	2	73	1.09
65213068--65213151	42	2.0	42	97	0	159	29	23	8	38	1.84
65213829--65213871	18	2.4	18	88	7	61	53	0	0	46	1.00
65214629--65214695	33	2.0	32	83	13	82	64	1	0	34	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65214661--65214767	11	10.4	11	71	23	81	57	0	2	39	1.13
65214660--65214777	39	2.9	40	92	5	193	59	0	2	38	1.11
65216997--65217030	13	2.5	13	90	4	50	17	5	2	73	1.16
65220201--65220625	112	3.9	110	87	3	543	35	19	14	31	1.91
65221194--65221224	3	10.3	3	100	0	62	67	0	0	32	0.91
65222151--65222251	44	2.3	44	85	0	130	21	30	19	27	1.98
65222175--65222351	44	4.0	43	79	4	203	23	25	21	29	1.99
65222192--65222384	44	4.4	43	76	4	181	22	24	22	30	1.99
65222017--65222338	175	1.8	175	83	4	425	23	26	20	29	1.99
65221977--65222384	87	4.7	87	76	5	335	23	25	21	29	1.99
65222457--65223390	86	10.9	86	94	0	1600	23	23	23	29	1.99
65222472--65223380	43	21.2	43	62	17	235	23	24	23	29	1.99
65224608--65224647	7	6.0	7	82	11	57	15	17	0	67	1.23
65224608--65224647	13	3.0	14	89	7	57	15	17	0	67	1.23
65224608--65224647	20	2.0	20	95	0	71	15	17	0	67	1.23
65228819--65229243	112	3.9	110	87	3	543	35	19	14	30	1.92
65232197--65232248	24	2.2	24	85	0	68	53	9	3	32	1.51
65233932--65233989	24	2.5	24	85	2	73	60	1	1	36	1.17
65234364--65234446	42	2.0	42	85	4	114	40	9	16	32	1.81
65242383--65242440	24	2.4	23	80	8	71	32	1	12	53	1.48
65258241--65258309	18	3.8	18	82	3	77	33	10	23	33	1.88
65262186--65262236	3	17.7	3	86	8	70	62	0	37	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65262186--65262236	20	2.5	20	93	0	84	62	0	37	0	0.95
65262178--65262235	17	3.6	17	77	17	70	62	0	37	0	0.96
65262398--65262458	19	3.2	19	79	9	70	34	0	13	52	1.40
65262405--65262567	19	8.0	20	70	21	106	32	0	12	54	1.38
65262403--65262567	41	4.1	40	73	18	162	33	0	12	53	1.39
65262516--65262728	49	4.3	49	85	7	304	31	0	13	53	1.45
65262665--65262722	22	2.9	19	71	14	53	34	1	12	51	1.49
65262516--65262728	97	2.2	99	92	3	358	31	0	13	53	1.45
65265912--65265976	6	10.8	6	91	0	103	0	36	30	32	1.58
65267599--65267640	16	2.7	15	85	7	57	57	2	2	38	1.25
65267751--65267824	38	1.9	38	94	0	130	40	2	4	52	1.34
65268020--65268246	22	9.1	27	75	20	203	53	13	0	32	1.46
65267972--65268246	49	5.6	49	83	8	332	52	14	1	32	1.49
65268020--65268216	27	7.8	27	73	19	111	54	13	1	30	1.46
65268025--65268242	97	2.2	101	90	4	347	54	13	0	31	1.45
65268197--65268358	20	7.9	22	71	16	93	54	12	0	32	1.39
65268196--65268254	18	3.1	18	83	11	73	52	13	0	33	1.41
65268299--65268360	19	3.2	19	84	4	88	53	12	0	33	1.39
65268890--65268928	21	1.9	20	84	5	51	53	5	2	38	1.37
65274284--65274322	13	2.9	13	80	3	51	10	7	2	79	1.02
65282570--65282612	3	14.0	3	95	4	77	65	0	0	34	0.93
65287949--65288041	20	4.8	19	76	7	80	22	1	8	67	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65292691--65292734	23	1.9	23	95	0	79	22	15	15	45	1.85
65300254--65300336	42	2.0	42	83	4	105	40	7	19	32	1.79
65301332--65301385	23	2.3	24	78	9	58	35	1	11	51	1.48
65308164--65308211	25	1.9	25	87	8	71	33	0	12	54	1.38
65308494--65308828	167	2.0	167	100	0	670	34	12	15	37	1.86
65312122--65312181	29	2.1	28	87	3	84	23	11	20	45	1.83
65315839--65315872	13	2.5	13	90	4	50	14	5	5	73	1.21
65318932--65319027	39	2.4	41	79	6	108	41	20	18	18	1.90
65319060--65319257	41	4.9	41	91	1	281	25	21	24	28	1.99
65319084--65319257	81	2.1	81	92	1	285	24	22	25	27	2.00
65319351--65319401	26	2.0	26	88	0	75	60	5	9	23	1.50
65319747--65319876	62	2.1	63	84	4	165	27	1	25	45	1.62
65320018--65320065	21	2.3	21	76	16	55	37	0	33	29	1.58
65325206--65325278	35	2.1	36	84	7	96	35	1	5	57	1.30
65325411--65325729	43	7.5	42	77	7	119	24	17	25	32	1.97
65325485--65325732	43	5.8	43	79	2	248	26	19	25	29	1.98
65325464--65325736	86	3.2	86	84	1	323	24	19	24	30	1.98
65329126--65329155	15	2.0	15	93	0	51	36	13	13	36	1.84
65336014--65336069	9	6.2	9	80	0	67	23	25	16	35	1.94
65344767--65344822	27	2.1	27	93	0	94	41	16	7	35	1.75
65344767--65344807	13	3.0	14	73	20	50	43	14	4	36	1.67
65344769--65344816	15	3.4	15	72	16	57	41	18	2	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65347571--65347600	9	3.3	9	90	0	51	26	20	23	30	1.98
65355971--65356000	15	1.9	16	93	6	53	30	0	30	40	1.57
65361113--65361246	61	2.2	60	89	1	196	30	29	24	14	1.95
65361227--65361441	43	5.5	42	72	20	214	34	27	16	21	1.95
65361261--65361474	33	5.8	33	70	22	133	35	27	18	18	1.94
65361225--65361476	76	3.3	76	92	3	409	34	28	17	19	1.95
65365389--65365415	13	2.1	13	100	0	54	33	14	7	44	1.73
65365966--65366014	25	2.0	25	84	8	64	34	16	30	18	1.93
65370378--65370420	18	2.4	18	92	7	70	55	0	0	44	0.99
65370503--65370531	13	2.2	13	100	0	58	31	17	20	31	1.96
65373656--65373702	4	11.8	4	100	0	94	25	0	23	51	1.49
65375771--65375818	25	1.9	25	91	8	80	33	0	14	52	1.42
65379610--65379652	18	2.4	18	88	7	61	53	0	0	46	1.00
65384865--65385258	153	2.6	153	85	4	528	25	19	17	37	1.93
65389876--65389914	16	2.4	16	91	0	60	53	10	0	35	1.35
65389918--65389959	16	2.6	16	92	0	66	42	7	2	47	1.43
65397576--65397601	5	5.2	5	100	0	52	19	0	0	80	0.71
65420222--65420421	100	2.0	100	98	0	382	42	18	11	27	1.85
65421989--65422027	16	2.6	15	88	8	53	35	0	2	61	1.10
65435118--65435149	7	4.7	7	96	3	57	37	0	0	62	0.95
65435110--65435149	13	3.0	13	89	7	62	37	0	0	62	0.95
65435110--65435149	20	2.0	20	85	9	55	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65437048--65437099	26	2.0	26	100	0	104	57	3	11	26	1.51
65437050--65437106	26	2.2	26	93	0	96	57	7	8	26	1.54
65437367--65437417	18	2.9	18	80	11	52	37	1	0	60	1.08
65442656--65443020	153	2.4	154	89	2	558	26	19	16	38	1.92
65442656--65443073	153	2.7	152	85	3	482	25	20	15	38	1.92
65448699--65448724	5	5.2	5	100	0	52	19	0	0	80	0.71
65452993--65453034	20	2.1	20	100	0	84	33	23	4	38	1.76
65456559--65456626	21	3.2	20	69	19	57	42	20	13	23	1.87
65456538--65456636	43	2.3	43	85	3	146	41	16	15	27	1.88
65456557--65456624	22	3.1	21	68	19	59	44	20	11	23	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226