Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  170  of  226  ( 27070 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52286079--52286390
90
3.5
89
74
8
247
17
24
31
26
1.97
52288816--52288988
90
2.0
86
90
8
273
41
8
8
42
1.65
52295774--52295872
48
2.1
48
94
0
171
52
3
15
29
1.57
52295784--52295860
25
3.2
25
68
20
72
51
1
15
31
1.51
52295798--52295871
25
3.0
24
69
21
64
51
2
16
29
1.58
52302180--52302258
31
2.6
30
78
13
81
43
11
11
34
1.77
52306587--52306762
74
2.4
75
81
4
189
34
14
13
38
1.85
52309945--52309990
16
2.6
17
80
19
51
45
0
32
21
1.52
52310341--52310377
9
4.1
9
92
0
65
29
10
13
45
1.77
52311913--52311974
30
2.2
29
85
8
83
61
4
6
27
1.41
52311954--52311983
5
5.8
5
92
7
51
80
0
3
16
0.85
52312962--52313018
22
2.6
22
81
13
64
19
29
0
50
1.47
52319382--52319441
24
2.5
24
80
2
75
40
10
3
46
1.54
52322245--52322298
21
2.7
21
85
5
67
37
18
11
33
1.86
52322672--52323102
44
9.8
44
85
2
535
30
24
14
30
1.95
52322672--52323102
177
2.4
177
91
1
697
30
24
14
30
1.95
52322672--52323176
133
3.8
132
83
4
538
29
24
16
29
1.96
52323039--52323826
88
9.0
88
88
1
1030
26
26
22
25
2.00
52323039--52323826
351
2.2
352
85
2
1057
26
26
22
25
2.00
52325423--52325447
9
2.8
9
100
0
50
0
8
0
92
0.40
52330675--52330726
19
2.6
21
81
12
72
38
13
11
36
1.81
52331747--52331858
57
1.9
57
85
3
152
40
17
23
18
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52331789--52332191
212
1.9
211
91
2
657
36
15
19
28
1.93
52331789--52332191
107
3.8
105
89
3
587
36
15
19
28
1.93
52336002--52336040
3
13.3
3
89
5
62
69
2
0
28
1.02
52346543--52346571
11
2.6
11
100
0
58
58
6
13
20
1.58
52347183--52347213
15
2.0
16
93
6
55
64
12
22
0
1.27
52347517--52347541
12
2.1
12
100
0
50
68
0
32
0
0.90
52348765--52348866
51
2.0
52
90
1
161
62
11
8
16
1.53
52349029--52349061
17
1.9
18
88
11
52
45
0
12
42
1.41
52350274--52350324
9
5.4
9
86
9
75
39
27
9
23
1.86
52350274--52350322
20
2.5
20
90
6
75
40
28
10
20
1.85
52354468--52354519
25
2.1
25
92
7
88
25
26
9
38
1.86
52356994--52357021
14
2.0
14
100
0
56
57
0
0
42
0.99
52356980--52357012
10
3.3
10
95
0
57
51
0
0
48
1.00
52357043--52357127
32
2.6
33
77
5
93
44
18
10
25
1.82
52357108--52357173
35
1.9
34
84
6
89
48
12
7
31
1.68
52360290--52360448
39
4.1
39
82
0
183
35
31
16
16
1.92
52360305--52360448
78
1.8
78
88
2
218
34
29
17
18
1.93
52371676--52371704
14
2.0
15
93
6
51
34
0
13
51
1.42
52375956--52376035
29
2.8
29
80
0
106
42
6
18
32
1.75
52375947--52376034
29
3.0
28
78
8
95
38
6
20
34
1.79
52378471--52378510
16
2.5
16
95
0
71
22
12
20
45
1.84
52379480--52379716
59
4.0
59
92
3
388
51
8
4
35
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52380093--52380136
18
2.4
18
92
0
70
43
11
22
22
1.85
52384069--52384131
3
21.0
3
85
0
54
31
7
3
57
1.43
52388266--52388292
6
4.5
6
100
0
54
48
0
0
51
1.00
52402366--52402392
14
1.9
14
100
0
54
88
0
0
11
0.50
52402509--52402552
4
12.0
4
81
13
51
72
0
27
0
0.85
52402509--52402588
22
3.5
22
77
9
72
70
0
27
2
1.01
52402508--52402552
18
2.5
19
85
7
67
71
0
28
0
0.87
52402524--52402580
14
4.0
14
75
16
55
73
0
24
1
0.92
52402508--52402559
18
2.9
17
77
11
59
69
0
28
1
0.99
52402988--52403654
284
2.3
285
94
1
1158
50
7
11
30
1.66
52408806--52408831
9
2.9
9
100
0
52
57
0
0
42
0.98
52408843--52408889
19
2.7
18
84
12
62
61
12
0
25
1.31
52409143--52409180
10
3.7
10
89
3
58
0
28
0
71
0.87
52409251--52409315
27
2.4
27
94
0
112
16
33
33
15
1.91
52409780--52409818
20
2.0
20
84
0
51
64
0
5
30
1.15
52409816--52409842
7
3.9
7
100
0
54
44
0
0
55
0.99
52410814--52410853
21
2.0
20
85
5
53
55
0
0
45
0.99
52410788--52410857
28
2.5
27
84
11
79
51
0
2
45
1.16
52414612--52414663
19
2.8
18
72
16
52
32
3
0
63
1.12
52414762--52414791
15
2.1
15
93
6
53
10
0
6
83
0.81
52415026--52415062
9
4.1
9
89
0
56
45
10
10
32
1.74
52422290--52422489
102
2.0
102
90
0
319
32
27
19
21
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52422394--52422530
42
3.5
40
71
17
117
33
27
17
21
1.96
52422392--52422564
75
2.3
75
89
0
265
34
26
19
20
1.96
52422258--52422595
177
1.9
177
90
1
543
32
26
18
21
1.97
52422436--52422563
33
3.6
33
71
17
112
35
25
20
18
1.95
52430894--52431210
127
2.5
127
85
4
415
39
15
9
36
1.79
52430894--52431250
127
2.8
127
83
6
370
38
15
9
36
1.80
52438708--52438856
63
2.4
63
82
4
169
24
28
22
24
1.99
52439401--52439451
23
2.3
23
83
6
70
70
3
21
3
1.20
52443349--52443428
28
2.9
28
90
0
115
62
6
11
20
1.49
52446964--52447003
16
2.4
16
91
8
62
47
20
0
32
1.50
52448954--52449008
3
18.3
3
88
0
74
58
0
7
34
1.26
52458228--52458419
98
2.0
98
94
0
339
36
24
10
27
1.89
52458702--52458734
15
2.2
15
94
0
57
63
12
0
24
1.28
52459186--52459213
3
9.3
3
100
0
56
67
0
0
32
0.91
52459823--52459857
6
5.7
6
93
6
61
85
0
0
14
0.59
52460884--52460934
19
2.7
19
81
6
59
56
1
0
41
1.10
52460921--52460997
30
2.5
30
85
6
93
46
3
3
45
1.39
52460941--52461007
29
2.3
30
81
2
82
47
4
2
44
1.38
52461574--52461627
24
2.2
25
83
9
67
40
5
1
51
1.36
52464186--52464278
46
2.0
46
87
0
132
31
19
21
27
1.97
52469755--52469788
15
2.1
17
89
10
54
35
5
0
58
1.22
52477647--52477692
20
2.3
20
88
0
65
54
0
19
26
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52477657--52477695
20
2.0
20
100
0
78
48
0
20
30
1.50
52481668--52481756
28
3.1
28
79
4
106
56
3
14
25
1.54
52485423--52485720
50
5.9
50
79
5
262
27
21
28
22
1.99
52491543--52491573
16
1.9
16
93
0
53
38
0
0
61
0.96
52491642--52491706
6
10.5
6
76
17
62
47
1
0
50
1.10
52491636--52491716
31
2.7
30
79
11
94
48
2
0
49
1.14
52510198--52510240
18
2.4
18
80
7
52
74
4
0
20
1.00
52528950--52529001
26
2.0
26
100
0
104
26
30
7
34
1.85
52529278--52529345
34
2.0
35
85
5
95
30
22
26
20
1.98
52530939--52530967
5
5.8
5
100
0
58
58
20
0
20
1.39
52531648--52531677
12
2.5
12
94
0
51
6
23
40
30
1.80
52537384--52537438
18
3.1
18
100
0
110
40
5
21
32
1.76
52552680--52552769
18
5.0
18
84
0
126
32
15
23
28
1.95
52552681--52552769
36
2.5
36
88
0
142
32
15
22
29
1.95
52555482--52555578
22
4.4
22
70
14
65
48
1
4
46
1.28
52555506--52555558
26
2.0
27
88
3
81
43
0
3
52
1.19
52555538--52555580
19
2.3
19
84
8
52
41
2
2
53
1.26
52557624--52557695
13
5.3
13
71
17
58
77
0
4
18
0.92
52557620--52557674
20
2.7
20
82
17
69
78
0
5
16
0.93
52557625--52557700
29
2.6
29
80
12
84
78
0
3
17
0.89
52557627--52557699
4
18.8
4
71
20
57
78
0
4
17
0.91
52559562--52559610
25
2.0
25
83
0
62
38
0
16
44
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52562349--52562427
39
2.0
39
87
0
113
26
15
20
37
1.92
52572132--52572156
12
2.1
12
100
0
50
16
16
8
60
1.58
52577940--52577984
17
2.7
16
86
6
54
20
22
28
28
1.98
52583925--52583972
12
3.9
12
81
13
62
2
16
2
79
0.93
52584400--52584446
24
2.0
23
87
8
67
6
2
6
85
0.82
52584400--52584457
26
2.3
24
82
11
71
6
1
6
84
0.84
52584400--52584457
25
2.3
24
83
16
73
6
1
6
84
0.84
52588876--52588904
14
2.0
15
93
6
51
55
6
6
31
1.53
52589510--52589589
3
25.7
3
75
9
54
63
1
7
27
1.29
52589549--52589589
15
2.7
15
88
0
64
68
0
4
26
1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226