genome.fa.s24.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  127  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39429036--39429491	47	9.6	47	91	2	714	33	8	29	29	1.86
39429036--39429491	96	4.8	94	92	1	723	33	8	29	29	1.86
39429036--39429491	143	3.2	143	94	1	763	33	8	29	29	1.86
39429610--39429711	37	2.8	37	89	0	150	26	17	28	27	1.98
39430536--39430715	50	3.6	49	80	3	166	27	20	26	25	1.99
39435689--39435772	40	2.1	40	100	0	168	41	9	29	19	1.83
39436819--39436918	28	3.2	32	71	20	84	29	24	24	23	1.99
39437242--39437398	53	2.9	52	78	10	156	17	22	20	40	1.92
39437255--39437451	27	7.4	26	80	6	162	14	21	20	43	1.88
39437255--39437451	54	3.7	53	78	4	200	14	21	20	43	1.88
39445791--39445856	33	2.0	33	84	0	87	30	24	24	21	1.99
39445817--39445878	28	2.2	28	91	2	99	33	24	22	19	1.97
39446452--39446490	20	2.0	20	90	10	62	56	5	23	15	1.59
39448864--39448890	13	2.1	13	100	0	54	25	14	7	51	1.68
39450793--39451005	27	7.9	27	89	1	286	35	21	21	22	1.96
39450990--39451064	24	3.0	25	83	12	75	25	14	21	38	1.91
39450992--39451064	25	2.9	26	86	8	89	26	15	20	38	1.92
39451191--39451247	26	2.2	26	83	3	69	24	24	17	33	1.96
39451257--39451383	32	4.0	32	84	0	164	22	22	19	36	1.95
39451258--39451383	64	2.0	64	88	0	189	22	22	19	36	1.95
39451590--39451694	46	2.2	45	75	11	104	23	18	14	43	1.86
39454895--39455130	50	4.7	50	87	0	337	26	22	31	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39455757--39455998	50	4.8	50	84	3	317	26	21	30	21	1.98
39463286--39463528	50	4.9	50	83	1	308	26	22	30	20	1.99
39466560--39466584	13	1.9	13	100	0	50	40	24	4	32	1.73
39471374--39471443	30	2.3	30	82	0	86	24	28	17	30	1.97
39471396--39471461	30	2.2	30	86	0	87	19	31	22	25	1.98
39479281--39479349	30	2.3	29	85	4	93	23	26	10	40	1.86
39485574--39485629	28	2.0	28	100	0	112	21	17	7	53	1.67
39486434--39486570	25	5.5	25	78	0	141	25	22	18	32	1.97
39486443--39486570	50	2.6	50	84	1	168	25	22	19	32	1.98
39497044--39497131	40	2.2	40	88	8	126	10	14	27	47	1.76
39508344--39508391	21	2.3	21	92	0	78	27	22	33	16	1.96
39513818--39513942	56	2.2	56	90	2	189	41	7	13	37	1.72
39513936--39514044	23	4.7	23	91	0	164	34	0	20	44	1.51
39514043--39515016	29	34.2	29	88	6	1469	29	0	26	44	1.57
39514067--39515016	86	11.1	86	89	6	1437	29	0	26	44	1.57
39514447--39514501	23	2.4	21	100	0	74	27	0	25	47	1.52
39515020--39515077	26	2.2	25	80	14	64	44	10	3	41	1.55
39517337--39517399	30	2.1	30	91	5	101	65	0	1	33	1.03
39523711--39523771	29	2.1	30	90	3	97	54	6	14	24	1.64
39530221--39530287	34	2.0	34	100	0	134	11	41	8	37	1.73
39531384--39531421	20	1.9	20	94	0	67	26	18	5	50	1.68
39542109--39542177	34	2.0	34	94	0	120	27	24	10	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39543794--39543846	23	2.3	23	90	0	88	22	20	24	32	1.98
39545690--39545718	8	3.6	8	100	0	58	0	0	10	89	0.48
39559733--39559780	13	3.7	13	88	0	69	31	25	6	37	1.81
39561328--39561454	45	2.8	43	78	10	121	20	11	27	40	1.87
39567905--39567935	14	2.1	15	94	5	55	64	0	6	29	1.18
39568707--39568913	40	5.2	40	80	0	225	22	27	15	34	1.94
39571630--39571680	18	2.8	17	75	21	50	45	0	31	23	1.53
39574189--39574240	6	8.7	6	89	0	68	32	3	19	44	1.69
39575624--39575684	3	20.0	3	86	3	77	72	0	26	1	0.94
39575622--39575672	25	2.0	25	100	0	102	68	0	27	3	1.07
39578182--39578243	24	2.6	23	89	7	88	61	4	1	32	1.27
39579763--39579873	44	2.5	44	85	2	143	30	21	20	27	1.98
39579802--39580614	44	18.7	46	67	17	130	27	24	19	27	1.99
39579837--39580042	84	2.4	85	81	11	233	29	25	18	26	1.98
39579719--39580704	217	4.5	217	93	1	1607	28	24	19	27	1.99
39592677--39592726	24	2.1	24	92	3	84	60	6	2	32	1.32
39604434--39604487	27	2.0	28	88	3	83	16	12	20	50	1.78
39611919--39611947	14	2.0	15	93	6	51	20	0	27	51	1.47
39616271--39616412	76	1.9	76	88	2	214	42	18	13	26	1.87
39618521--39618575	24	2.3	24	83	0	65	29	20	16	34	1.94
39618613--39618642	16	1.9	16	93	6	53	40	0	10	50	1.36
39633683--39633768	45	1.9	45	97	0	163	22	26	10	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39636664--39636688	10	2.5	10	100	0	50	0	20	0	80	0.72
39637789--39637986	101	2.0	100	97	1	378	38	3	7	51	1.45
39637813--39638026	100	2.1	100	85	5	272	40	2	7	49	1.45
39640214--39640413	40	5.1	40	82	3	208	25	26	21	27	1.99
39645528--39645613	45	1.9	45	97	0	163	22	26	10	40	1.86
39648512--39648536	10	2.5	10	100	0	50	0	20	0	80	0.72
39649642--39649843	101	2.0	100	98	0	386	39	2	6	50	1.44
39649666--39649867	100	2.0	101	89	2	309	40	2	7	49	1.46
39651330--39651678	26	13.8	26	70	12	174	32	6	4	57	1.43
39651334--39651522	51	3.7	52	76	12	144	32	6	3	57	1.40
39653034--39653123	27	3.4	27	79	11	105	30	7	2	60	1.37
39653034--39653265	26	9.1	25	74	13	145	30	6	3	59	1.42
39653332--39653393	24	2.4	26	78	10	56	30	6	0	62	1.20
39655742--39655795	25	2.2	25	86	0	72	16	24	16	42	1.88
39655881--39656022	76	1.9	76	82	2	178	42	17	14	25	1.87
39656853--39656882	12	2.6	11	94	5	51	3	16	0	80	0.85
39658096--39658145	24	2.1	24	84	0	64	30	20	16	34	1.94
39659124--39659173	23	2.1	24	88	3	75	28	8	8	56	1.57
39662010--39662053	23	1.9	23	85	0	61	27	15	18	38	1.91
39662150--39662232	22	3.8	22	72	3	69	32	7	18	42	1.77
39666199--39666302	31	3.4	31	69	9	88	27	16	12	43	1.84
39666173--39666307	60	2.3	60	87	3	184	28	16	12	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39668265--39668301	18	2.1	18	94	0	65	62	8	10	18	1.52
39673615--39673722	56	1.9	55	83	7	137	28	14	11	45	1.79
39673807--39673911	27	3.9	27	83	0	120	22	24	27	24	2.00
39677408--39677484	33	2.3	33	86	0	100	27	12	44	15	1.83
39677430--39677509	33	2.4	33	87	4	108	27	11	42	18	1.84
39681514--39681553	21	2.0	19	85	9	53	67	2	0	30	1.04
39681521--39681562	17	2.5	17	88	0	57	73	2	0	23	0.94
39681696--39681814	60	2.0	60	93	0	202	54	11	0	33	1.37
39681975--39682048	4	18.8	4	78	13	66	0	27	1	71	0.94
39681980--39682049	14	5.0	14	79	10	72	0	28	1	70	0.96
39682075--39682118	20	2.2	20	91	0	70	38	20	27	13	1.90
39683099--39683142	23	1.9	23	95	0	79	25	22	15	36	1.94
39698852--39698912	28	2.2	28	87	0	86	11	21	13	54	1.70
39712074--39712116	17	2.5	17	80	0	50	18	25	27	27	1.98
39712274--39712318	16	2.8	16	83	9	56	15	8	2	73	1.18
39716028--39716119	14	6.4	14	82	5	103	32	26	23	17	1.97
39716654--39716711	27	2.1	28	81	9	66	5	17	3	74	1.15
39716677--39716735	18	3.2	19	75	18	52	3	23	1	71	1.11
39716753--39716796	22	2.0	21	86	4	61	25	29	11	34	1.91
39717451--39717476	13	2.0	13	100	0	52	15	0	30	53	1.42
39730215--39730285	28	2.5	28	88	0	97	28	26	21	23	1.99
39730444--39730508	26	2.5	26	87	0	103	36	23	20	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39730654--39730849	27	7.3	27	72	15	131	19	18	19	42	1.90
39730654--39730840	53	3.5	53	76	11	177	18	19	20	41	1.90
39730673--39730800	26	4.8	26	75	11	116	17	21	19	42	1.90
39735205--39735246	19	2.2	19	87	8	59	35	4	2	57	1.33
39737762--39737977	76	2.8	76	77	2	218	30	25	18	25	1.98
39738745--39738782	19	2.0	19	85	10	51	21	42	0	36	1.53
39742044--39742082	16	2.5	16	87	4	53	35	7	2	53	1.43
39742624--39742664	20	2.1	19	86	4	55	14	12	0	73	1.11
39750192--39750224	15	2.3	15	89	5	50	54	18	0	27	1.44
39763659--39763722	13	4.9	13	83	7	85	37	25	6	31	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226