genome.fa.s24.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  116  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36147580--36147621	23	1.9	22	90	9	68	26	9	11	52	1.68
36161302--36161337	16	2.2	17	90	5	56	66	0	0	33	0.92
36165156--36165227	26	2.7	26	81	8	83	15	20	18	45	1.85
36165164--36165279	27	4.1	27	75	15	85	15	18	21	43	1.87
36166219--36166334	60	1.9	60	83	10	148	42	7	27	22	1.81
36172256--36172280	5	5.0	5	100	0	50	0	40	60	0	0.97
36172433--36172469	16	2.3	16	90	0	56	48	2	2	45	1.30
36175561--36175649	28	3.2	28	85	4	119	34	23	21	20	1.96
36175758--36175836	26	3.1	25	83	5	88	43	21	16	18	1.88
36175959--36176502	27	20.3	27	76	12	344	18	19	19	42	1.90
36175958--36176502	54	10.1	54	75	11	410	18	19	19	42	1.90
36175957--36176502	81	6.8	80	78	7	430	18	19	19	42	1.90
36177376--36177494	56	2.1	55	95	1	211	44	10	23	21	1.82
36178624--36178848	79	2.8	80	81	9	271	24	21	28	25	1.99
36178624--36178848	40	5.7	40	84	5	269	24	21	28	25	1.99
36181890--36181923	16	2.2	15	89	5	50	55	0	0	44	0.99
36188544--36188572	15	1.9	15	100	0	58	37	27	13	20	1.91
36192521--36192571	26	2.0	26	88	0	75	37	15	21	25	1.93
36199282--36200064	50	15.7	50	69	2	442	29	19	23	27	1.98
36199487--36199984	150	3.3	150	85	1	631	29	19	22	27	1.98
36199287--36200150	100	8.6	100	81	1	845	29	19	22	28	1.98
36200109--36200232	51	2.4	51	79	0	149	26	16	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36200109--36200564	169	2.7	169	85	2	583	28	17	26	28	1.97
36201374--36201418	23	2.0	23	81	0	54	22	2	13	62	1.42
36201704--36201779	36	2.1	36	80	11	84	38	9	1	51	1.42
36202042--36202071	3	10.0	3	100	0	60	33	0	0	66	0.92
36204676--36204860	51	3.6	51	78	5	205	25	19	25	28	1.99
36207543--36207639	47	2.0	47	84	2	122	28	15	24	30	1.96
36210378--36210557	51	3.5	51	78	3	152	25	18	26	29	1.98
36216632--36216682	26	1.9	27	84	4	68	25	23	19	31	1.98
36218473--36218678	29	7.1	29	76	4	128	23	22	13	40	1.90
36218544--36218700	58	2.7	57	73	5	129	24	24	12	39	1.89
36218515--36218700	87	2.1	87	80	3	205	23	23	12	39	1.89
36218956--36219296	168	2.0	169	96	0	630	35	18	7	38	1.79
36228734--36228787	24	2.3	23	77	22	58	29	1	5	62	1.28
36228688--36228767	41	2.0	42	87	5	119	36	3	3	56	1.35
36228772--36228984	24	9.3	23	68	17	106	34	7	3	53	1.48
36228773--36228894	45	2.7	46	79	11	117	35	9	1	54	1.42
36228819--36228972	69	2.2	69	78	11	165	35	7	3	53	1.48
36228938--36228996	24	2.4	23	77	22	59	35	1	3	59	1.24
36230731--36230765	16	2.2	16	89	0	52	20	20	20	40	1.92
36232609--36232637	15	1.9	15	100	0	58	75	10	0	13	1.04
36234895--36235034	45	3.1	45	68	17	119	27	23	23	25	2.00
36234916--36235060	44	3.3	44	70	16	129	24	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36234868--36235244	89	4.2	89	86	1	452	27	23	23	25	2.00
36235363--36235773	44	9.5	43	68	8	215	30	20	20	28	1.98
36235363--36235737	85	4.3	86	72	8	226	29	20	21	28	1.98
36235354--36235872	174	3.0	171	84	3	653	30	20	21	28	1.98
36235533--36235772	129	1.9	129	82	5	306	30	20	19	30	1.97
36237259--36237373	23	4.9	24	76	12	96	33	6	4	55	1.46
36237256--36237407	47	3.3	46	75	10	123	34	5	3	56	1.40
36237285--36237406	46	2.7	46	76	13	117	36	6	2	54	1.39
36237255--36237495	24	10.4	24	70	13	146	34	6	4	54	1.46
36237331--36237484	69	2.2	69	80	6	179	35	6	4	53	1.47
36237633--36237670	3	12.3	3	94	5	67	31	2	0	65	1.06
36239779--36239829	26	2.0	26	84	0	66	41	15	17	25	1.89
36243542--36243574	17	1.9	17	100	0	66	60	24	9	6	1.49
36243923--36243953	7	4.4	7	100	0	62	45	12	0	41	1.42
36248568--36248660	40	2.3	40	81	0	105	22	19	27	30	1.98
36252236--36252688	47	9.6	47	92	1	701	32	8	29	29	1.86
36264916--36264946	16	1.9	16	93	0	53	54	9	0	35	1.33
36268704--36268847	43	3.3	44	80	5	118	40	22	11	25	1.88
36276420--36276447	12	2.3	12	100	0	56	17	25	7	50	1.72
36276697--36276834	50	2.8	50	81	0	150	20	26	22	30	1.98
36278312--36278368	10	5.7	10	78	0	51	63	0	12	24	1.29
36280728--36280758	14	2.2	14	100	0	62	45	25	0	29	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36289056--36289123	27	2.5	27	82	0	91	22	23	25	29	1.99
36292558--36292615	17	3.6	17	75	11	59	36	3	1	58	1.25
36292627--36292742	62	1.9	59	84	5	151	39	4	3	52	1.38
36293386--36293412	14	1.9	14	100	0	54	29	0	25	44	1.54
36294493--36294548	22	2.5	22	73	0	58	50	19	7	23	1.72
36294557--36294605	23	2.0	25	81	14	59	28	53	6	12	1.62
36295092--36295156	24	2.7	24	80	0	67	24	38	20	16	1.93
36295523--36295594	35	2.1	36	81	5	85	56	6	26	9	1.56
36309590--36309638	23	2.1	23	96	0	89	18	4	18	59	1.53
36316544--36316587	15	2.9	15	82	3	52	34	0	6	59	1.24
36332845--36332912	29	2.3	29	80	5	75	39	2	0	57	1.14
36332860--36332925	29	2.3	29	81	0	69	37	1	3	57	1.23
36333327--36333378	26	2.0	26	100	0	104	23	19	19	38	1.93
36335305--36335415	29	3.8	29	78	7	116	40	9	13	36	1.76
36343360--36343406	9	5.3	9	97	2	87	29	0	0	70	0.88
36343360--36343415	18	3.2	18	82	12	71	28	1	0	69	0.98
36351375--36351476	43	2.4	43	86	0	141	38	25	13	22	1.91
36357886--36357976	42	2.2	42	82	5	105	26	24	18	30	1.98
36358535--36358568	7	4.9	7	96	0	59	47	26	0	26	1.53
36358535--36358575	21	2.0	21	85	0	55	51	24	0	24	1.49
36358515--36358711	64	3.1	63	77	7	173	44	32	0	22	1.57
36358622--36358716	7	13.4	7	76	2	82	47	28	1	23	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36358507--36358712	57	3.6	57	77	8	161	43	33	0	22	1.57
36358508--36358716	14	14.2	14	71	12	98	44	32	0	22	1.57
36359140--36359242	40	2.6	40	87	0	143	28	24	18	29	1.98
36359288--36359409	40	3.0	40	84	4	156	27	23	22	27	1.99
36359019--36359397	155	2.5	154	85	2	492	29	21	18	30	1.97
36362229--36362281	25	2.1	26	82	3	63	49	20	11	18	1.78
36362294--36362404	53	2.2	49	85	9	143	23	15	17	44	1.86
36362320--36362413	27	3.5	27	75	2	100	23	12	17	46	1.82
36373290--36373990	232	3.1	231	86	7	1039	36	16	22	23	1.94
36373526--36373931	225	1.8	223	97	1	751	36	16	22	24	1.94
36373766--36374340	285	2.0	285	98	0	1114	33	17	21	27	1.96
36381767--36381922	82	1.9	81	85	3	215	26	16	28	28	1.97
36381766--36381919	55	2.9	52	82	7	175	27	16	27	27	1.97
36381767--36381922	27	5.7	27	81	6	163	26	16	28	28	1.97
36381759--36381943	27	6.8	27	75	9	101	26	16	28	29	1.97
36381759--36381943	82	2.3	81	78	2	210	26	16	28	29	1.97
36385146--36385250	49	2.1	50	82	1	122	25	20	32	21	1.97
36387650--36387690	20	2.2	18	91	8	64	17	0	4	78	0.93
36396742--36396877	44	3.1	43	68	8	112	26	27	26	19	1.99
36396762--36396896	44	3.1	44	68	4	119	25	25	25	24	2.00
36396713--36396896	88	2.1	88	89	0	278	27	27	23	21	1.99
36396754--36396885	43	3.0	42	69	8	120	25	27	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36396871--36397008	44	3.2	44	70	2	125	30	21	24	23	1.99
36396898--36397061	44	3.8	43	70	5	141	26	24	25	23	2.00
36396866--36397058	87	2.2	88	89	0	298	28	22	25	23	1.99
36396845--36397080	87	2.7	85	82	5	285	26	25	23	25	2.00
36397028--36397916	44	20.5	44	70	12	369	28	20	22	28	1.98
36397028--36397916	217	4.1	217	90	0	1375	28	20	22	28	1.98
36398131--36398188	24	2.4	24	94	5	100	44	25	18	10	1.82
36399982--36400172	36	5.0	36	80	12	211	37	12	19	30	1.89
36399946--36400172	82	2.9	81	84	7	283	37	11	20	30	1.89
36410264--36410288	12	2.1	12	100	0	50	48	20	24	8	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226