genome.fa.s24.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  209  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62367024--62367078	24	2.2	24	87	9	76	0	20	0	80	0.72
62367024--62367078	25	2.2	26	87	9	78	0	20	0	80	0.72
62367352--62367426	25	3.1	23	80	12	55	0	28	0	72	0.86
62367368--62367422	4	14.8	4	81	14	73	0	23	0	76	0.79
62367368--62367422	15	3.7	15	92	4	85	0	23	0	76	0.79
62367348--62367431	7	11.6	7	77	15	82	0	28	0	71	0.86
62367368--62367429	15	4.1	14	86	12	79	0	24	0	75	0.80
62367753--62367809	30	1.9	30	85	0	78	38	5	19	36	1.74
62375619--62375648	15	1.9	16	93	6	53	53	6	0	40	1.27
62378224--62378292	31	2.2	31	89	0	102	50	10	18	20	1.75
62385448--62385477	12	2.5	12	94	0	51	46	0	6	46	1.29
62385563--62385604	16	2.6	17	81	11	52	59	7	0	33	1.25
62385559--62385613	18	3.2	17	73	19	51	60	7	0	32	1.24
62385819--62385901	3	28.3	3	73	20	54	66	1	3	28	1.16
62386377--62386438	22	2.8	23	92	4	94	12	6	56	24	1.60
62386769--62386914	42	3.5	42	79	4	170	21	17	23	37	1.94
62386961--62387318	44	7.8	45	75	13	121	27	22	18	31	1.97
62387016--62387132	46	2.5	46	100	0	234	27	17	22	33	1.96
62387152--62387312	88	1.8	88	82	5	209	29	23	16	30	1.96
62387152--62387448	44	6.8	44	73	11	150	28	23	17	30	1.97
62387465--62387998	132	4.0	132	94	0	897	29	25	17	27	1.97
62387465--62388680	44	27.6	44	67	11	436	29	25	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62387465--62387998	265	2.0	264	93	0	906	29	25	17	27	1.97
62388006--62388256	134	1.9	134	92	0	421	29	22	20	27	1.98
62388194--62388776	132	4.4	132	91	0	878	29	25	17	27	1.98
62401068--62401109	16	2.6	17	81	11	52	59	7	0	33	1.25
62401064--62401118	18	3.2	17	73	19	51	60	7	0	32	1.24
62401323--62401398	15	5.1	15	71	25	54	64	1	3	30	1.20
62401879--62401940	22	2.8	23	92	4	94	12	6	56	24	1.60
62402782--62402834	17	3.1	17	83	2	70	50	1	22	24	1.59
62410005--62410055	25	2.0	25	96	0	93	49	13	3	33	1.61
62424680--62424786	51	2.2	47	83	9	128	26	17	28	28	1.98
62424698--62424798	51	2.0	51	94	0	175	28	16	24	29	1.97
62424810--62425053	51	4.8	51	76	2	222	29	17	23	28	1.97
62424695--62424925	123	1.9	123	93	0	399	30	16	25	28	1.97
62424810--62425054	102	2.4	102	88	1	348	30	17	23	28	1.97
62426989--62427027	18	2.2	18	85	0	51	30	7	0	61	1.24
62427174--62427244	2	36.5	2	73	5	56	42	7	1	49	1.38
62427197--62427291	41	2.3	38	73	22	75	38	9	1	50	1.42
62431187--62431222	17	2.1	17	90	10	56	66	5	0	27	1.13
62432183--62432239	27	2.2	26	81	6	62	43	5	24	26	1.75
62436337--62436395	31	1.9	31	82	6	75	22	16	8	52	1.70
62440520--62440556	9	4.1	9	85	0	56	45	16	10	27	1.80
62444032--62444057	3	8.7	3	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62450201--62450272	33	2.2	33	94	2	126	45	8	1	44	1.42
62451882--62451934	17	3.1	17	83	2	70	50	1	22	24	1.59
62457336--62457360	8	3.1	8	100	0	50	48	28	0	24	1.52
62460253--62461049	134	5.9	134	97	0	1436	26	20	23	29	1.99
62460305--62461038	46	16.4	46	63	14	192	26	20	23	29	1.99
62461175--62461326	40	3.8	40	81	6	198	30	22	21	26	1.99
62461173--62461342	82	2.1	83	89	1	270	33	22	18	25	1.97
62461174--62461342	40	4.1	42	76	10	152	33	22	18	25	1.97
62462301--62462340	11	3.6	11	83	12	55	0	52	0	47	1.00
62462804--62462871	3	22.3	3	73	8	57	30	1	5	61	1.28
62462811--62462882	23	3.1	23	82	7	56	31	4	9	54	1.52
62462903--62462950	24	2.0	24	84	12	62	29	4	0	66	1.10
62466792--62466826	17	2.1	17	89	10	54	65	5	0	28	1.15
62466825--62466851	12	2.2	12	100	0	54	51	0	0	48	1.00
62467302--62467359	27	2.2	27	84	6	75	43	3	27	25	1.71
62467841--62470730	978	3.0	978	97	1	5448	30	22	17	28	1.97
62471822--62472427	302	2.0	303	99	0	1205	28	22	20	28	1.99
62472125--62488390	979	16.6	979	99	0	32507	30	23	17	28	1.97
62493007--62493045	20	2.0	20	85	10	53	7	23	2	66	1.30
62498439--62498517	31	2.5	31	80	9	90	20	16	8	54	1.68
62499595--62499663	31	2.2	31	89	0	102	50	10	18	20	1.75
62503455--62503511	24	2.3	24	78	3	69	54	5	8	31	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62507899--62508037	69	2.0	69	100	0	278	51	17	5	25	1.67
62509071--62509209	69	2.0	69	100	0	278	51	17	5	25	1.67
62520434--62520499	28	2.3	31	84	10	86	63	3	6	27	1.32
62520441--62520548	56	2.0	56	82	10	134	61	2	5	30	1.33
62525729--62525790	31	2.0	31	100	0	124	29	6	35	29	1.82
62540594--62540651	18	2.9	21	78	19	70	34	18	43	3	1.68
62540528--62540725	105	1.9	105	82	2	254	39	18	29	12	1.87
62540544--62540759	105	2.1	104	79	8	224	40	16	30	12	1.85
62540892--62540942	26	2.0	26	84	7	68	39	5	0	54	1.24
62541080--62541279	86	2.3	86	81	8	237	27	19	29	24	1.98
62541080--62541283	43	4.7	42	82	6	214	26	20	28	24	1.99
62541188--62541395	112	1.8	113	82	3	267	26	19	26	26	1.99
62541299--62541408	42	2.6	42	83	1	130	24	18	27	30	1.98
62542358--62542406	24	2.0	26	88	8	75	28	24	4	42	1.73
62543154--62543229	27	2.7	27	81	16	93	77	0	21	1	0.84
62543156--62543229	37	1.9	40	86	8	109	77	0	21	1	0.85
62543156--62543228	19	3.9	18	77	12	67	76	0	21	1	0.86
62543771--62543817	17	2.8	17	80	0	58	42	6	8	42	1.60
62543782--62543898	54	2.2	54	85	3	155	30	11	11	46	1.76
62543782--62543905	17	6.9	17	78	13	124	33	11	11	44	1.76
62543791--62543923	37	3.6	37	79	10	121	37	10	9	42	1.73
62545106--62545164	28	2.1	28	100	0	118	52	10	16	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62545332--62545367	5	7.2	5	100	0	72	38	0	0	61	0.96
62554187--62554242	27	2.1	27	100	0	112	32	17	23	26	1.97
62557278--62557322	23	2.0	22	83	12	56	17	11	2	68	1.29
62566854--62566889	8	4.4	8	86	6	54	27	0	0	72	0.85
62566852--62566884	17	1.9	17	100	0	66	27	0	0	72	0.85
62570577--62570609	2	16.5	2	100	0	66	48	0	0	51	1.00
62571229--62571280	27	1.9	27	84	0	68	21	15	7	55	1.64
62575308--62575472	27	6.1	27	82	0	179	46	21	12	19	1.82
62575315--62575473	54	3.0	54	85	0	221	47	21	11	20	1.81
62575315--62575470	81	1.9	80	85	1	213	47	21	10	19	1.80
62584791--62585265	9	56.2	9	71	14	313	30	2	21	45	1.64
62584791--62585265	34	13.9	34	76	13	295	30	2	21	45	1.64
62584804--62585220	25	16.8	25	75	11	296	31	2	21	44	1.64
62585162--62585243	7	10.6	7	79	10	56	28	0	23	48	1.51
62584994--62585261	32	7.9	32	80	10	230	30	1	22	45	1.60
62585418--62585912	121	4.1	121	91	2	660	47	4	9	39	1.55
62585701--62585755	26	2.2	25	78	9	58	52	1	1	43	1.22
62588871--62588920	14	3.5	14	80	2	55	40	38	0	22	1.54
62588849--62588899	21	2.5	20	81	9	57	35	47	0	17	1.48
62589115--62589839	114	6.5	111	76	8	528	29	20	19	30	1.97
62594718--62594754	9	4.1	9	89	0	56	45	10	10	32	1.74
62594967--62595026	30	2.0	31	86	3	86	21	38	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62595673--62595698	5	5.2	5	100	0	52	23	19	19	38	1.93
62598780--62599175	109	3.7	110	88	4	546	34	20	16	28	1.94
62599226--62599267	21	2.0	20	86	4	57	52	2	19	26	1.58
62599446--62599501	26	2.2	26	83	6	69	58	0	7	33	1.25
62601624--62602151	132	4.0	132	95	0	921	26	23	18	30	1.98
62601844--62602040	44	4.5	44	68	12	134	24	24	20	30	1.99
62604208--62604251	6	7.3	6	82	10	54	2	15	0	81	0.78
62604209--62604249	7	5.6	7	83	11	55	2	12	0	85	0.70
62604204--62604259	23	2.5	21	77	11	58	3	19	0	76	0.93
62604205--62604260	24	2.4	23	77	11	62	3	19	0	76	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226