genome.fa.s24.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  203  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60760799--60760849	27	2.0	26	82	14	63	43	7	3	45	1.51
60761979--60762012	7	4.9	7	96	0	59	44	32	0	23	1.54
60764545--60764575	5	6.2	5	100	0	62	38	19	0	41	1.51
60767958--60768215	73	3.5	73	95	1	473	41	24	5	28	1.77
60772463--60772648	73	2.5	73	96	0	345	40	23	6	29	1.79
60774803--60774852	25	2.0	25	100	0	100	40	4	8	48	1.51
60782369--60782409	17	2.4	17	87	4	55	60	2	0	36	1.10
60782480--60782552	38	1.9	38	82	0	92	54	2	10	31	1.49
60783275--60783309	18	1.9	18	94	0	61	65	2	0	31	1.07
60783275--60783310	19	1.9	18	88	5	54	66	2	0	30	1.06
60783462--60783514	17	3.2	16	75	20	56	47	24	1	26	1.62
60800370--60800606	43	5.9	43	83	7	227	29	32	16	21	1.95
60800454--60800561	36	3.0	36	93	0	180	26	35	15	22	1.94
60805960--60806242	41	6.9	41	94	0	494	27	30	20	21	1.98
60806213--60806339	41	3.2	39	80	4	137	22	21	19	36	1.95
60809343--60809395	16	3.3	16	74	10	54	37	24	5	32	1.79
60809580--60809714	41	3.4	41	84	5	163	31	24	19	24	1.98
60810596--60810625	15	1.9	16	93	6	53	0	20	0	80	0.72
60810598--60810635	19	2.0	19	85	10	51	0	23	2	73	0.95
60812852--60812895	18	2.4	18	81	7	54	43	15	0	40	1.47
60813160--60813215	14	3.8	14	75	13	58	1	25	3	69	1.14
60813189--60813232	22	2.0	22	82	4	54	2	18	2	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60813199--60813246	9	5.3	9	83	16	55	6	14	0	79	0.92
60813745--60814144	209	1.9	207	84	4	536	24	16	14	45	1.84
60826938--60826976	21	2.0	20	90	10	62	41	30	2	25	1.69
60829008--60829037	8	3.8	8	95	0	51	60	3	0	36	1.14
60838852--60838885	18	1.9	18	88	5	52	41	2	0	55	1.15
60841066--60841117	4	12.8	4	80	11	61	25	3	0	71	1.03
60842266--60842314	2	24.5	2	95	0	89	0	46	0	53	1.00
60843757--60844441	352	1.9	351	99	0	1352	35	10	18	35	1.85
60847882--60847915	18	1.9	18	88	5	52	41	2	0	55	1.15
60850097--60850148	4	12.8	4	80	11	61	25	3	0	71	1.03
60851297--60851334	2	19.0	2	100	0	76	0	50	0	50	1.00
60854695--60854723	9	3.2	9	100	0	58	41	0	0	58	0.98
60870703--60870895	47	4.0	48	81	8	196	23	17	28	30	1.97
60873603--60873659	13	4.4	13	79	14	64	36	14	1	47	1.54
60873605--60873720	40	2.9	40	79	6	121	33	15	4	46	1.65
60873688--60873739	27	1.9	27	81	14	63	34	19	1	44	1.62
60873668--60873757	40	2.3	40	82	1	101	34	18	4	42	1.71
60881595--60883204	213	7.6	213	91	2	2497	33	20	17	28	1.95
60888254--60888281	9	3.1	9	100	0	56	57	10	0	32	1.33
60888224--60888365	68	2.1	66	93	2	239	45	8	4	40	1.56
60888354--60888395	16	2.6	16	92	0	66	42	7	2	47	1.43
60888369--60888424	23	2.5	23	82	2	69	44	1	1	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60888881--60888907	3	9.0	3	100	0	54	33	33	33	0	1.58
60890233--60890278	22	2.1	22	91	0	74	34	13	4	47	1.62
60893362--60893402	21	2.0	21	90	0	64	29	21	29	19	1.98
60901776--60901809	15	2.3	15	89	0	50	55	11	17	14	1.68
60901903--60901958	18	3.1	19	76	20	57	69	5	5	19	1.28
60908218--60908276	32	1.9	32	89	6	95	37	0	1	61	1.07
60908245--60908284	18	2.2	19	86	4	55	35	0	0	65	0.93
60909777--60909831	16	3.1	18	87	10	69	60	1	0	38	1.08
60920455--60920479	3	8.3	3	100	0	50	64	0	36	0	0.94
60921988--60922012	13	1.9	13	100	0	50	64	0	0	36	0.94
60925832--60925878	24	2.0	24	86	0	67	40	2	6	51	1.39
60926444--60926496	19	2.9	19	66	23	51	54	15	1	28	1.51
60927361--60927402	22	1.9	22	85	0	57	11	7	16	64	1.48
60927640--60927690	25	2.0	25	96	0	93	49	5	15	29	1.68
60927966--60928000	17	1.9	19	88	11	56	42	0	5	51	1.25
60928653--60928932	154	1.9	147	90	6	445	30	18	18	31	1.95
60929752--60929783	15	2.1	15	94	5	55	71	0	0	28	0.86
60929918--60929953	18	1.9	19	88	5	56	36	0	0	63	0.94
60929918--60929971	18	3.1	18	80	17	53	35	0	0	64	0.94
60930164--60930585	219	1.9	219	99	0	835	31	27	15	24	1.96
60935147--60936811	213	7.8	211	89	2	2338	33	21	17	27	1.95
60952654--60952713	19	3.1	19	79	13	68	56	1	3	38	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60955448--60955481	6	5.7	6	100	0	68	0	64	0	35	0.94
60956809--60956853	22	2.0	22	82	0	54	53	4	2	40	1.33
60972098--60972155	20	2.6	22	89	10	84	31	39	8	20	1.83
60972098--60972147	24	2.1	24	100	0	100	34	38	8	20	1.82
60972718--60972898	25	7.3	25	84	5	215	31	1	18	48	1.58
60972718--60972900	41	4.4	41	77	12	155	31	1	19	47	1.59
60972725--60972900	9	21.0	9	76	12	153	31	1	19	47	1.60
60979149--60979194	17	2.8	18	84	15	64	28	41	30	0	1.56
60979832--60979932	9	11.9	9	74	12	79	32	0	19	46	1.57
60979826--60979898	16	4.4	17	80	13	64	32	1	17	47	1.56
60979826--60979933	25	4.3	25	89	0	153	31	0	19	48	1.55
60980913--60980949	19	2.0	19	89	5	58	72	8	2	16	1.19
60981414--60981467	23	2.5	22	87	6	74	59	7	1	31	1.36
60981417--60981487	3	23.3	3	74	8	63	61	5	1	30	1.27
60981950--60981987	11	3.2	12	88	11	60	47	0	52	0	1.00
60982476--60982500	8	3.1	8	100	0	50	24	12	52	12	1.72
60982642--60982862	9	26.2	9	78	13	222	30	2	19	47	1.63
60982642--60982856	25	8.6	25	82	8	162	30	2	19	47	1.64
60982657--60982856	34	6.0	33	79	11	164	30	2	19	48	1.62
60985100--60985134	18	1.9	19	88	11	56	34	2	0	62	1.10
60985087--60985182	30	3.3	29	75	17	83	39	5	0	55	1.22
60985177--60985235	30	2.0	30	83	6	75	52	1	3	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60996381--60996462	6	13.7	6	96	0	146	18	1	15	64	1.35
60999054--60999097	21	2.1	21	84	16	56	54	0	6	38	1.27
61000054--61000087	16	2.1	17	88	5	52	76	5	0	17	0.98
61003605--61003640	15	2.4	15	90	0	54	55	8	2	33	1.44
61004282--61004346	3	21.7	3	100	0	130	66	0	33	0	0.92
61008577--61008614	16	2.4	16	91	8	60	23	0	7	68	1.16
61010070--61010102	17	1.9	17	93	0	57	45	9	24	21	1.80
61015112--61015141	11	2.6	11	94	5	51	80	3	6	10	1.01
61016091--61016687	46	13.4	45	65	9	150	29	23	19	27	1.98
61016071--61016741	88	7.6	88	66	10	292	29	23	20	27	1.99
61016079--61016524	46	10.0	46	67	12	255	29	23	20	26	1.99
61016079--61016761	134	5.1	134	92	0	1154	29	23	19	27	1.98
61016003--61016761	268	2.8	266	90	0	1167	29	23	20	27	1.98
61016704--61017151	44	10.2	44	73	7	327	29	26	15	28	1.96
61016712--61017153	219	2.0	222	93	2	766	29	26	15	28	1.96
61018157--61018206	7	7.4	7	80	14	61	4	14	0	82	0.82
61018157--61018213	12	4.4	13	83	14	64	5	14	0	80	0.87
61018156--61018206	6	7.8	6	81	16	50	3	15	0	80	0.86
61018633--61018696	11	5.6	11	78	12	58	4	7	7	79	1.04
61018633--61018698	22	3.0	23	80	4	82	4	9	9	77	1.12
61026236--61026265	11	2.6	11	94	5	51	80	3	6	10	1.01
61029491--61029536	23	2.0	23	95	4	85	41	8	17	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61033245--61033271	3	9.0	3	100	0	54	66	0	33	0	0.92
61033754--61033796	20	2.1	21	82	4	52	58	0	2	39	1.11
61033936--61033967	15	2.1	15	94	5	55	71	0	0	28	0.86
61037219--61041015	213	17.8	213	85	3	4395	33	20	15	30	1.94
61048099--61050182	213	9.8	213	92	0	3267	33	20	17	29	1.95
61059724--61059766	16	2.7	16	100	0	86	62	11	13	11	1.54
61062032--61062101	22	3.2	22	90	8	115	31	28	1	38	1.66
61062073--61062131	30	2.0	30	93	0	100	30	35	0	33	1.58
61062051--61062153	52	2.0	51	86	5	145	33	32	0	33	1.65
61062103--61062144	22	1.9	22	90	0	66	33	33	0	33	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226