genome.fa.s24.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  166  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51252603--51252662	28	2.1	28	87	6	86	41	15	20	23	1.89
51255297--51255325	12	2.3	13	94	5	51	44	0	0	55	0.99
51263747--51263854	15	7.2	15	69	12	87	25	23	7	43	1.79
51263737--51263860	30	4.1	30	95	1	212	25	25	6	42	1.78
51268431--51268538	15	7.2	15	69	12	87	25	23	7	43	1.79
51268421--51268544	30	4.1	30	95	1	212	25	25	6	42	1.78
51271159--51271203	17	2.6	18	77	22	51	57	0	6	35	1.25
51273530--51273580	27	2.0	26	92	7	86	58	3	5	31	1.40
51274042--51274069	9	3.1	9	100	0	56	75	0	0	25	0.81
51274340--51274471	19	6.8	19	89	3	210	36	15	9	38	1.80
51274333--51274470	59	2.4	59	90	4	212	36	14	9	39	1.79
51274637--51275242	217	2.8	217	93	0	1023	27	23	20	29	1.99
51274656--51275244	44	13.6	43	71	11	325	27	22	20	28	1.99
51275230--51275882	132	4.9	132	96	0	1180	23	25	21	29	1.99
51275322--51275772	44	10.2	44	64	12	199	24	25	21	28	1.99
51277091--51277118	10	2.8	10	100	0	56	0	0	10	89	0.49
51278002--51278029	9	3.1	9	100	0	56	75	0	0	25	0.81
51278299--51278430	19	6.8	19	90	3	210	35	15	10	38	1.82
51278299--51278430	59	2.3	57	89	5	210	35	15	10	38	1.82
51279589--51279815	126	1.8	123	83	5	276	35	0	36	28	1.61
51282345--51282648	40	7.7	40	96	2	560	21	27	20	29	1.98
51290570--51290915	40	8.7	40	96	0	631	21	28	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51298123--51298155	16	2.1	16	94	0	57	45	3	0	51	1.16
51298129--51298161	9	3.9	9	84	15	52	51	0	0	48	1.00
51298132--51298179	22	2.3	20	82	10	60	54	0	0	45	0.99
51298707--51298782	33	2.3	33	95	0	134	48	19	5	26	1.70
51299465--51299577	40	2.8	40	80	8	131	31	16	24	26	1.96
51299647--51299851	41	4.8	41	84	10	275	18	21	33	27	1.96
51299647--51299851	91	2.4	87	87	7	285	18	21	33	27	1.96
51299746--51299842	50	1.9	50	91	4	160	20	19	32	26	1.97
51299971--51300104	66	2.0	66	95	0	241	44	5	8	41	1.59
51300118--51300265	78	1.9	74	89	5	224	20	5	29	44	1.73
51300244--51300292	15	3.4	15	78	18	59	20	0	32	46	1.51
51300274--51300321	21	2.3	21	77	0	60	20	0	35	43	1.52
51300340--51300378	20	1.9	20	89	5	60	23	0	25	51	1.49
51303834--51303876	21	2.0	21	100	0	86	27	13	34	23	1.93
51304748--51304814	35	1.9	35	81	6	82	38	2	2	55	1.31
51304932--51305185	42	6.0	42	88	1	312	22	18	32	26	1.97
51305278--51305627	124	2.8	124	96	0	628	29	17	21	32	1.96
51308734--51308879	65	2.2	65	85	8	190	47	6	8	37	1.60
51308797--51308823	10	2.7	10	100	0	54	51	0	7	40	1.30
51308845--51308879	18	1.9	18	94	0	61	51	2	8	37	1.47
51308742--51309055	121	2.6	121	96	0	574	46	5	10	37	1.62
51308918--51308944	10	2.7	10	100	0	54	51	0	7	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51308966--51309000	18	1.9	18	100	0	70	51	2	11	34	1.53
51308973--51309109	55	2.5	55	97	0	256	43	6	13	36	1.70
51309116--51309157	18	2.3	18	91	0	66	33	0	19	47	1.49
51309135--51309216	29	2.8	29	90	0	137	28	1	25	45	1.61
51309104--51309480	47	7.5	48	74	18	227	27	0	26	45	1.57
51309107--51309567	76	6.1	76	85	4	522	26	0	26	46	1.58
51309193--51309281	18	5.3	18	75	22	104	26	0	25	47	1.53
51309421--51309462	18	2.3	18	100	0	84	26	0	26	47	1.52
51309288--51309491	47	4.1	47	80	13	237	25	0	27	46	1.57
51309258--51309444	29	6.8	29	76	19	179	25	0	29	45	1.54
51309468--51309585	47	2.5	47	87	0	182	27	0	26	45	1.59
51309497--51309592	18	5.7	18	72	16	80	27	0	25	47	1.52
51309588--51309656	25	2.7	25	81	2	84	39	10	2	47	1.52
51310060--51310094	18	1.9	18	88	0	52	31	8	34	25	1.86
51311859--51311920	31	2.1	30	90	6	99	64	0	3	32	1.09
51311917--51312029	51	2.2	51	95	0	199	41	0	29	29	1.56
51312001--51312051	22	2.3	22	96	0	93	39	0	31	29	1.57
51313361--51313390	15	2.1	14	93	6	51	23	0	33	43	1.54
51313400--51313436	14	2.5	15	95	4	67	18	0	45	35	1.50
51313385--51313490	50	2.1	50	82	3	124	22	0	33	43	1.60
51313534--51313582	22	2.3	21	79	10	55	20	0	42	36	1.52
51313372--51313582	7	29.7	7	68	11	54	22	0	35	42	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51313601--51313698	21	4.6	21	74	12	67	24	0	39	35	1.56
51313551--51313769	120	1.8	122	85	8	313	25	0	32	41	1.59
51313775--51313822	15	3.3	15	85	5	71	16	0	39	43	1.48
51313775--51313822	7	6.6	7	83	7	60	16	0	39	43	1.48
51314125--51314365	124	1.9	125	88	4	362	32	15	15	36	1.89
51317107--51317309	43	4.8	43	78	3	196	29	17	24	29	1.97
51317134--51317310	42	4.2	42	79	2	176	27	16	23	32	1.96
51317143--51317310	85	2.0	85	86	2	239	27	17	23	31	1.97
51317339--51317379	21	2.0	21	85	0	55	43	29	14	12	1.82
51333906--51334231	46	7.6	45	81	14	388	34	14	22	28	1.93
51333988--51334142	36	4.0	36	79	15	184	36	13	21	28	1.91
51333942--51334188	82	3.0	82	94	0	431	35	14	21	28	1.93
51334942--51335097	84	1.8	85	83	6	210	28	21	22	27	1.99
51334942--51335314	44	8.6	44	73	10	252	28	21	23	26	1.99
51335021--51335351	85	3.8	85	76	9	294	28	21	23	26	1.99
51334942--51335262	129	2.5	128	81	4	396	28	22	23	26	1.99
51335024--51335358	173	1.9	173	83	6	428	28	21	23	26	1.99
51337101--51337137	20	1.9	18	89	10	56	16	8	5	70	1.30
51342472--51342603	54	2.4	53	88	7	194	14	18	43	24	1.87
51343233--51343276	18	2.3	19	84	11	54	36	0	4	59	1.18
51350070--51350094	12	2.1	12	100	0	50	24	16	16	44	1.86
51354226--51354355	65	2.0	65	92	3	217	19	12	13	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51354384--51354409	13	2.0	13	100	0	52	30	15	0	53	1.42
51356619--51356658	12	3.3	12	89	0	62	25	7	0	67	1.16
51356619--51356658	3	13.3	3	83	0	53	25	7	0	67	1.16
51358578--51358617	17	2.5	16	84	11	55	57	0	7	35	1.27
51363223--51363274	24	2.2	24	85	0	68	55	7	3	32	1.46
51368144--51368170	6	4.5	6	100	0	54	14	29	18	37	1.91
51375931--51376010	25	3.2	25	87	0	106	21	27	17	33	1.96
51381793--51381851	26	2.3	26	90	0	91	37	11	13	37	1.82
51389970--51390005	18	1.9	19	94	5	65	61	5	8	25	1.46
51390053--51390096	13	3.5	13	87	6	72	77	6	2	13	1.07
51391085--51391188	12	8.4	12	73	12	68	73	1	18	6	1.15
51391105--51391146	18	2.3	18	83	0	57	73	4	14	7	1.21
51398006--51398052	18	2.6	18	100	0	94	40	4	17	38	1.69
51398749--51398864	25	4.6	25	82	4	135	24	26	19	29	1.99
51408496--51408533	14	2.8	13	88	7	58	39	0	0	60	0.97
51429947--51430034	26	3.4	26	69	25	78	31	9	0	59	1.29
51429919--51430036	51	2.3	52	95	1	211	33	9	0	56	1.31
51430899--51430938	16	2.5	16	83	0	53	62	0	0	37	0.95
51434352--51434425	30	2.5	31	71	10	73	48	0	1	50	1.09
51438593--51438641	8	6.4	8	88	6	75	24	0	2	73	0.94
51438587--51438641	23	2.5	22	85	11	76	23	0	1	74	0.91
51438587--51438641	15	3.7	15	90	7	85	23	0	1	74	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51438591--51438653	23	2.8	23	83	9	69	22	1	1	74	0.99
51439747--51440063	107	2.9	108	80	7	365	33	12	22	31	1.92
51439963--51440419	225	2.0	225	96	0	835	33	11	22	33	1.89
51445168--51445436	73	3.6	72	89	5	387	31	18	17	33	1.94
51445283--51445582	158	1.9	158	82	2	379	35	20	17	27	1.95
51445355--51445531	85	2.1	86	78	8	200	39	18	15	26	1.90
51445615--51445783	72	2.3	74	85	5	252	31	17	16	34	1.93
51445442--51446188	200	3.7	200	92	1	1185	34	18	16	29	1.93
51445816--51446284	72	6.6	72	74	11	392	33	17	15	32	1.92
51446016--51446266	78	3.3	77	83	8	334	30	19	15	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226