genome.fa.s24.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  133  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41361071--41361182	27	4.1	27	88	2	109	28	33	12	25	1.92
41361071--41361165	9	10.6	9	76	0	91	28	32	11	27	1.91
41361300--41361383	41	2.0	41	93	0	141	30	10	10	47	1.72
41363006--41363080	37	2.0	37	100	0	150	22	16	32	29	1.95
41364494--41364588	27	3.5	27	79	0	82	28	28	12	30	1.93
41367361--41367437	20	3.8	20	87	0	100	28	25	18	27	1.98
41367361--41367468	40	2.7	40	80	8	114	28	24	16	30	1.96
41369404--41369567	39	4.3	38	83	6	183	27	28	20	23	1.99
41369438--41369620	78	2.3	78	82	8	212	27	28	20	23	1.99
41369441--41369567	39	3.3	39	88	1	184	27	28	20	23	1.99
41376976--41377159	40	4.6	39	77	8	165	27	27	21	23	1.99
41376939--41377159	80	2.8	80	78	7	193	26	27	21	24	1.99
41376979--41377159	80	2.3	80	83	9	210	27	27	21	23	1.99
41380625--41380663	21	1.9	20	89	5	60	66	2	25	5	1.25
41380624--41380675	27	1.9	27	84	0	68	65	1	26	5	1.26
41380668--41380702	18	1.9	18	88	11	54	68	2	14	14	1.32
41382478--41382591	10	11.6	9	68	18	59	25	27	18	28	1.98
41382478--41382591	20	5.8	20	90	3	160	25	27	18	28	1.98
41393948--41394177	40	5.8	40	91	1	327	25	21	28	24	1.99
41404079--41404270	105	1.8	105	88	0	294	20	21	27	29	1.98
41408964--41409148	79	2.3	81	84	7	236	25	27	22	24	2.00
41408964--41409148	40	4.7	40	83	7	234	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41416943--41417127	79	2.3	81	84	7	236	25	27	22	24	2.00
41416943--41417127	40	4.7	40	83	7	234	25	27	22	24	2.00
41421087--41421122	11	3.4	11	88	3	56	63	8	5	22	1.43
41423620--41423682	28	2.3	28	91	2	101	31	25	20	22	1.98
41424035--41424435	27	14.9	27	78	2	376	19	15	21	43	1.88
41432222--41432296	33	2.2	34	90	2	116	42	12	6	38	1.68
41433412--41433464	27	2.0	27	88	0	79	7	26	0	66	1.18
41434296--41434321	11	2.4	11	100	0	52	57	0	23	19	1.40
41439009--41439057	24	2.0	24	100	0	98	40	8	12	38	1.72
41439013--41439064	24	2.2	24	92	0	86	44	9	9	36	1.70
41440555--41440599	20	2.2	20	84	7	56	53	11	4	31	1.56
41442495--41442551	26	2.2	26	84	6	71	14	24	0	61	1.33
41452378--41452421	20	2.2	20	95	0	79	25	22	15	36	1.94
41454485--41454539	27	2.1	26	83	10	67	52	12	16	18	1.74
41461913--41461944	15	2.1	15	94	0	55	6	31	0	62	1.20
41462963--41462996	9	3.9	9	88	7	52	8	2	5	82	0.93
41466439--41466516	39	2.0	39	97	0	147	50	7	8	33	1.63
41469500--41469613	43	2.7	43	87	2	158	28	34	16	21	1.95
41470506--41470990	23	21.3	23	73	12	342	40	23	6	29	1.79
41470543--41470988	137	3.3	137	94	1	788	40	23	6	29	1.79
41471325--41471408	39	2.1	39	86	4	114	51	7	11	29	1.65
41474029--41474365	149	2.4	135	86	9	404	30	14	10	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41474373--41474402	15	2.0	15	93	0	51	36	0	0	63	0.95
41474962--41475048	8	11.5	8	81	16	96	36	40	0	22	1.55
41474948--41475046	23	4.4	23	81	9	89	35	40	1	23	1.61
41474958--41475048	16	6.1	15	80	9	107	35	41	0	23	1.54
41474958--41475060	8	14.0	7	76	10	75	36	39	0	23	1.55
41475029--41475075	15	3.3	15	82	14	55	40	34	0	25	1.56
41475227--41475295	33	2.1	33	83	0	84	39	39	2	18	1.66
41476151--41476390	41	5.9	41	85	7	337	30	27	23	18	1.98
41476151--41476387	81	2.9	80	87	7	336	30	27	23	18	1.98
41476439--41476561	40	3.1	39	82	4	140	23	22	18	34	1.96
41478117--41478168	20	2.5	21	78	12	63	40	13	25	21	1.89
41479973--41480089	54	2.1	56	92	6	204	44	9	23	23	1.82
41482565--41482738	27	6.6	27	80	8	171	27	15	28	28	1.96
41482566--41482719	81	1.9	79	87	7	222	27	15	28	28	1.96
41487437--41487522	40	2.1	41	87	6	122	24	19	26	29	1.99
41502867--41502986	56	2.1	56	98	0	231	45	9	23	22	1.81
41504116--41504339	40	5.7	40	86	5	287	24	21	28	25	1.99
41504116--41504339	79	2.8	80	85	6	287	24	21	28	25	1.99
41504116--41504337	119	1.9	119	83	5	297	24	22	27	25	2.00
41504116--41504372	119	2.2	119	81	6	290	25	21	27	25	1.99
41506335--41506430	6	16.5	6	70	6	72	8	18	1	71	1.16
41506335--41506392	24	2.4	24	88	0	80	10	18	1	68	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41506335--41506430	18	5.5	17	77	8	88	8	18	1	71	1.16
41506352--41506418	24	2.8	23	88	6	98	8	17	1	71	1.19
41508671--41508717	20	2.3	20	81	0	58	36	17	21	25	1.94
41511843--41511893	20	2.5	20	87	6	68	74	1	19	3	1.07
41513632--41513703	33	2.1	34	87	2	101	38	8	11	41	1.71
41516330--41516365	18	2.1	17	89	5	54	5	11	5	77	1.10
41517333--41517366	11	3.0	12	87	12	54	23	5	8	61	1.47
41520914--41520991	39	2.0	39	97	0	147	52	7	7	32	1.58
41521201--41521226	9	2.9	9	100	0	52	34	11	11	42	1.77
41525772--41526718	47	19.6	47	90	4	1390	29	28	8	33	1.86
41525772--41526718	96	9.8	95	90	5	1420	29	28	8	33	1.86
41525772--41526718	294	3.3	294	96	1	1698	29	28	8	33	1.86
41529543--41529567	9	2.8	9	100	0	50	92	0	0	8	0.40
41531476--41531515	20	2.0	20	95	0	71	32	15	27	25	1.95
41538695--41539061	47	7.6	47	87	5	475	33	7	28	29	1.85
41538695--41539061	153	2.5	143	86	7	483	33	7	28	29	1.85
41556615--41556923	161	1.9	161	86	2	433	28	17	15	38	1.90
41566548--41566596	25	2.0	25	87	0	71	24	8	44	22	1.79
41568063--41568107	20	2.2	21	80	11	58	24	33	15	26	1.95
41568072--41568116	20	2.2	20	92	0	72	24	26	15	33	1.95
41568255--41568303	23	2.2	22	82	7	55	28	0	6	65	1.16
41576668--41576723	27	2.1	27	83	6	71	10	23	1	64	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41593252--41593276	12	2.1	12	100	0	50	24	28	0	48	1.52
41593346--41593395	21	2.4	22	80	16	61	6	20	8	66	1.40
41594956--41594997	18	2.3	18	84	8	50	47	9	4	38	1.57
41596369--41596417	20	2.5	20	75	0	53	12	32	2	53	1.50
41599476--41599547	30	2.4	30	85	0	90	30	8	34	26	1.86
41600941--41600966	10	2.6	10	100	0	52	23	7	0	69	1.14
41604759--41604795	18	2.0	19	89	5	58	75	2	16	5	1.10
41615114--41615152	16	2.4	16	87	8	53	74	5	10	10	1.21
41618121--41618194	37	2.0	37	100	0	148	21	43	8	27	1.80
41620384--41620422	18	2.2	17	82	13	51	5	17	2	74	1.12
41623310--41623362	23	2.3	23	83	9	63	30	13	11	45	1.78
41624706--41624735	12	2.5	12	100	0	60	73	0	6	20	1.05
41627911--41628007	45	2.2	43	89	7	149	65	4	15	14	1.41
41627912--41628008	44	2.2	46	92	3	162	67	4	14	14	1.38
41628714--41628753	12	3.3	12	78	0	53	72	2	15	10	1.21
41628749--41628783	6	5.8	6	100	0	70	51	14	17	17	1.77
41628738--41628777	18	2.2	18	86	0	53	57	10	17	15	1.64
41628800--41628861	33	1.9	32	86	3	88	59	0	22	17	1.37
41634679--41634753	33	2.2	34	90	2	116	42	12	8	37	1.71
41636512--41636550	18	2.2	17	82	13	51	5	17	2	74	1.12
41637472--41637513	18	2.3	18	80	8	50	11	2	2	83	0.84
41655603--41655635	17	1.9	17	100	0	66	21	12	36	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41657345--41657401	30	2.0	28	86	13	80	40	17	7	35	1.77
41661374--41661410	18	2.0	19	89	5	58	75	2	16	5	1.10
41663155--41663226	33	2.1	34	87	2	101	40	8	12	38	1.73
41665317--41665355	18	2.2	17	82	13	51	5	17	2	74	1.12
41674377--41674409	18	1.9	17	88	11	50	39	24	9	27	1.85
41676591--41676691	29	3.5	29	89	1	150	26	14	28	29	1.95
41678899--41678953	28	2.0	28	85	7	76	49	10	9	30	1.69
41695902--41695938	19	1.9	19	100	0	74	16	21	29	32	1.95
41696895--41696924	14	2.1	15	93	6	53	36	30	6	26	1.82
41697615--41697726	28	3.6	28	70	21	98	2	26	8	62	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226