genome.fa.s24.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  155  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48311721--48311790	24	3.0	24	85	2	88	48	21	8	21	1.76
48311753--48311824	24	3.0	24	85	4	83	44	20	5	29	1.74
48311856--48312121	27	9.8	26	72	11	155	22	17	20	39	1.92
48311847--48312120	81	3.4	80	79	3	289	22	17	19	40	1.92
48311844--48312121	54	5.2	53	75	10	206	22	18	19	39	1.92
48315508--48315537	15	2.0	15	100	0	60	26	13	20	40	1.89
48319348--48319377	16	1.9	16	93	6	53	30	0	20	50	1.49
48324095--48324166	27	2.7	27	85	8	94	27	19	13	38	1.90
48325635--48325692	21	2.7	22	73	7	57	50	8	0	41	1.33
48326108--48326160	23	2.4	22	83	3	70	28	0	5	66	1.15
48329069--48329136	34	2.0	35	88	8	104	44	11	7	36	1.69
48332873--48332953	21	3.9	21	75	6	83	7	43	14	34	1.74
48332874--48332963	42	2.1	42	81	4	101	7	42	15	34	1.76
48332941--48333079	66	2.1	66	88	5	201	14	28	17	38	1.89
48332941--48333104	66	2.5	66	85	4	179	14	26	18	40	1.89
48338489--48338932	9	51.8	9	65	24	171	32	1	21	44	1.60
48338549--48338932	25	15.2	26	77	15	270	32	0	22	44	1.58
48338549--48338625	13	6.1	13	69	22	65	33	0	22	44	1.53
48338653--48338701	19	2.6	19	83	0	62	32	2	22	42	1.65
48338593--48338869	128	2.1	128	77	18	306	33	1	22	42	1.60
48338788--48338828	19	2.2	19	86	8	57	31	0	17	51	1.46
48338852--48338935	43	2.0	43	85	0	114	26	0	25	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48339055--48339135	12	7.5	11	68	28	50	51	2	0	45	1.14
48341461--48341542	41	2.0	42	83	9	107	34	23	12	30	1.91
48342146--48342309	7	22.0	7	74	13	116	39	39	1	20	1.60
48342581--48342634	22	2.5	22	84	0	72	48	37	0	14	1.45
48342581--48342634	7	7.4	7	79	8	63	48	37	0	14	1.45
48342581--48342634	15	3.7	14	85	7	63	48	37	0	14	1.45
48342920--48343473	114	4.9	113	78	10	440	27	25	23	23	2.00
48342921--48343448	228	2.3	227	80	6	563	28	24	23	23	2.00
48356076--48356136	26	2.3	26	80	5	70	60	3	4	31	1.34
48356155--48356194	21	1.9	21	84	0	53	55	2	10	32	1.47
48358142--48358411	132	2.0	132	86	1	371	30	20	19	30	1.97
48358367--48359151	129	6.1	128	88	2	1108	24	23	19	32	1.97
48358333--48359152	385	2.1	386	86	2	1137	24	23	19	33	1.97
48360355--48360407	7	8.0	7	85	14	69	13	11	0	75	1.05
48365838--48365898	26	2.4	25	78	8	68	60	3	4	31	1.34
48365917--48365956	21	1.9	21	84	0	53	55	2	10	32	1.47
48367659--48367725	30	2.3	29	82	12	75	26	2	10	59	1.45
48369417--48369458	22	1.9	22	90	0	66	38	11	2	47	1.53
48375216--48375552	44	8.1	43	79	13	377	25	18	26	29	1.98
48375225--48375371	78	1.9	78	91	0	240	25	21	24	28	1.99
48375355--48375502	78	1.9	78	92	2	253	25	18	25	29	1.98
48375216--48375542	122	2.7	122	92	0	530	25	18	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48375433--48375745	44	7.2	44	75	13	179	28	18	24	28	1.98
48375426--48375759	88	3.8	88	72	11	244	29	18	24	27	1.98
48375477--48375849	172	2.1	175	87	5	526	30	19	24	26	1.98
48375848--48375900	20	2.7	20	75	0	52	30	0	1	67	1.01
48376053--48376086	12	2.8	12	90	0	59	50	14	0	35	1.44
48376198--48376242	23	2.0	22	86	4	63	31	2	4	62	1.27
48378005--48378035	16	1.9	16	93	0	53	48	9	6	35	1.62
48378180--48378229	24	2.0	24	84	7	64	48	2	2	48	1.24
48378203--48378258	19	3.1	19	82	12	64	37	0	5	57	1.22
48378203--48378257	18	3.1	18	84	10	60	38	0	5	56	1.23
48384881--48385046	27	6.1	27	77	0	161	38	18	19	23	1.93
48384881--48385046	81	2.0	81	82	2	199	38	18	19	23	1.93
48385069--48385177	24	4.5	24	83	0	110	25	5	22	46	1.73
48385259--48385311	27	2.0	27	81	7	63	22	26	20	30	1.98
48385349--48385555	32	6.5	32	77	7	179	19	19	22	38	1.94
48392498--48392550	24	2.2	24	86	6	72	37	5	11	45	1.64
48396423--48396452	15	1.9	16	93	6	53	26	0	0	73	0.84
48397184--48397255	22	3.1	23	76	11	76	52	1	1	44	1.18
48406877--48406932	26	2.2	26	100	0	112	50	0	14	35	1.43
48410795--48410821	8	3.4	8	100	0	54	40	0	0	59	0.98
48421344--48421379	17	2.1	17	89	5	54	52	16	22	8	1.70
48422521--48422600	31	2.7	29	81	7	90	52	10	15	22	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48423606--48423655	17	2.9	17	88	11	84	24	22	6	48	1.73
48424078--48424151	36	2.1	35	82	10	87	40	1	6	51	1.37
48424185--48424237	27	2.0	28	85	7	74	47	7	18	26	1.75
48424997--48425043	22	2.0	24	88	8	71	34	0	10	55	1.35
48427306--48427403	39	2.5	39	88	4	137	35	8	11	44	1.70
48427312--48427438	39	3.3	38	81	8	114	34	7	12	44	1.71
48434439--48434467	13	2.1	14	93	6	51	41	0	6	51	1.28
48435077--48435230	78	2.0	78	98	0	299	43	11	9	35	1.73
48440041--48440067	14	1.9	14	100	0	54	18	22	51	7	1.70
48440692--48440785	44	2.1	45	86	2	127	27	27	13	30	1.94
48440770--48441195	132	3.2	132	90	1	649	26	23	19	30	1.98
48440832--48441195	44	8.2	44	67	6	171	26	23	18	31	1.98
48441254--48441535	50	5.6	50	69	5	192	27	21	20	30	1.98
48441193--48441561	100	3.7	101	85	3	514	26	23	20	29	1.99
48441193--48441561	200	1.8	200	90	2	598	26	23	20	29	1.99
48442795--48442838	7	6.3	7	80	19	56	15	18	0	65	1.27
48442804--48442850	21	2.2	21	77	7	51	14	19	0	65	1.26
48448514--48448544	11	2.8	11	95	0	53	77	3	6	12	1.08
48448758--48448791	14	2.5	13	86	9	50	17	23	50	8	1.74
48448766--48448792	14	1.9	14	100	0	54	18	22	51	7	1.70
48454535--48454569	15	2.3	15	95	0	61	65	11	0	22	1.24
48459605--48459639	14	2.4	15	90	4	54	51	5	0	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48460423--48460475	7	7.7	7	81	12	56	75	3	0	20	0.96
48460423--48460476	26	2.1	25	93	3	90	74	3	0	22	0.98
48471678--48471724	11	4.3	11	76	10	51	72	8	0	19	1.10
48482959--48483001	21	2.0	21	82	8	52	46	6	2	44	1.43
48483111--48483219	41	2.7	41	80	8	123	32	22	19	26	1.97
48484876--48484900	13	1.9	13	100	0	50	40	24	4	32	1.73
48488080--48488124	23	2.0	22	82	4	54	35	13	20	31	1.91
48488286--48488361	29	2.7	29	83	4	102	25	18	26	30	1.98
48488291--48488361	14	5.0	15	69	16	53	22	19	28	29	1.98
48488429--48488462	15	2.3	15	94	0	59	32	23	20	23	1.98
48495788--48496029	116	2.1	116	99	0	475	41	14	17	26	1.88
48497244--48497281	20	1.9	20	88	0	58	26	2	5	65	1.27
48497407--48497718	86	3.7	85	86	1	378	31	11	11	45	1.77
48497511--48497754	85	3.0	81	82	7	255	31	12	11	45	1.76
48498654--48498900	57	4.4	56	81	9	263	25	14	4	55	1.59
48498654--48498900	84	3.0	83	83	7	277	25	14	4	55	1.59
48498654--48498900	112	2.2	112	82	8	290	25	14	4	55	1.59
48498654--48498905	28	9.0	28	78	10	230	25	15	4	54	1.60
48499378--48499501	45	2.7	45	87	3	169	24	20	15	40	1.90
48515700--48515893	51	3.8	52	79	8	211	24	16	29	29	1.96
48515902--48516242	42	8.1	42	80	9	381	20	16	26	36	1.94
48515902--48516197	84	3.5	84	96	0	538	20	15	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48527049--48527090	22	1.9	22	85	0	57	19	9	23	47	1.78
48529083--48529131	19	2.5	19	86	6	62	57	0	30	12	1.36
48529871--48529981	19	5.8	19	91	0	159	40	8	12	38	1.73
48529878--48529981	38	2.7	38	95	0	181	41	7	11	39	1.70
48529871--48529988	57	2.1	55	92	3	191	40	7	13	38	1.73
48529972--48530014	22	1.9	23	85	4	61	34	4	13	46	1.65
48530599--48530677	22	3.5	23	74	22	78	29	2	5	63	1.29
48535908--48536018	19	5.8	19	89	0	168	40	9	12	37	1.75
48535915--48536018	38	2.7	38	96	0	190	41	8	11	38	1.72
48535908--48536044	19	6.9	21	85	4	105	39	8	13	38	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226