genome.fa.s24.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  85  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26767637--26767671	15	2.4	15	90	4	54	48	0	8	42	1.33
26771584--26771639	12	4.9	11	77	14	51	19	5	0	75	1.00
26771586--26771639	17	3.2	17	79	10	65	18	5	0	75	0.98
26773252--26773286	15	2.4	15	90	4	54	48	0	8	42	1.33
26777085--26777135	26	2.0	25	85	11	68	15	3	39	41	1.66
26783433--26783461	14	2.1	14	100	0	58	17	20	13	48	1.81
26786611--26786635	12	2.1	12	100	0	50	48	0	12	40	1.40
26786641--26786717	36	2.1	36	82	0	91	61	7	9	22	1.52
26788371--26788399	13	2.1	14	93	6	51	41	0	0	58	0.98
26790315--26790364	26	1.9	26	100	0	100	58	6	8	28	1.51
26794358--26794407	23	2.4	19	80	12	55	72	4	6	18	1.22
26795031--26795120	13	6.5	13	73	20	51	68	1	1	28	1.03
26795061--26795121	18	3.6	18	78	19	67	68	0	0	31	0.89
26795059--26795116	28	2.1	27	87	6	80	68	0	0	31	0.89
26795637--26795666	13	2.2	13	94	5	51	83	0	6	10	0.81
26795629--26795670	21	2.0	21	86	9	59	80	0	7	11	0.88
26797696--26797736	6	6.5	6	89	10	64	80	0	0	19	0.71
26804759--26804794	16	2.2	17	90	5	56	27	5	2	63	1.30
26806228--26806291	22	3.0	23	80	19	68	21	15	12	50	1.77
26807685--26807823	46	3.0	46	94	0	242	29	25	10	34	1.89
26808570--26808617	17	2.9	17	90	3	71	54	18	0	27	1.44
26811302--26811368	31	2.2	29	84	5	80	47	0	1	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26815752--26815794	21	2.0	21	86	0	59	34	0	23	41	1.55
26816132--26816353	25	8.9	25	70	9	107	20	27	20	31	1.97
26816300--26816362	25	2.5	25	87	5	74	22	26	22	28	1.99
26816300--26816386	25	3.5	24	75	17	72	22	25	20	31	1.98
26822770--26822831	30	2.1	30	82	14	76	62	0	12	24	1.30
26823780--26823827	25	1.9	25	87	8	71	27	29	14	29	1.95
26823827--26823898	25	2.9	25	77	2	74	19	27	19	33	1.96
26823870--26823931	25	2.5	25	75	15	65	24	25	20	29	1.99
26837228--26837292	35	1.9	33	87	6	94	24	20	6	49	1.71
26837232--26837296	18	3.7	18	74	13	64	24	21	6	47	1.73
26846047--26846077	6	5.0	6	92	7	53	0	19	0	80	0.71
26846943--26847187	27	9.1	27	83	1	285	40	21	15	22	1.91
26847544--26847637	28	3.0	33	77	15	108	22	24	24	28	1.99
26850684--26850780	42	2.3	42	80	7	108	25	25	27	20	1.99
26854808--26854861	23	2.3	23	90	0	90	37	12	22	27	1.91
26860059--26860123	27	2.4	27	86	2	85	64	3	21	10	1.38
26860077--26860117	21	2.0	21	90	0	64	70	0	19	9	1.14
26867867--26867911	19	2.4	19	88	0	72	22	24	8	44	1.81
26878668--26878836	26	6.8	26	67	17	81	37	21	22	18	1.94
26879545--26879586	20	2.0	20	86	4	57	35	7	2	54	1.41
26879800--26879829	15	2.1	15	93	6	53	16	13	30	40	1.87
26887511--26887601	4	22.8	4	100	0	182	24	0	25	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26888166--26888362	50	4.0	50	81	1	216	23	14	26	35	1.93
26888166--26888362	99	2.0	100	82	1	243	23	14	26	35	1.93
26888152--26888377	50	4.5	50	79	1	202	23	13	27	34	1.93
26889549--26889789	119	2.0	119	100	0	482	43	22	7	26	1.80
26890070--26890246	39	4.5	39	81	0	183	44	20	6	28	1.76
26896301--26896398	50	2.0	50	95	0	178	35	31	3	29	1.73
26902232--26902298	12	5.8	11	91	3	53	28	1	0	70	0.96
26902225--26902287	6	10.3	6	94	1	108	30	0	0	69	0.88
26904498--26904582	25	3.4	25	78	13	77	22	23	17	36	1.95
26904499--26904619	50	2.4	50	81	2	136	24	22	18	34	1.96
26910112--26910147	18	1.9	19	88	5	56	19	5	11	63	1.46
26913898--26913934	19	1.9	19	100	0	74	40	0	10	48	1.38
26915778--26915911	11	12.9	11	72	17	81	40	2	0	56	1.14
26916747--26916790	22	2.0	22	90	0	70	27	11	25	36	1.90
26918860--26918959	50	2.0	50	100	0	200	32	14	14	40	1.85
26920264--26920302	12	3.2	12	81	3	51	61	2	5	30	1.31
26929606--26929654	20	2.4	21	83	6	57	55	2	4	38	1.31
26931961--26932020	27	2.2	29	85	11	90	28	5	16	50	1.66
26931975--26932028	14	4.0	13	73	17	56	27	7	18	46	1.76
26935592--26936359	384	2.0	384	99	0	1518	38	9	10	41	1.73
26936320--26936367	21	2.2	22	85	10	64	52	0	12	35	1.40
26937731--26937772	20	2.1	20	86	8	59	38	2	9	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26937854--26938416	289	2.0	286	85	3	772	31	19	13	35	1.90
26939435--26939482	14	3.4	14	80	11	53	20	0	6	72	1.05
26943286--26943325	19	2.1	19	85	4	53	55	2	2	40	1.27
26948669--26948724	27	2.1	27	83	6	69	60	1	1	35	1.17
26950311--26950361	17	2.7	20	77	22	56	27	15	15	41	1.88
26953899--26953942	19	2.2	20	84	4	54	27	25	0	47	1.52
26965893--26965930	20	1.9	20	88	0	58	23	7	18	50	1.73
26970001--26970033	5	6.8	5	93	6	59	39	0	0	60	0.97
26971273--26971580	77	4.0	77	86	2	381	25	15	17	41	1.89
26971387--26972252	194	4.5	194	72	10	521	25	16	15	41	1.88
26971561--26972197	77	8.3	77	80	2	566	25	16	15	41	1.88
26971298--26972059	40	19.8	40	68	12	272	25	16	17	41	1.89
26971569--26972168	305	2.0	306	81	4	719	25	15	16	42	1.87
26971561--26972115	228	2.4	230	82	3	663	25	16	16	42	1.88
26972069--26972193	37	3.3	36	73	8	97	30	16	11	41	1.83
26972129--26972225	37	2.6	36	79	9	106	27	17	10	44	1.81
26978573--26978780	96	2.2	96	80	3	231	37	22	19	20	1.94
26978564--26978812	32	7.8	33	76	6	192	36	22	20	20	1.95
26978813--26978866	26	2.1	26	92	0	90	35	18	22	24	1.96
26986352--26986384	16	2.1	16	100	0	66	12	0	27	60	1.32
26987984--26988033	24	2.0	25	88	3	75	62	8	6	24	1.46
27001544--27001583	20	2.0	21	85	14	57	30	5	15	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27008002--27008032	14	2.2	14	94	0	53	29	12	25	32	1.93
27015517--27015583	6	12.0	6	77	17	56	62	2	2	31	1.25
27024586--27024764	45	4.0	45	82	5	202	28	20	12	39	1.88
27024618--27024696	24	3.4	23	68	10	63	30	22	8	37	1.85
27024642--27024713	21	3.3	21	68	11	63	27	19	12	40	1.88
27024593--27024764	90	1.9	90	84	2	229	28	20	12	38	1.89
27030728--27030820	27	3.4	27	80	7	116	37	0	21	40	1.54
27030808--27030911	36	2.9	37	72	4	113	25	0	27	47	1.53
27031566--27031590	9	2.8	9	100	0	50	0	8	0	92	0.40
27034153--27034181	14	2.0	15	93	6	51	51	20	0	27	1.47
27034319--27034493	87	2.0	87	89	1	271	33	16	17	32	1.92
27034405--27034711	126	2.4	125	87	1	461	36	15	18	29	1.91
27038270--27038348	39	2.0	39	97	0	149	31	2	20	45	1.64
27038824--27038896	33	2.2	32	76	7	74	32	17	24	24	1.97
27049558--27049682	33	3.8	32	72	8	108	30	16	27	25	1.97
27049558--27049683	66	1.9	66	80	6	148	30	17	26	25	1.97
27052471--27052496	2	13.0	2	100	0	52	50	0	0	50	1.00
27056269--27056496	89	2.6	89	89	2	325	38	24	8	29	1.84
27056513--27056614	18	5.8	16	71	19	53	61	0	0	37	1.03
27056520--27056620	19	5.7	17	72	15	64	60	0	0	38	1.04
27056567--27056641	19	4.1	19	79	5	66	62	0	2	34	1.09
27056556--27056614	27	2.2	26	84	3	82	62	0	1	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27056513--27056643	8	14.8	8	68	23	59	60	0	1	38	1.06
27056513--27056643	17	7.4	16	73	20	59	60	0	1	38	1.06
27056533--27056650	10	12.6	10	73	16	60	57	0	1	40	1.09
27056828--27056863	19	1.9	19	94	5	65	47	2	0	50	1.15
27056896--27057068	89	2.0	87	82	10	208	30	9	21	38	1.86
27057082--27057111	3	10.0	3	100	0	60	33	0	0	66	0.92
27058710--27058743	15	2.3	15	89	0	50	52	0	14	32	1.42
27060066--27060121	22	2.5	22	82	5	69	21	35	1	41	1.64
27061420--27061467	22	2.2	22	85	7	62	29	4	6	60	1.40
27061420--27061468	23	2.2	22	85	10	64	28	4	6	61	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226