genome.fa.s24.2.7.7.80.10.50.1000.217.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  217  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64802301--64802395	23	4.1	23	94	0	154	20	21	27	31	1.97
64808998--64809029	15	2.1	16	94	5	57	68	3	0	28	1.04
64828387--64828425	19	2.1	18	95	4	69	43	15	2	38	1.60
64830253--64830320	6	11.3	6	96	0	127	0	17	0	82	0.67
64830316--64830732	111	3.7	111	94	0	708	33	23	12	30	1.92
64835374--64835402	6	4.8	6	100	0	58	48	17	17	17	1.82
64835382--64835486	45	2.3	45	90	3	167	40	19	19	20	1.91
64836442--64836473	16	1.9	17	93	6	57	0	25	0	75	0.81
64838777--64838810	17	2.0	17	100	0	68	41	17	11	29	1.85
64858573--64858606	18	1.9	18	88	5	52	52	0	8	38	1.33
64858570--64858616	17	2.7	18	77	9	53	57	0	6	36	1.24
64864179--64864212	14	2.6	13	90	9	52	44	0	50	5	1.26
64880974--64881053	36	2.2	36	80	8	92	52	2	8	36	1.46
64881100--64881148	24	2.1	23	82	14	57	51	2	8	38	1.43
64881182--64881240	3	19.7	3	82	6	75	62	1	5	30	1.26
64882905--64882948	21	2.1	21	87	8	63	4	34	25	36	1.76
64883075--64883355	87	3.3	84	72	12	243	26	21	20	31	1.98
64882929--64883356	44	9.9	44	72	12	250	25	23	20	30	1.98
64882974--64883356	174	2.2	170	88	4	565	26	23	19	30	1.98
64882979--64883270	41	6.8	41	73	11	158	27	23	19	29	1.98
64883316--64883526	85	2.5	85	83	8	232	23	22	22	31	1.99
64883370--64883526	86	1.8	85	89	4	244	24	22	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64891709--64891917	86	2.4	85	82	8	219	23	22	22	31	1.98
64893164--64893190	1	27.0	1	100	0	54	0	0	0	100	0.00
64904495--64904574	36	2.2	36	80	8	92	52	2	8	36	1.46
64904621--64904669	24	2.1	23	82	14	57	51	2	8	38	1.43
64904703--64904752	3	16.7	3	79	8	57	62	2	6	30	1.31
64913108--64913164	28	2.0	28	82	0	69	22	7	14	56	1.62
64914477--64914519	16	2.5	17	88	7	61	51	0	4	44	1.22
64914508--64914541	18	1.9	18	88	5	52	41	0	0	58	0.98
64914913--64914957	19	2.3	19	92	3	72	51	11	6	31	1.63
64915426--64915459	14	2.4	14	95	0	59	35	0	0	64	0.94
64922199--64922229	2	15.5	2	93	0	53	45	0	3	51	1.17
64922150--64922214	22	2.9	22	76	4	67	50	1	10	36	1.47
64922456--64922480	13	1.9	13	100	0	50	56	8	0	36	1.29
64924942--64924966	6	4.2	6	100	0	50	32	0	0	68	0.90
64931566--64931639	37	2.0	36	82	7	87	66	2	0	31	1.06
64934347--64934451	54	1.9	56	83	11	137	40	0	4	54	1.28
64934389--64934453	21	3.1	21	86	8	80	41	0	4	53	1.21
64938003--64938199	98	2.0	98	97	0	376	37	24	9	27	1.87
64938868--64938920	27	1.9	28	88	3	81	60	3	5	30	1.37
64940260--64940299	12	3.5	11	86	10	53	22	0	5	72	1.04
64947597--64947635	21	1.9	20	84	5	51	30	2	25	41	1.69
64949139--64949214	39	1.9	39	89	0	116	26	11	30	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64949920--64950183	132	2.0	132	97	0	501	39	17	13	29	1.88
64955635--64956147	115	4.5	114	92	4	826	41	15	17	24	1.89
64955635--64956158	226	2.3	226	91	3	860	40	15	17	26	1.89
64956143--64956845	115	6.2	114	86	6	897	27	15	13	42	1.85
64956142--64956781	350	1.8	348	89	2	998	28	15	13	42	1.84
64965792--64965820	15	1.9	15	100	0	58	65	0	13	20	1.26
64969278--64969304	7	3.9	7	100	0	54	14	29	0	55	1.40
64969409--64969451	6	6.8	6	81	7	50	44	16	20	18	1.87
64969435--64969535	45	2.2	45	83	0	139	42	17	17	21	1.89
64969481--64969562	39	2.1	39	84	6	105	39	19	21	19	1.93
64976808--64976836	14	2.0	15	93	6	51	41	0	0	58	0.98
64978293--64978332	20	2.0	20	100	0	80	30	0	10	60	1.30
64982264--64982305	21	1.9	23	85	9	61	30	2	0	66	1.04
64982263--64982315	21	2.5	22	74	22	58	33	3	0	62	1.13
64983716--64983781	30	2.2	29	78	7	69	15	15	0	69	1.19
64984165--64984205	19	2.2	19	90	0	64	43	2	12	41	1.55
64985142--64985190	22	2.1	22	85	11	62	44	0	2	53	1.12
64985137--64985191	23	2.4	24	80	16	64	45	0	1	52	1.11
64986225--64986282	29	2.0	30	82	3	73	32	12	10	44	1.75
64986261--64986318	30	1.9	30	83	13	75	29	15	8	46	1.75
65000026--65000092	22	3.0	22	80	8	82	46	17	19	16	1.85
65008144--65008185	22	2.0	22	85	4	59	42	0	7	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65013507--65014668	296	3.9	293	81	6	1127	35	14	10	39	1.81
65013507--65014668	593	2.0	592	80	5	1315	35	14	10	39	1.81
65032568--65032597	7	4.3	7	91	0	51	56	13	13	16	1.67
65032865--65032897	12	2.5	13	90	9	50	75	0	3	21	0.93
65044066--65044096	12	2.6	12	94	0	53	16	22	35	25	1.94
65044109--65044177	29	2.4	29	97	0	129	13	28	39	18	1.88
65048919--65048970	16	3.2	16	83	5	68	9	25	0	65	1.23
65052227--65052284	29	2.0	30	89	3	91	27	22	12	37	1.89
65057105--65057130	2	13.0	2	100	0	52	50	0	0	50	1.00
65068392--65068704	155	2.0	155	89	1	484	30	21	29	19	1.97
65072922--65072958	11	3.3	11	85	7	56	37	13	24	24	1.91
65076327--65076374	25	2.0	24	91	4	78	35	0	14	50	1.44
65077827--65078195	153	2.4	153	91	2	582	25	20	15	38	1.92
65082125--65082323	41	4.9	41	88	3	287	16	17	29	37	1.91
65082129--65082323	81	2.4	82	87	4	279	16	16	28	38	1.91
65082129--65082400	122	2.2	122	80	6	284	17	19	26	36	1.94
65082761--65082841	23	3.5	23	71	22	71	23	2	24	49	1.62
65082852--65082892	22	1.9	21	85	14	57	19	0	24	56	1.42
65085360--65085479	47	2.6	47	98	0	231	28	5	19	46	1.72
65085373--65085445	22	3.2	22	63	30	53	27	5	19	47	1.71
65085589--65085625	12	3.1	12	100	0	74	18	16	16	48	1.81
65086790--65086847	29	2.0	29	100	0	116	31	24	3	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65086977--65087033	9	6.7	9	76	9	57	42	12	1	43	1.52
65087000--65087031	16	2.0	16	93	0	55	46	12	0	40	1.42
65087126--65087195	12	6.0	12	78	6	72	47	18	2	31	1.63
65087249--65087712	9	51.0	9	77	5	459	46	18	3	31	1.66
65087249--65087712	100	4.6	99	86	3	599	46	18	3	31	1.66
65091370--65091501	66	2.0	66	91	2	212	41	18	25	14	1.88
65091859--65092046	43	4.4	43	84	7	215	27	18	25	28	1.98
65091855--65092046	83	2.3	85	87	6	266	27	18	26	27	1.98
65102495--65102535	21	2.0	21	81	18	50	31	19	26	21	1.97
65105667--65105847	43	4.2	43	87	2	263	20	24	19	34	1.96
65105667--65105847	88	2.1	86	88	2	263	20	24	19	34	1.96
65106142--65106200	21	2.8	21	89	0	91	0	50	23	25	1.49
65106590--65106618	13	2.1	14	93	6	51	55	10	0	34	1.34
65106615--65106653	17	2.2	19	86	9	55	58	0	2	38	1.12
65109420--65109492	9	8.6	9	83	11	100	31	0	20	47	1.50
65109408--65109492	16	5.0	17	80	15	79	32	0	18	48	1.49
65109413--65109492	25	3.2	25	94	0	142	31	0	20	48	1.49
65110108--65110197	30	2.8	31	72	14	85	56	13	16	13	1.67
65119211--65119579	153	2.4	153	90	2	564	26	20	15	38	1.92
65119211--65119628	153	2.7	152	85	3	545	25	20	15	38	1.92
65122846--65123213	153	2.4	152	88	4	526	26	21	15	37	1.92
65143040--65143079	3	13.3	3	83	0	53	32	5	0	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65147023--65147070	25	1.9	25	91	8	80	33	0	14	52	1.42
65148510--65148881	153	2.4	155	90	3	572	25	20	15	38	1.92
65154893--65154928	12	3.0	12	95	0	63	30	8	0	61	1.26
65156387--65156441	14	4.0	14	76	9	51	14	5	1	78	1.02
65166873--65166898	3	8.7	3	100	0	52	34	0	0	65	0.93
65167333--65167361	6	4.8	6	100	0	58	34	13	0	51	1.42
65167413--65167450	19	2.0	20	89	5	60	42	7	0	50	1.31
65176037--65176083	18	2.6	17	83	12	51	21	4	0	74	0.99
65176037--65176084	23	2.1	23	81	14	55	20	4	0	75	0.97
65176053--65176085	6	5.7	6	89	3	50	15	3	0	81	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226