genome.fa.s24.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  221  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66125954--66126032	29	2.8	29	75	17	94	77	2	12	7	1.08
66129936--66129980	21	2.1	21	100	0	90	28	17	4	48	1.66
66130147--66130198	15	3.6	15	80	12	56	46	0	0	53	1.00
66130113--66130396	38	7.3	38	68	18	120	43	1	4	49	1.34
66130232--66130396	37	4.3	37	66	16	102	43	1	4	49	1.34
66130267--66130323	12	4.5	12	76	18	53	42	0	1	56	1.10
66130113--66130430	116	2.7	120	94	3	572	43	1	4	50	1.32
66130374--66130433	16	3.8	16	76	12	54	45	0	1	53	1.10
66130383--66130424	15	2.9	15	82	10	52	47	0	0	52	1.00
66130634--66130669	16	2.2	16	95	0	63	36	36	0	27	1.57
66131671--66131736	31	2.1	31	83	8	80	53	4	1	40	1.31
66131689--66131742	16	3.5	16	78	14	60	55	0	1	42	1.10
66146473--66146536	30	2.2	28	76	15	67	50	0	4	45	1.22
66147275--66147315	5	7.8	5	89	10	64	0	17	2	80	0.82
66149983--66150031	25	2.0	25	95	0	89	42	10	14	32	1.79
66150602--66150643	22	1.9	22	85	0	57	45	19	4	30	1.71
66151947--66152045	50	1.9	52	85	4	139	41	26	12	20	1.87
66157796--66157832	16	2.2	18	85	9	51	24	16	5	54	1.63
66158581--66158627	21	2.1	23	84	7	62	27	4	2	65	1.22
66162162--66162194	17	1.9	18	88	11	52	36	0	6	57	1.23
66165855--66165910	28	2.0	28	85	0	76	33	1	14	50	1.53
66175288--66175315	6	4.7	6	100	0	56	17	32	50	0	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66176050--66176083	13	2.8	12	87	12	52	47	0	0	52	1.00
66176050--66176101	24	2.2	24	80	19	56	48	0	0	51	1.00
66178686--66179191	234	2.2	229	90	2	789	31	10	16	41	1.83
66178989--66179404	209	2.0	211	79	3	455	31	9	15	43	1.78
66179198--66179736	233	2.3	231	83	7	644	29	8	16	46	1.75
66189935--66190010	35	2.1	35	85	2	98	44	13	25	17	1.84
66197191--66197272	41	2.0	41	92	0	137	28	10	14	46	1.78
66199630--66199666	14	2.5	15	91	8	58	64	0	0	35	0.94
66201641--66201675	16	2.2	16	100	0	70	22	5	31	40	1.78
66202200--66203218	218	4.7	217	77	10	863	29	15	19	35	1.92
66218726--66218846	57	2.1	57	83	6	156	42	19	17	21	1.90
66221859--66221977	59	2.0	59	100	0	238	56	10	8	25	1.60
66228900--66228927	13	2.2	13	100	0	56	42	21	0	35	1.53
66229364--66229389	2	13.0	2	100	0	52	50	0	0	50	1.00
66234327--66234367	21	2.0	21	81	18	50	26	4	0	68	1.10
66235297--66235365	29	2.3	30	80	5	77	37	2	13	46	1.58
66235719--66235778	8	7.8	8	78	12	63	26	0	0	73	0.84
66235732--66235792	25	2.3	26	86	5	88	32	1	0	65	1.02
66235718--66235778	7	8.0	7	75	13	50	26	0	0	73	0.83
66235732--66235801	26	2.7	25	82	4	86	31	1	1	65	1.10
66235808--66235839	10	3.1	10	95	4	55	0	28	56	15	1.40
66236703--66236745	19	2.3	19	87	0	59	37	0	9	53	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66242336--66242386	24	2.1	24	82	13	61	11	9	3	74	1.19
66246105--66246129	3	8.3	3	100	0	50	32	36	0	32	1.58
66247034--66247076	21	2.0	21	82	8	52	23	13	0	62	1.31
66254705--66254747	21	2.0	21	82	8	52	23	13	0	62	1.31
66270062--66270104	21	2.0	21	82	8	52	23	13	0	62	1.31
66277725--66277767	21	2.0	21	82	8	52	23	13	0	62	1.31
66285199--66285296	54	1.9	50	84	12	128	20	15	14	50	1.78
66289304--66289335	15	2.3	15	89	10	50	40	18	0	40	1.51
66289853--66290035	39	4.4	39	86	12	222	40	20	18	20	1.91
66289836--66289957	51	2.4	51	90	0	190	41	18	18	21	1.90
66293365--66293436	23	3.1	23	66	15	67	29	19	20	30	1.97
66296843--66296888	3	15.3	3	100	0	92	32	34	0	32	1.58
66304149--66304204	25	2.2	25	84	6	69	3	30	0	66	1.09
66306310--66306349	18	2.1	20	86	9	57	37	0	0	62	0.95
66307521--66307573	27	2.0	27	96	0	97	35	28	5	30	1.80
66308669--66308761	27	3.7	27	76	16	99	40	25	5	27	1.77
66308683--66308723	21	2.0	21	95	0	73	46	26	0	26	1.53
66313126--66313450	132	2.5	132	92	1	526	26	24	17	32	1.97
66313554--66314790	50	24.8	50	75	6	741	26	19	20	32	1.97
66317249--66317290	15	2.8	16	89	7	61	0	14	0	85	0.59
66317249--66317341	8	11.6	8	76	15	68	6	8	2	82	0.90
66317249--66317298	22	2.2	23	92	3	84	2	14	0	84	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66317248--66317288	6	7.0	6	86	8	50	0	17	0	82	0.66
66317309--66317343	18	1.9	18	100	0	70	8	0	0	91	0.42
66318061--66318097	17	2.1	18	90	5	58	45	0	24	29	1.53
66322354--66322392	14	2.8	14	96	0	69	15	46	28	10	1.78
66322609--66322646	20	1.9	20	100	0	76	76	5	13	5	1.13
66325822--66325957	51	2.7	51	83	2	166	25	14	27	32	1.95
66325977--66326148	48	3.6	48	87	1	229	25	22	29	22	1.99
66330684--66330711	14	2.0	14	100	0	56	50	14	21	14	1.78
66345170--66345195	11	2.4	11	100	0	52	7	30	0	61	1.24
66345258--66345317	30	2.0	30	96	0	111	28	3	11	56	1.51
66357043--66357089	21	2.2	22	92	3	78	21	19	38	21	1.94
66358028--66358064	7	5.4	7	90	6	58	0	21	0	78	0.75
66360614--66360654	21	2.0	21	85	9	57	24	7	0	68	1.15
66372443--66372483	21	2.0	21	90	0	64	29	21	29	19	1.98
66377953--66377982	9	3.3	9	100	0	60	50	10	0	40	1.36
66379164--66379197	17	1.9	18	88	5	52	58	0	38	2	1.13
66379107--66379290	103	1.8	101	93	2	323	57	2	28	11	1.45
66379416--66379471	25	2.2	25	84	6	69	3	30	0	66	1.09
66381292--66381335	21	2.1	21	91	0	70	15	29	34	20	1.94
66384640--66384713	21	3.0	26	75	22	86	37	27	4	31	1.75
66385375--66385502	63	2.0	63	98	0	247	43	19	6	30	1.75
66393870--66393921	24	2.2	24	89	0	77	36	3	9	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66398317--66398366	24	2.1	24	88	0	73	36	4	10	50	1.55
66400249--66400280	14	2.3	14	94	0	55	37	15	21	25	1.93
66400828--66400914	30	2.9	29	73	23	81	55	1	0	43	1.07
66404091--66404145	26	2.1	26	93	0	92	47	9	9	34	1.67
66407505--66407547	21	2.0	21	90	0	68	39	32	0	27	1.57
66408337--66408392	27	2.2	25	84	12	71	35	25	5	33	1.79
66409052--66409179	63	2.0	63	96	0	238	42	19	7	30	1.78
66410225--66410331	49	2.2	49	84	0	133	30	11	14	43	1.80
66412232--66412302	21	2.9	26	76	22	89	39	26	2	30	1.71
66412250--66412308	21	2.7	21	89	5	82	38	28	1	30	1.67
66414741--66414772	3	11.0	3	93	6	57	68	0	31	0	0.90
66415006--66415053	17	2.7	18	80	6	53	6	25	0	68	1.12
66417049--66417100	24	2.2	24	89	0	77	55	9	1	32	1.43
66419016--66419067	24	2.2	24	89	0	77	55	9	1	32	1.43
66422141--66422196	25	2.2	25	84	6	69	3	30	0	66	1.09
66424302--66424341	18	2.1	20	86	9	57	37	0	0	62	0.95
66425513--66425565	27	2.0	27	96	0	97	35	28	5	30	1.80
66426403--66426473	21	2.9	26	76	22	89	39	26	2	30	1.71
66426421--66426479	21	2.7	21	89	5	82	38	28	1	30	1.67
66428006--66428139	58	2.3	57	84	5	171	32	19	12	35	1.89
66428006--66428143	30	4.8	28	75	10	109	33	18	13	34	1.90
66430260--66430308	10	4.8	10	87	9	64	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66432743--66432795	21	2.5	21	88	11	90	32	22	26	18	1.97
66432880--66432913	18	1.9	18	88	5	52	26	26	0	47	1.53
66432889--66432935	24	2.0	22	84	8	58	31	23	0	44	1.54
66432975--66433008	16	2.1	17	88	5	52	32	23	0	44	1.54
66433669--66433702	17	1.9	18	94	5	61	35	20	0	44	1.52
66434124--66434152	14	2.0	15	93	6	51	3	20	6	68	1.27
66434189--66434213	9	2.8	9	100	0	50	56	0	8	36	1.29
66438026--66438051	3	8.7	3	100	0	52	34	34	0	30	1.58
66439084--66439123	21	1.9	21	89	0	62	37	30	0	32	1.58
66440425--66440490	32	2.1	31	83	8	80	53	4	1	40	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226