genome.fa.s24.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  48  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16156853--16156906	7	7.4	7	79	8	63	16	1	35	46	1.58
16156847--16156906	15	4.1	14	81	8	66	20	1	33	45	1.61
16157178--16157259	31	2.7	30	79	5	92	19	1	41	37	1.59
16160308--16160370	22	2.7	23	79	18	69	46	0	3	50	1.17
16160302--16160382	12	7.5	11	71	25	50	45	0	2	51	1.14
16160505--16160932	9	49.8	9	66	23	203	44	21	1	32	1.60
16160502--16160585	43	2.0	43	87	0	123	48	23	0	27	1.51
16160590--16160796	25	8.2	24	79	17	201	43	20	1	34	1.61
16160590--16160865	103	2.7	104	77	17	276	43	21	1	34	1.59
16160712--16160759	19	2.5	19	82	0	60	43	20	2	33	1.64
16160787--16160814	13	2.2	13	100	0	56	39	25	0	35	1.56
16160654--16160895	25	9.5	26	77	18	171	44	20	1	33	1.59
16160786--16160910	59	2.2	56	84	12	157	47	20	0	31	1.56
16160800--16160932	43	3.1	43	82	10	141	46	21	1	30	1.60
16166324--16166494	66	2.6	65	85	4	209	39	19	28	13	1.89
16166466--16166509	21	2.1	21	86	0	61	38	18	40	2	1.63
16166473--16166516	21	2.1	21	82	0	52	36	20	40	2	1.65
16166485--16166577	21	4.4	21	75	10	91	35	15	43	6	1.72
16167001--16167092	43	2.1	43	94	4	159	32	29	18	19	1.96
16167019--16167153	43	3.2	43	84	3	148	26	29	21	22	1.99
16168668--16168700	17	1.9	18	88	11	52	51	9	9	30	1.64
16168722--16168802	25	3.1	26	75	13	78	50	9	8	30	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16169943--16169976	17	1.9	18	94	5	61	35	11	5	47	1.65
16171840--16171905	25	2.6	25	78	0	69	19	25	19	34	1.96
16171857--16171973	25	4.7	25	74	4	101	20	25	19	34	1.96
16173821--16173868	24	2.0	25	83	4	62	22	25	18	33	1.97
16173979--16174043	25	2.6	25	82	4	78	21	30	20	27	1.98
16174024--16174132	49	2.2	50	80	9	125	21	30	18	30	1.97
16174054--16174131	25	3.2	24	85	3	95	21	32	15	30	1.94
16174071--16174131	25	2.4	25	91	0	104	22	32	16	27	1.96
16177603--16177643	21	2.0	21	100	0	82	51	0	9	39	1.35
16177839--16178092	129	2.0	130	92	2	422	42	7	7	42	1.60
16195547--16195608	25	2.5	25	82	10	74	32	0	8	59	1.26
16197283--16197334	22	2.4	22	84	9	63	46	1	1	50	1.23
16197293--16197337	22	2.1	22	91	4	74	40	2	0	57	1.11
16200661--16200707	20	2.3	20	85	7	60	31	2	2	63	1.18
16200676--16200714	20	2.0	20	94	0	69	30	0	2	66	1.05
16200834--16200872	15	2.6	16	88	8	55	25	0	2	71	0.98
16202403--16202448	12	3.8	12	79	0	56	67	23	4	4	1.27
16202379--16202448	36	1.9	36	82	0	86	65	21	7	5	1.38
16202729--16202771	14	3.0	14	82	3	50	51	2	2	44	1.27
16204963--16205000	20	1.9	20	100	0	76	57	10	13	18	1.63
16206016--16206080	26	2.4	26	80	14	69	13	9	12	64	1.49
16215939--16216264	166	2.0	166	95	0	580	32	23	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16220326--16220435	52	2.1	50	85	8	141	30	21	28	19	1.97
16220326--16220415	25	3.5	24	77	10	81	31	23	26	18	1.98
16220354--16220435	25	3.2	26	82	6	105	28	21	30	19	1.98
16220367--16220447	25	3.2	25	78	0	99	28	22	30	18	1.97
16221518--16221739	27	8.3	26	77	5	194	45	21	15	16	1.84
16221519--16221744	81	2.8	80	79	4	258	46	21	15	16	1.84
16221518--16221739	54	4.1	53	78	4	230	45	21	15	16	1.84
16225166--16225494	27	12.3	27	81	2	385	46	20	14	18	1.84
16233679--16233720	21	2.0	22	90	4	68	52	11	0	35	1.38
16239071--16239146	23	3.3	23	92	0	134	22	21	26	30	1.99
16248728--16248769	18	2.5	17	80	7	50	26	14	14	45	1.83
16265763--16265841	33	2.3	33	77	18	81	41	13	7	36	1.74
16267637--16267697	22	2.7	23	82	9	65	70	6	0	22	1.10
16267637--16267697	11	5.5	11	78	18	56	70	6	0	22	1.10
16267630--16267709	33	2.4	33	75	19	85	67	10	0	22	1.20
16270970--16271165	97	2.0	97	98	0	383	34	14	23	27	1.93
16276112--16276241	43	3.0	43	97	2	253	43	13	9	33	1.76
16276984--16277055	37	1.9	38	88	2	110	15	29	0	55	1.40
16285751--16285798	10	4.9	10	76	2	53	66	0	8	25	1.19
16292648--16292695	10	4.9	10	76	2	53	66	0	8	25	1.19
16298800--16298828	13	2.1	14	93	6	51	34	0	0	65	0.93
16301763--16301818	24	2.3	24	78	0	58	41	17	12	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16302361--16302386	9	2.9	9	100	0	52	23	46	23	7	1.78
16307134--16307177	21	2.1	21	100	0	88	54	22	4	18	1.61
16308217--16308250	9	3.8	9	100	0	68	32	11	11	44	1.77
16309109--16309197	46	1.9	46	97	0	169	37	12	26	23	1.90
16312887--16312938	24	2.2	25	80	16	67	28	9	17	44	1.80
16313335--16313375	22	1.9	22	95	5	75	43	9	0	46	1.36
16313516--16313685	69	2.5	69	80	9	188	37	15	4	42	1.68
16315482--16315552	35	2.0	35	91	0	115	39	11	35	14	1.81
16316741--16316797	29	2.0	29	85	0	78	38	14	26	21	1.91
16318745--16318779	18	1.9	18	94	0	61	28	28	2	40	1.71
16319203--16319287	29	2.9	29	67	16	68	42	1	1	55	1.15
16322150--16322672	126	4.2	126	91	0	832	28	17	17	37	1.92
16322150--16322672	251	2.1	252	91	0	850	28	17	17	37	1.92
16322729--16322831	34	3.1	33	79	5	125	39	18	0	41	1.50
16325337--16325374	12	3.0	13	84	7	51	50	0	0	50	1.00
16335461--16335493	15	2.3	15	89	5	50	54	6	6	33	1.50
16336023--16336387	195	1.9	195	93	2	635	35	15	6	43	1.73
16340036--16340529	91	5.4	91	88	2	656	23	20	14	41	1.89
16340038--16340569	46	11.7	45	86	2	647	23	20	14	41	1.89
16340038--16340569	137	3.9	136	85	2	683	23	20	14	41	1.89
16345570--16345704	68	2.0	69	86	1	191	50	3	5	40	1.42
16349345--16349411	28	2.3	30	80	12	68	14	23	19	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16354073--16354137	28	2.4	28	94	2	114	41	10	0	47	1.38
16365031--16365098	22	3.3	21	84	8	86	39	19	11	29	1.87
16369964--16370073	40	2.7	41	82	1	123	23	30	14	31	1.94
16369994--16370083	40	2.2	40	82	2	117	22	33	16	27	1.95
16378592--16378633	6	7.0	6	100	0	84	50	0	16	33	1.46
16380182--16380224	17	2.4	18	88	7	61	62	0	0	37	0.95
16383058--16383095	19	2.1	18	90	5	58	57	7	0	34	1.28
16383546--16383580	18	1.9	18	100	0	70	0	11	8	80	0.92
16389100--16389404	146	2.1	142	80	6	326	43	10	8	37	1.70
16389392--16389425	14	2.3	15	90	5	52	47	0	2	50	1.16
16389100--16389424	147	2.2	142	78	7	341	44	9	8	38	1.67
16389652--16389695	19	2.3	19	84	7	54	43	0	0	56	0.99
16390882--16390912	5	6.2	5	92	0	53	77	0	3	19	0.90
16392312--16392381	31	2.3	31	80	5	79	40	11	12	35	1.80
16404943--16404985	3	14.0	3	95	4	77	34	0	0	65	0.93
16405797--16406214	109	3.8	109	80	4	423	30	16	17	34	1.93
16405788--16406214	224	1.9	222	86	4	616	30	16	18	34	1.93
16413370--16413587	109	2.0	109	99	0	427	37	11	31	18	1.88
16418285--16418334	25	2.0	25	84	0	64	36	20	18	26	1.95
16418159--16418779	125	5.0	125	94	0	1091	33	19	20	26	1.96
16420426--16420843	109	3.8	109	82	3	466	30	17	18	34	1.94
16420417--16420843	224	1.9	222	87	3	632	30	16	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16421653--16421784	55	2.4	55	85	1	183	29	19	25	25	1.99
16421647--16421784	56	2.5	56	82	5	190	28	19	26	25	1.99
16422332--16422377	20	2.2	21	92	3	76	39	4	4	52	1.41
16422244--16422489	109	2.2	110	92	1	413	31	5	11	51	1.61
16422442--16422501	21	2.8	21	89	2	84	30	6	5	58	1.45
16422542--16422575	18	1.9	17	88	5	50	26	0	11	61	1.30
16423263--16423327	30	2.3	27	84	7	76	52	0	3	44	1.16
16424806--16424851	23	2.0	23	100	0	92	17	21	21	39	1.93
16424800--16424857	23	2.7	21	87	12	91	18	22	24	34	1.96
16426229--16426283	8	6.8	8	76	12	58	36	0	1	61	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226