genome.fa.s24.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  168  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51714800--51714836	18	2.1	18	90	10	58	54	10	27	8	1.63
51718700--51719118	76	5.5	75	80	2	401	34	21	19	25	1.96
51718812--51718951	36	3.8	36	69	11	113	32	22	21	23	1.98
51718694--51719119	151	2.8	152	83	1	498	34	21	18	25	1.96
51722356--51722417	28	2.2	28	94	0	106	19	11	45	24	1.83
51733458--51733500	17	2.4	18	80	11	52	13	20	44	20	1.86
51733850--51734182	27	12.4	27	73	10	216	39	19	19	20	1.93
51733899--51734128	54	4.2	54	81	3	239	38	19	21	20	1.94
51733850--51734128	81	3.5	81	83	6	300	39	20	20	20	1.93
51734211--51734296	24	3.6	23	81	12	84	23	9	19	47	1.78
51734228--51734309	24	3.4	24	87	0	110	23	8	20	47	1.77
51734450--51734542	32	2.9	32	86	0	132	21	20	20	37	1.94
51734548--51734621	22	3.3	21	73	5	58	16	18	20	44	1.87
51737970--51738012	19	2.4	17	84	7	59	76	0	0	23	0.78
51737965--51738012	17	2.8	17	82	14	55	70	0	0	29	0.87
51738301--51738367	29	2.3	30	82	12	79	58	5	4	31	1.42
51738541--51738588	21	2.2	22	85	7	71	47	8	22	20	1.77
51741187--51741236	20	2.4	21	83	6	66	54	2	8	36	1.42
51741579--51741604	3	8.7	3	100	0	52	34	0	30	34	1.58
51741603--51741651	3	16.7	3	95	4	91	65	0	0	34	0.93
51743169--51743325	85	1.8	85	81	10	196	27	22	21	28	1.99
51743346--51743587	43	5.6	43	74	7	238	23	24	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51743360--51743812	87	5.2	87	79	7	481	23	24	22	29	1.99
51743346--51743805	44	10.6	44	71	9	237	24	25	21	29	1.99
51743363--51743993	174	3.5	175	77	9	589	23	23	22	30	1.99
51743838--51744037	44	4.6	44	77	6	190	25	24	21	29	1.99
51743698--51744139	232	1.9	233	92	1	753	23	23	21	31	1.98
51744421--51744500	24	3.3	24	85	0	97	25	26	13	35	1.93
51745342--51745393	13	3.8	13	81	18	70	0	21	0	78	0.74
51745352--51745384	8	4.2	8	96	3	59	0	21	0	78	0.75
51750283--51750332	20	2.4	21	83	6	66	54	2	8	36	1.42
51750731--51750774	3	14.7	3	95	0	70	65	4	0	29	1.12
51760524--51760565	21	2.0	21	100	0	84	23	23	23	28	2.00
51761691--51761750	30	2.0	31	86	3	86	40	0	40	20	1.52
51761964--51762000	9	4.1	9	92	0	65	29	10	13	45	1.77
51762333--51762361	3	9.7	3	100	0	58	31	0	0	68	0.89
51764248--51764288	20	2.1	20	86	4	57	56	0	0	43	0.99
51782859--51782887	6	4.8	6	100	0	58	34	0	0	65	0.93
51791322--51791452	50	2.6	50	87	0	190	19	22	19	38	1.93
51791610--51791658	21	2.3	23	79	13	59	38	0	40	20	1.53
51792156--51792211	21	2.8	20	74	12	53	55	5	7	32	1.50
51794801--51794842	22	1.9	22	90	0	66	11	21	26	40	1.88
51795055--51795256	86	2.3	87	87	0	280	29	30	15	24	1.95
51795097--51795349	43	5.9	43	76	7	226	31	30	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51795097--51795349	130	2.0	129	81	5	305	31	30	15	22	1.95
51795202--51795393	86	2.2	87	82	6	237	33	29	14	22	1.94
51795695--51795828	21	6.4	21	78	6	128	5	40	17	37	1.72
51795798--51795945	66	2.2	66	86	4	201	14	28	17	39	1.89
51795804--51795968	66	2.5	66	85	3	190	13	26	18	40	1.89
51801377--51801412	16	2.2	16	95	0	63	30	0	16	52	1.44
51801613--51801665	23	2.3	23	87	3	81	41	0	9	49	1.35
51801570--51801685	58	2.0	58	90	9	184	43	0	10	45	1.44
51801605--51801682	23	3.2	24	75	19	74	41	0	10	48	1.37
51801755--51801791	13	2.8	13	95	0	65	35	0	21	43	1.53
51804351--51804478	38	3.3	38	85	5	168	23	20	27	28	1.99
51812261--51812343	42	2.0	42	90	6	136	21	19	26	32	1.97
51816705--51816735	16	1.9	16	93	0	53	48	9	0	41	1.36
51819994--51820027	16	2.1	17	88	5	52	52	5	0	41	1.25
51820514--51820571	3	19.3	3	100	0	116	32	0	0	67	0.91
51838847--51838959	23	5.0	23	75	5	97	42	21	19	16	1.89
51838890--51838967	23	3.5	21	73	19	68	42	20	19	17	1.90
51840232--51840274	21	2.2	19	83	8	50	20	30	2	46	1.63
51849697--51849754	25	2.3	25	93	0	98	29	25	24	20	1.99
51849709--51849839	25	5.3	25	76	12	110	35	20	24	19	1.96
51849676--51849843	49	3.4	50	72	16	127	35	21	23	20	1.96
51849747--51849841	24	3.9	25	80	12	108	36	17	25	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51851149--51851192	20	2.2	20	87	0	61	31	9	9	50	1.65
51855595--51855638	20	2.2	20	91	0	70	31	9	9	50	1.65
51856047--51856096	19	2.7	18	78	6	55	32	0	0	68	0.90
51856054--51856096	21	2.1	20	86	4	59	30	0	0	69	0.88
51864445--51864492	25	1.9	25	91	0	78	37	16	10	35	1.83
51865676--51865725	20	2.4	21	93	3	84	8	22	0	70	1.13
51865687--51865732	20	2.2	20	88	3	65	10	21	2	65	1.35
51867482--51867515	17	2.0	17	94	0	59	44	50	0	5	1.26
51872120--51872153	17	2.0	17	94	0	59	44	50	0	5	1.26
51872919--51872945	14	1.9	14	100	0	54	29	7	0	62	1.22
51874121--51874182	25	2.5	25	86	5	81	40	16	12	30	1.86
51879201--51879252	24	2.2	24	85	0	68	32	9	7	50	1.64
51880348--51880400	21	2.5	21	84	6	63	7	13	5	73	1.23
51885601--51885637	3	12.3	3	88	0	56	27	0	5	67	1.12
51896166--51896217	25	2.1	25	85	3	70	40	17	25	17	1.90
51896571--51896595	5	5.0	5	100	0	50	40	20	0	40	1.52
51902348--51902381	12	2.8	12	86	0	50	11	17	47	23	1.81
51902389--51902483	50	1.9	50	86	4	138	26	14	34	24	1.94
51917124--51917186	25	2.5	25	81	0	81	19	23	25	31	1.98
51918323--51918352	16	1.9	16	93	6	53	30	0	20	50	1.49
51919200--51919335	67	2.0	67	91	0	218	19	19	25	34	1.96
51924108--51924177	24	3.0	23	75	12	61	51	1	2	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51926920--51926991	19	3.6	19	76	10	56	38	1	1	58	1.15
51926920--51926991	20	3.6	20	75	9	58	38	1	1	58	1.15
51930214--51930264	20	2.5	19	84	9	57	62	3	1	31	1.24
51930853--51930900	25	2.0	24	87	4	69	60	6	4	29	1.40
51930917--51930964	22	2.2	22	85	7	62	68	0	6	25	1.12
51930937--51930974	19	2.0	20	84	5	51	65	0	5	28	1.14
51931638--51931678	18	2.2	19	91	4	66	21	7	0	70	1.11
51933501--51933562	23	2.7	23	87	2	90	17	16	24	41	1.89
51935629--51936099	242	1.9	243	92	0	782	34	19	16	30	1.93
51938186--51938284	44	2.2	44	89	5	146	31	5	29	34	1.79
51938422--51938859	120	3.7	120	94	0	759	48	4	2	43	1.37
51938556--51938590	18	2.0	17	88	5	52	54	0	0	45	0.99
51938422--51938818	59	6.6	59	64	18	144	49	4	3	43	1.37
51938825--51938871	15	3.3	15	72	22	55	46	10	0	42	1.38
51938827--51938872	12	3.3	14	74	20	51	45	10	0	43	1.39
51950460--51950827	26	14.2	25	72	13	205	59	3	7	29	1.42
51950562--51950610	22	2.3	21	86	10	64	63	4	4	28	1.31
51950536--51950637	47	2.2	47	85	3	134	65	4	2	26	1.27
51950614--51950677	32	2.1	29	83	11	76	65	6	3	25	1.31
51950767--51950835	29	2.3	30	75	9	79	66	1	4	27	1.19
51952239--51952333	50	1.9	50	84	4	129	57	8	1	32	1.35
51953747--51953823	24	3.1	24	71	12	66	48	0	11	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51953635--51953924	152	1.9	149	87	4	422	41	3	9	46	1.52
51953850--51953890	20	2.0	20	90	0	64	36	4	7	51	1.51
51964806--51965075	143	1.9	143	81	1	326	29	18	13	38	1.89
51969121--51969286	43	3.9	43	80	4	194	31	26	13	27	1.94
51974281--51974316	17	2.1	18	89	5	56	63	5	22	8	1.43
51975647--51976252	205	3.0	200	82	8	708	28	12	16	41	1.86
51976334--51976415	39	2.1	40	93	2	139	56	8	18	17	1.65
51978601--51978693	32	2.9	32	91	0	150	25	4	17	52	1.62
51980535--51980573	19	2.1	19	85	4	53	53	5	0	41	1.23
51980588--51980741	59	2.7	57	79	7	159	40	4	15	39	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226