genome.fa.s24.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  183  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55517966--55518040	23	3.3	23	70	26	77	49	22	1	26	1.58
55518442--55518625	41	4.5	41	87	6	239	37	28	18	15	1.91
55521558--55521616	25	2.4	25	88	0	82	23	16	25	33	1.96
55523002--55523081	25	3.2	25	78	5	74	20	26	22	31	1.98
55535601--55535639	18	2.2	17	86	13	53	33	0	20	46	1.51
55535865--55535986	23	5.3	23	86	0	181	23	20	25	30	1.99
55553002--55553033	15	2.1	16	94	5	57	21	37	18	21	1.94
55560670--55560812	50	2.7	50	83	6	169	30	18	26	25	1.98
55561064--55561114	12	4.2	12	78	7	59	52	5	23	17	1.66
55561074--55561112	20	2.0	20	89	0	60	51	5	25	17	1.66
55563351--55563421	36	2.0	36	83	5	90	38	15	21	25	1.92
55565956--55566167	25	8.5	25	70	8	119	37	19	26	16	1.93
55565956--55566136	49	3.6	49	76	8	152	36	19	27	16	1.93
55565989--55566074	24	3.5	24	74	3	82	34	19	29	16	1.94
55571292--55571335	17	2.4	19	82	17	58	45	0	2	52	1.13
55572515--55572564	23	2.2	23	100	0	100	24	8	14	54	1.66
55578939--55578964	3	8.7	3	100	0	52	65	0	0	34	0.93
55587198--55587230	3	11.0	3	100	0	66	33	0	0	66	0.92
55590286--55590314	13	2.2	13	100	0	58	37	6	6	48	1.57
55592191--55592257	33	2.0	33	97	0	125	29	11	19	38	1.88
55594941--55594996	27	2.1	27	100	0	112	17	16	14	51	1.76
55601876--55601901	7	3.7	7	100	0	52	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55601891--55601955	29	2.2	29	83	0	85	38	1	0	60	1.07
55601909--55601944	18	1.9	19	94	5	65	36	0	0	63	0.94
55624173--55624262	38	2.3	40	82	3	112	52	8	1	37	1.40
55624959--55624999	18	2.2	20	86	8	59	56	0	0	43	0.99
55625094--55625244	81	1.9	80	84	5	207	36	11	17	34	1.86
55628733--55628795	6	10.2	6	87	5	63	73	3	0	23	0.98
55628733--55628795	18	3.4	18	80	4	72	73	3	0	23	0.98
55630138--55630608	89	5.3	89	82	5	567	27	21	24	26	1.99
55630138--55630582	178	2.5	177	87	3	644	28	22	24	25	1.99
55630783--55631124	97	3.5	97	85	2	463	28	18	24	28	1.98
55630775--55631132	51	7.3	51	76	12	302	28	18	24	29	1.98
55633203--55633284	22	3.7	23	77	11	89	39	6	1	53	1.34
55633204--55633303	45	2.2	45	78	3	103	42	7	1	50	1.36
55634853--55634970	40	3.0	39	86	6	166	23	19	27	28	1.98
55634852--55635007	39	4.0	38	82	8	161	24	19	27	28	1.99
55634853--55635007	79	2.0	79	84	5	206	24	20	27	27	1.99
55642639--55642758	40	3.0	39	88	2	168	23	20	27	29	1.98
55642639--55642795	40	4.0	38	82	8	154	24	20	27	28	1.99
55655882--55655929	24	2.0	24	83	0	60	22	20	12	43	1.86
55656045--55656090	24	1.9	24	86	0	65	28	10	17	43	1.82
55656112--55656176	30	2.4	27	79	18	80	60	12	7	20	1.56
55660483--55660661	61	2.9	62	76	10	152	42	15	3	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55661078--55661206	61	2.1	62	82	7	156	40	3	14	41	1.64
55669099--55669189	40	2.3	40	84	3	121	46	8	20	24	1.79
55669801--55669845	23	2.0	23	86	4	65	37	6	17	37	1.76
55677797--55677821	7	3.6	7	100	0	50	16	28	0	56	1.41
55687182--55687260	38	2.1	38	85	4	106	43	30	15	11	1.82
55688928--55688954	3	9.0	3	100	0	54	0	33	0	66	0.92
55691069--55691102	17	1.9	18	88	5	52	55	0	5	38	1.24
55691086--55691119	15	2.3	15	90	10	52	67	0	5	26	1.13
55696836--55696882	19	2.4	20	75	10	53	42	0	0	57	0.98
55697644--55697709	33	2.0	33	100	0	132	12	6	39	42	1.67
55712176--55712261	42	2.0	42	84	4	111	41	17	23	17	1.89
55713525--55713709	89	2.1	89	89	2	282	28	23	24	23	2.00
55713702--55714192	44	10.9	44	70	14	245	29	19	21	28	1.98
55714087--55714192	43	2.4	44	84	1	133	28	19	24	27	1.99
55714127--55714214	44	2.0	44	81	0	104	29	20	22	27	1.99
55714550--55714606	27	2.1	27	100	0	114	17	19	31	31	1.95
55715995--55716033	3	13.0	3	83	0	51	30	5	2	61	1.31
55715995--55716042	15	3.3	15	88	2	71	29	6	2	62	1.31
55721713--55721757	22	2.0	22	83	8	56	35	2	13	48	1.54
55724438--55724519	25	3.3	24	73	24	64	25	24	17	32	1.96
55733850--55733886	15	2.5	15	100	0	74	37	5	5	51	1.48
55740763--55740820	27	2.1	26	84	9	71	31	1	3	63	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55747572--55747693	39	3.0	41	78	9	131	24	15	28	31	1.96
55747593--55747693	43	2.5	40	84	7	116	26	15	24	32	1.96
55748546--55748614	20	3.4	21	73	11	72	59	2	4	33	1.32
55748545--55748612	21	3.3	21	72	2	66	61	2	4	30	1.30
55748596--55748666	28	2.5	28	77	4	72	63	0	2	33	1.09
55748589--55748655	28	2.4	28	80	2	73	67	1	1	29	1.09
55750404--55750446	11	3.9	11	81	0	50	34	0	4	60	1.17
55756165--55756201	9	4.0	9	89	6	56	40	0	0	59	0.97
55756505--55756538	16	2.1	16	88	0	50	29	11	5	52	1.61
55768317--55768776	132	3.5	132	90	0	735	28	18	24	28	1.98
55768407--55768748	44	7.8	44	65	11	137	30	18	23	28	1.97
55773679--55773714	18	2.0	18	100	0	72	16	38	22	22	1.93
55773955--55774151	101	2.0	101	87	0	286	21	26	16	35	1.95
55778013--55778060	23	2.2	22	85	7	62	64	6	0	29	1.18
55778280--55778431	76	2.0	76	100	0	304	35	5	13	46	1.65
55780698--55780733	3	12.0	3	93	0	63	33	2	0	63	1.08
55784510--55784571	19	3.3	18	83	14	81	66	1	0	32	1.02
55784510--55784590	18	4.4	18	76	15	69	64	1	0	34	1.02
55784878--55784919	19	2.3	18	88	8	66	42	0	0	57	0.99
55785248--55785441	45	4.3	45	74	11	173	27	24	25	22	2.00
55785248--55785752	90	5.7	90	82	3	518	28	22	24	24	1.99
55785812--55785975	50	3.3	50	77	5	179	35	23	15	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55786181--55786210	15	2.0	15	93	0	51	70	13	0	16	1.18
55787390--55787423	3	11.3	3	100	0	68	35	0	0	64	0.94
55790434--55790495	19	3.3	18	83	14	81	66	1	0	32	1.02
55790434--55790514	18	4.4	18	76	15	69	64	1	0	34	1.02
55793149--55793173	3	8.3	3	100	0	50	32	32	0	36	1.58
55799223--55799252	15	2.0	15	100	0	60	33	20	0	46	1.51
55805068--55805126	31	1.9	31	89	0	91	37	3	20	38	1.69
55806241--55806279	12	3.2	12	85	0	60	61	10	2	25	1.41
55813471--55813512	18	2.3	18	80	8	50	69	9	2	19	1.28
55814689--55814821	29	4.2	34	73	13	115	20	19	29	30	1.97
55814646--55814808	63	2.6	63	80	0	191	20	21	28	29	1.98
55814628--55814827	63	3.2	62	75	5	186	20	21	28	30	1.98
55815306--55815348	20	2.1	20	82	4	50	27	23	20	27	1.99
55817488--55817527	20	2.0	20	90	0	62	50	12	10	27	1.72
55817476--55817542	34	1.9	35	90	3	109	46	13	8	31	1.74
55817533--55817558	12	2.2	12	100	0	52	46	7	15	30	1.74
55818742--55818857	42	2.8	42	77	10	130	35	19	15	29	1.93
55822323--55822375	6	8.8	6	84	15	74	84	0	15	0	0.61
55822322--55822376	25	2.2	24	90	9	85	85	0	14	0	0.60
55823028--55823068	15	2.7	15	88	7	57	34	36	9	19	1.85
55829329--55829358	12	2.4	13	94	5	53	90	6	3	0	0.56
55830476--55830536	9	6.8	9	96	0	104	22	9	29	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55830696--55830720	12	2.1	12	100	0	50	16	24	36	24	1.94
55831790--55831919	44	3.0	44	95	0	233	29	17	24	28	1.97
55832126--55832396	50	5.5	50	68	11	173	32	19	19	27	1.96
55832096--55832379	95	2.9	97	80	3	329	31	19	20	28	1.97
55832319--55832421	46	2.1	48	89	7	156	33	23	17	25	1.96
55832789--55832830	15	2.8	15	85	0	57	38	35	7	19	1.79
55833009--55833045	20	1.9	20	88	5	58	64	8	16	10	1.47
55833842--55833888	11	4.3	11	86	7	69	29	0	0	70	0.88
55834177--55834272	28	3.4	27	71	14	79	30	9	2	58	1.41
55835708--55836130	142	3.0	142	83	2	508	30	19	21	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226