genome.fa.s24.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  108  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33685133--33685660	71	7.5	71	89	1	810	42	17	14	26	1.87
33685133--33685660	141	3.7	141	96	0	966	42	17	14	26	1.87
33686702--33686782	28	3.0	24	75	20	72	30	23	12	33	1.92
33686711--33686782	28	2.6	28	90	0	108	29	26	12	31	1.93
33690813--33690941	70	1.9	67	88	4	195	39	13	14	32	1.85
33702897--33702985	33	2.7	31	86	10	108	42	13	22	21	1.87
33702991--33703061	28	2.5	28	73	13	65	35	14	26	23	1.93
33706421--33706513	39	2.4	39	85	3	116	21	8	29	40	1.83
33706582--33707199	26	23.7	26	77	5	485	22	16	21	38	1.93
33706602--33706664	31	2.0	31	84	6	83	23	23	22	30	1.99
33706633--33707193	129	4.3	129	79	4	443	22	16	21	39	1.92
33731384--33731671	27	10.6	27	86	4	312	41	18	16	23	1.90
33731853--33731923	26	2.7	26	91	0	106	14	19	23	42	1.88
33731855--33731931	26	3.0	26	86	3	102	15	19	22	42	1.88
33732016--33732100	28	3.0	28	87	0	116	21	21	23	34	1.97
33732016--33732127	28	3.8	28	80	10	91	22	22	23	32	1.98
33732678--33732704	12	2.2	12	100	0	54	14	22	0	62	1.31
33733998--33734037	10	3.8	10	81	12	53	40	2	2	55	1.27
33734571--33734610	7	5.7	7	100	0	80	15	57	0	27	1.38
33738538--33738599	29	2.1	29	81	0	70	25	17	17	38	1.92
33741607--33741644	17	2.2	18	85	4	51	44	0	2	52	1.14
33748291--33748330	16	2.5	16	91	0	62	47	2	7	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33748341--33748519	68	2.9	59	84	13	259	40	5	8	45	1.57
33748403--33748428	9	2.9	9	100	0	52	34	0	7	57	1.27
33748319--33748489	68	2.5	68	96	1	310	39	4	8	47	1.52
33748412--33748525	59	1.9	58	89	3	174	42	6	7	43	1.58
33748586--33748629	24	1.9	24	90	9	74	61	2	0	36	1.09
33750158--33750182	7	3.6	7	100	0	50	64	12	0	24	1.27
33750330--33750356	4	6.8	4	100	0	54	74	0	0	25	0.83
33753632--33753672	19	2.2	19	86	0	55	34	17	24	24	1.96
33754170--33754217	25	1.9	25	87	8	71	43	14	6	35	1.71
33758045--33758132	44	2.0	44	97	0	167	35	9	23	31	1.86
33758057--33758149	44	2.1	44	83	0	114	39	8	22	29	1.84
33761836--33761898	31	2.0	31	100	0	126	38	3	6	52	1.43
33761871--33761986	62	1.9	59	84	5	151	40	2	6	50	1.40
33763701--33763796	48	2.0	48	91	0	156	40	21	17	19	1.91
33764021--33764090	35	2.0	36	91	2	115	40	18	10	31	1.84
33767778--33767910	67	2.0	66	95	4	243	15	32	11	40	1.83
33768899--33768994	48	2.0	48	87	0	138	40	19	18	20	1.91
33769219--33769289	36	2.0	36	88	0	106	40	16	9	32	1.82
33770165--33770514	192	1.8	193	82	7	460	38	8	11	40	1.72
33772419--33772490	35	2.1	35	97	0	135	37	20	11	30	1.88
33772675--33772726	16	3.2	16	83	0	68	40	3	25	30	1.73
33772848--33772983	59	2.3	57	84	3	173	51	2	0	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33772988--33773030	21	2.0	21	86	9	59	62	2	0	34	1.08
33777361--33777403	22	2.0	20	82	8	50	27	0	2	69	1.00
33777368--33777409	21	2.0	23	86	13	63	26	2	0	71	0.98
33778764--33778903	27	5.2	27	83	6	185	16	16	22	44	1.86
33786632--33786767	28	4.9	27	81	5	130	52	9	17	19	1.71
33788410--33788445	15	2.4	15	100	0	72	27	5	33	33	1.80
33791633--33791686	23	2.3	23	96	0	99	46	18	5	29	1.72
33793374--33793405	16	1.9	17	93	6	57	37	21	0	40	1.54
33793608--33793720	41	2.7	41	82	8	122	31	30	16	21	1.95
33798734--33798776	22	1.9	23	85	4	61	9	18	23	48	1.76
33798844--33798925	43	1.9	43	87	0	119	34	29	14	21	1.93
33803416--33803473	21	2.7	22	76	13	66	27	3	41	27	1.72
33803416--33803480	22	3.0	22	77	8	71	26	3	46	24	1.67
33803488--33803699	107	2.0	106	89	2	329	36	8	12	42	1.74
33803691--33803736	23	2.0	22	83	8	56	30	6	8	54	1.56
33804488--33804544	21	2.6	22	77	2	62	38	40	0	21	1.53
33804762--33804794	14	2.3	15	94	5	59	36	33	0	30	1.58
33805179--33805402	82	2.7	83	81	5	249	29	25	21	24	1.99
33805181--33805411	41	5.6	41	82	4	214	29	25	20	24	1.99
33820325--33820363	17	2.3	17	86	8	53	46	0	2	51	1.14
33825651--33825690	16	2.5	16	100	0	80	20	27	22	30	1.98
33828427--33828501	29	2.6	29	76	0	87	17	21	36	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33839513--33839556	19	2.3	19	84	7	54	29	0	4	65	1.12
33840502--33840539	16	2.3	17	90	9	69	47	0	0	52	1.00
33843104--33843145	13	2.9	14	86	10	50	19	4	0	76	0.96
33844456--33844517	32	1.9	32	90	0	97	30	8	20	40	1.82
33845546--33845585	19	2.1	19	86	9	55	60	5	0	35	1.19
33846695--33846936	35	7.1	35	83	5	289	41	16	22	19	1.90
33846695--33846935	67	3.6	67	87	3	329	41	16	22	19	1.90
33851539--33851582	20	2.1	22	84	16	58	68	9	9	13	1.40
33854377--33854618	32	7.2	33	84	8	319	41	17	23	18	1.90
33854380--33854620	67	3.6	67	97	0	437	41	17	23	18	1.90
33858540--33858583	20	2.1	22	84	16	58	68	9	9	13	1.40
33861383--33861608	35	6.7	35	83	7	263	41	15	23	19	1.90
33861383--33861608	67	3.4	67	87	4	289	41	15	23	19	1.90
33861393--33861608	102	2.2	99	92	2	351	40	16	24	19	1.91
33862237--33862334	48	2.0	48	98	0	187	36	7	19	36	1.79
33862309--33862346	14	2.8	13	88	7	58	44	5	13	36	1.66
33864026--33864070	20	2.1	23	88	12	69	13	8	8	68	1.38
33871752--33871807	23	2.5	22	80	11	60	69	3	21	5	1.24
33874875--33874979	55	1.9	55	88	3	158	23	5	15	55	1.62
33874891--33875012	55	2.3	52	80	13	124	22	6	14	56	1.61
33884440--33884469	2	15.0	2	100	0	60	50	0	0	50	1.00
33886834--33886866	10	3.0	11	86	13	50	45	18	9	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33892514--33892547	17	1.9	18	94	5	61	11	20	47	20	1.81
33892515--33892554	18	2.3	17	86	4	53	12	20	45	22	1.84
33896418--33896461	21	2.0	22	91	4	72	50	0	43	6	1.29
33899547--33899611	22	3.2	21	66	20	57	49	20	3	27	1.64
33899516--33899654	39	3.6	39	89	0	188	43	17	6	33	1.74
33899566--33899627	17	3.4	17	70	20	52	48	20	1	29	1.59
33901229--33901320	32	2.9	32	100	0	184	51	25	5	18	1.67
33901229--33901314	18	5.2	18	68	21	80	50	25	5	18	1.69
33912779--33913067	125	2.3	125	90	2	463	33	19	19	27	1.96
33913598--33913643	24	1.9	24	81	0	56	36	19	23	19	1.95
33913743--33913799	14	4.1	14	71	6	53	15	0	38	45	1.47
33913972--33914250	123	2.2	124	93	1	470	32	19	20	27	1.97
33914845--33914901	7	8.3	7	81	11	73	15	0	38	45	1.47
33914849--33914901	13	3.9	13	80	9	70	15	0	39	45	1.46
33915077--33915361	123	2.3	125	85	4	389	34	19	19	27	1.96
33918369--33918530	61	2.8	56	75	14	159	47	6	4	40	1.52
33919694--33919726	14	2.3	15	85	15	52	60	12	0	27	1.32
33920900--33920957	21	2.6	23	76	20	61	46	0	32	20	1.51
33920902--33920959	11	5.4	10	80	10	62	48	0	31	20	1.50
33931111--33931157	25	1.9	24	82	4	58	53	2	2	42	1.25
33931312--33931346	14	2.4	15	90	4	54	28	0	0	71	0.86
33932127--33932174	19	2.5	20	83	10	64	58	0	6	35	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33933845--33933928	38	2.2	38	86	0	123	34	9	15	40	1.80
33933845--33933948	38	2.7	38	82	2	93	31	11	17	39	1.85
33934075--33934208	43	3.1	43	80	3	126	25	19	20	35	1.96
33935212--33935383	91	1.9	89	85	7	240	34	19	9	35	1.85
33935480--33935606	10	13.1	10	67	16	54	60	1	4	33	1.27
33935703--33935759	29	2.0	29	96	0	105	40	0	3	56	1.17
33935708--33935771	29	2.2	28	86	8	92	40	0	4	54	1.21
33956051--33956076	4	6.5	4	100	0	52	26	0	26	46	1.53
33957539--33957573	7	5.0	7	96	0	61	40	0	2	57	1.14
33957897--33957960	8	7.6	8	75	13	58	73	1	3	21	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226