genome.fa.s24.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  142  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44349137--44349169	16	2.1	17	88	11	52	57	0	0	42	0.98
44351999--44352031	2	16.5	2	93	0	57	0	48	0	51	1.00
44355425--44355729	108	2.9	105	87	3	407	31	19	17	31	1.95
44356257--44356296	17	2.3	18	95	4	73	37	0	20	42	1.52
44357983--44358021	21	1.9	21	89	5	62	28	0	2	69	1.02
44367000--44367046	22	2.0	24	88	8	71	63	6	8	21	1.44
44368589--44368697	49	2.2	50	82	9	134	26	22	22	28	1.99
44368721--44368965	50	4.9	50	72	8	187	25	20	22	31	1.98
44368721--44368995	100	2.8	99	83	3	320	25	20	23	30	1.99
44383198--44383302	49	2.1	50	85	1	140	25	21	23	28	1.99
44383450--44383604	50	3.1	50	71	3	159	23	21	23	30	1.99
44383330--44383604	100	2.8	99	84	6	317	23	21	24	30	1.99
44383229--44384252	272	3.8	272	95	0	1816	24	21	24	29	1.99
44383430--44383776	172	2.0	172	84	3	448	25	21	24	29	1.99
44383722--44383876	50	3.1	49	75	7	159	26	22	20	30	1.98
44383602--44383876	100	2.8	98	81	6	286	25	21	22	29	1.99
44383702--44384048	172	2.0	171	81	5	405	26	21	23	29	1.99
44383874--44384129	100	2.6	100	81	6	295	24	21	23	30	1.99
44387503--44387659	39	3.9	39	84	5	156	44	19	3	33	1.66
44387694--44387736	16	2.7	15	79	10	50	48	25	0	25	1.51
44406200--44406628	29	14.8	29	85	2	540	20	27	13	39	1.89
44412221--44412264	20	2.2	20	100	0	88	22	9	15	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44415880--44415911	16	2.0	16	93	0	55	25	15	0	59	1.36
44416041--44416133	46	2.1	43	82	9	107	32	25	18	23	1.97
44416139--44416329	51	3.8	51	78	8	219	29	26	17	26	1.97
44416132--44416355	101	2.2	102	78	5	231	29	27	16	27	1.97
44421136--44421188	23	2.3	23	96	0	97	30	24	20	24	1.99
44445253--44445305	25	2.1	25	89	0	79	22	5	20	50	1.69
44446838--44447471	152	4.2	151	90	3	970	30	9	7	51	1.63
44447483--44447781	152	2.0	151	83	7	374	52	7	8	31	1.61
44448533--44448583	22	2.3	22	100	0	102	27	33	0	39	1.57
44448628--44448673	19	2.3	20	92	3	76	41	0	0	58	0.98
44450317--44450351	18	1.9	18	88	0	52	25	34	8	31	1.86
44450611--44450665	24	2.3	24	83	0	74	45	30	21	1	1.62
44450902--44451717	28	28.4	28	84	9	979	49	23	0	26	1.50
44450902--44451717	57	14.2	56	84	8	986	49	23	0	26	1.50
44451084--44451701	164	3.7	164	92	3	950	49	23	0	26	1.50
44451627--44451701	29	2.7	26	95	2	96	52	21	0	26	1.47
44451715--44451771	26	2.2	26	100	0	114	26	7	7	59	1.49
44451867--44451891	10	2.5	10	100	0	50	44	8	0	48	1.32
44456698--44456748	21	2.4	22	87	9	70	70	11	5	11	1.32
44457255--44457304	26	1.9	26	84	8	66	26	12	2	60	1.43
44457379--44457428	22	2.2	23	92	3	84	50	0	26	24	1.50
44457379--44457429	11	4.5	11	87	2	66	49	0	25	25	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44468778--44468839	23	2.7	23	87	5	90	40	24	17	17	1.91
44468778--44468852	23	3.3	23	84	3	71	42	22	16	18	1.88
44472914--44472961	21	2.5	18	75	18	51	20	29	8	41	1.81
44472919--44472974	21	2.6	21	82	2	76	21	32	8	37	1.84
44476747--44476966	50	4.4	50	81	1	156	23	28	19	29	1.98
44476734--44476864	49	2.6	48	80	8	138	25	25	18	30	1.98
44476783--44477027	50	4.8	50	80	4	204	23	28	20	27	1.99
44476783--44476971	100	1.9	100	83	0	243	22	29	20	26	1.99
44480251--44480312	31	2.0	31	100	0	124	41	16	9	32	1.80
44486403--44486464	31	2.0	31	96	0	115	41	17	9	30	1.82
44494281--44494323	17	2.5	17	82	14	52	69	9	6	13	1.35
44503534--44503569	18	1.9	19	94	5	65	36	19	0	44	1.51
44511572--44511612	19	2.1	20	90	4	66	53	0	26	19	1.45
44515635--44515683	20	2.5	19	86	6	62	10	34	20	34	1.86
44519384--44519465	27	3.1	27	80	3	96	35	14	18	31	1.91
44527001--44527072	27	2.7	27	82	2	92	31	15	18	34	1.92
44528848--44528908	25	2.4	28	78	18	78	44	0	14	40	1.46
44529752--44529806	24	2.3	24	84	6	67	56	7	3	32	1.44
44537303--44537525	40	5.6	39	83	5	232	26	27	20	25	1.99
44537303--44537525	120	1.9	119	81	6	272	26	27	20	25	1.99
44544796--44545018	40	5.6	39	85	3	241	26	27	20	24	1.99
44544796--44545018	120	1.9	119	81	6	272	26	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44556920--44557139	29	7.4	30	76	10	143	23	26	11	38	1.89
44556981--44557139	59	2.7	59	81	4	162	23	26	11	38	1.89
44562391--44562464	30	2.5	28	82	8	76	28	27	8	36	1.85
44562467--44562640	29	5.9	28	71	14	86	18	27	15	39	1.91
44565204--44565551	181	1.9	181	95	1	626	32	17	15	35	1.91
44567078--44567129	10	5.1	10	84	11	52	32	0	7	59	1.26
44576555--44576622	25	2.7	25	75	6	75	30	22	16	30	1.95
44580982--44581026	22	2.0	22	83	8	56	40	4	0	55	1.20
44594835--44594871	18	2.0	19	89	5	58	5	43	0	51	1.24
44598009--44598145	50	2.7	50	81	0	157	25	22	28	23	1.99
44604618--44604815	50	3.8	50	82	5	209	28	21	27	22	1.99
44608512--44608624	47	2.3	49	88	8	178	33	5	28	32	1.80
44608592--44608652	28	2.2	28	97	2	115	37	0	26	36	1.57
44608512--44608752	128	1.9	125	91	5	396	33	5	28	31	1.81
44608545--44608697	77	2.0	74	91	3	243	34	3	28	32	1.76
44608619--44609299	47	13.8	49	88	8	967	32	7	29	30	1.85
44608638--44609246	155	4.0	152	90	7	918	32	7	28	30	1.86
44612504--44613146	49	13.4	49	82	13	751	32	7	29	29	1.85
44612520--44612728	113	1.9	113	92	3	359	33	7	28	29	1.85
44612631--44613146	139	3.7	138	86	10	647	32	8	29	29	1.86
44612631--44613146	239	2.2	225	87	7	718	32	8	29	29	1.86
44614084--44614116	16	2.1	16	88	11	50	57	0	9	33	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44618798--44618827	7	4.3	7	100	0	60	46	0	0	53	1.00
44622290--44622333	14	3.1	14	83	6	52	52	2	0	45	1.13
44622336--44622406	25	2.9	24	87	4	97	32	8	7	52	1.59
44622336--44622448	25	4.6	25	74	12	90	31	5	6	56	1.46
44623006--44623045	21	2.0	21	85	5	55	67	7	2	22	1.28
44637573--44637621	18	2.6	18	77	6	53	18	22	6	53	1.66
44639673--44639784	27	4.2	27	76	10	104	17	21	22	38	1.93
44642456--44642506	24	2.1	24	88	0	75	27	19	29	23	1.98
44642605--44642698	38	2.5	37	86	3	134	32	12	23	30	1.92
44646388--44646440	26	2.0	27	88	3	81	22	20	24	32	1.98
44651775--44651821	19	2.6	18	87	12	69	70	2	4	23	1.16
44655239--44655270	16	2.0	16	93	0	55	25	15	0	59	1.36
44655401--44655492	46	2.1	43	81	6	103	31	23	19	25	1.98
44655501--44655688	51	3.7	51	81	9	240	30	29	17	23	1.97
44655496--44655680	101	1.8	102	90	3	302	30	28	17	23	1.97
44658624--44658654	5	6.0	5	92	7	53	80	0	0	19	0.71
44662195--44662265	24	2.8	27	73	18	71	30	23	8	36	1.85
44662788--44662883	46	2.1	46	96	1	176	21	15	13	48	1.79
44662807--44662880	24	3.2	24	60	21	57	18	13	13	54	1.71
44665335--44665375	7	5.9	7	94	0	73	75	0	9	14	1.04
44665334--44665375	21	2.0	21	100	0	84	76	0	9	14	1.02
44667478--44667517	12	3.5	12	90	10	66	7	0	52	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44677087--44677148	26	2.4	26	94	0	106	38	14	12	33	1.84
44677286--44677318	15	2.2	15	100	0	66	45	30	6	18	1.73
44679516--44679567	15	3.2	15	73	19	50	44	0	1	53	1.11
44679654--44679688	16	2.2	16	89	0	52	57	2	0	40	1.14
44681353--44681445	45	2.1	45	93	0	159	18	27	9	44	1.81
44693611--44693651	16	2.6	16	96	0	73	9	26	9	53	1.65
44694867--44694908	17	2.3	18	88	8	59	23	0	0	76	0.79
44694875--44694905	16	1.9	16	93	0	53	19	0	0	80	0.71
44695040--44695064	9	2.8	9	100	0	50	24	0	0	76	0.80
44698412--44698460	23	2.3	22	82	10	66	57	12	0	30	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226