genome.fa.s24.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  47  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15877428--15877514	45	1.9	45	95	0	156	21	16	37	24	1.93
15880337--15880569	104	2.3	103	87	1	333	21	19	26	32	1.97
15880548--15880663	33	3.4	33	82	11	151	19	17	27	35	1.94
15880469--15880667	71	2.7	75	83	6	248	21	18	27	33	1.96
15882388--15882460	21	3.5	21	71	0	65	39	15	26	19	1.90
15882403--15882515	42	2.7	43	83	5	142	42	16	24	15	1.88
15889713--15889754	20	2.2	20	91	4	68	45	7	4	42	1.52
15899773--15899824	24	2.2	24	89	0	77	50	9	3	36	1.54
15901034--15901098	13	5.0	14	68	22	52	63	0	0	36	0.95
15901068--15901106	20	2.0	20	94	0	69	58	0	0	41	0.98
15902415--15902468	16	3.4	16	89	0	81	35	0	33	31	1.58
15902700--15902734	18	2.0	17	88	5	52	54	0	0	45	0.99
15902820--15902854	18	2.0	17	88	5	52	54	0	0	45	0.99
15902680--15902975	59	5.0	57	68	17	208	48	4	2	44	1.34
15902680--15903012	120	2.8	120	97	0	623	48	5	2	44	1.36
15902938--15902974	16	2.2	17	86	13	51	54	0	2	43	1.14
15902994--15903031	18	2.1	19	85	14	53	47	5	5	42	1.48
15906627--15906678	16	3.2	16	97	0	95	26	0	34	38	1.57
15906894--15906935	15	2.7	16	82	14	52	52	2	0	45	1.13
15906903--15906944	15	2.9	15	82	10	52	52	0	0	47	1.00
15907110--15907163	15	3.9	15	72	16	53	51	1	0	46	1.11
15907085--15907340	91	2.8	90	95	1	444	46	2	3	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15907110--15907341	44	5.2	43	69	15	184	47	2	2	46	1.29
15909910--15909960	3	17.0	3	87	0	57	31	0	31	37	1.58
15918109--15918156	21	2.3	21	96	0	87	22	37	10	29	1.88
15919934--15919979	24	1.9	24	100	0	92	52	26	4	17	1.63
15920687--15920857	41	4.2	41	89	0	252	22	27	19	30	1.98
15922626--15922652	13	2.1	13	100	0	54	48	22	0	29	1.51
15925751--15925808	30	1.9	30	89	0	89	29	24	1	44	1.63
15931120--15931269	28	5.4	28	92	3	232	26	12	27	34	1.92
15939128--15939278	28	5.4	28	94	1	241	27	11	27	33	1.92
15939128--15939292	83	2.0	85	85	6	228	28	11	25	34	1.91
15944003--15944295	50	5.8	50	87	2	417	20	29	23	26	1.99
15944431--15944465	15	2.3	15	100	0	70	57	22	0	20	1.41
15944647--15944704	30	1.9	30	86	6	82	29	24	5	41	1.76
15947351--15947405	25	2.2	25	81	12	69	21	1	3	72	1.09
15948744--15948804	18	3.4	19	68	23	51	44	14	8	32	1.75
15958368--15958411	23	1.9	23	90	0	70	59	9	2	29	1.41
15959561--15959603	22	2.0	22	81	9	52	39	13	2	44	1.57
15964331--15964398	34	2.0	34	85	0	91	35	0	14	50	1.44
15975937--15975988	26	2.0	26	92	0	86	28	34	21	15	1.94
15975949--15976098	70	2.1	71	92	1	248	30	30	16	23	1.96
15976018--15976240	104	2.2	103	92	2	367	31	31	18	17	1.95
15976568--15976631	30	2.2	29	81	10	76	29	28	6	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15976575--15976631	30	1.9	30	85	3	80	29	24	7	38	1.82
15983482--15983632	70	2.1	71	91	2	241	30	29	17	23	1.97
15983551--15983772	102	2.2	104	90	4	360	31	31	18	18	1.95
15984101--15984164	30	2.2	29	81	10	76	29	28	6	35	1.82
15984108--15984164	30	1.9	30	85	3	80	29	24	7	38	1.82
15985703--15985727	13	1.9	13	100	0	50	44	8	0	48	1.32
15989868--15989962	30	3.1	31	78	4	102	30	6	15	47	1.71
15989954--15990142	48	3.9	48	89	0	288	29	16	22	31	1.96
15993131--15993189	31	1.9	31	85	0	82	55	13	15	15	1.69
15996256--15996330	28	2.7	27	76	15	66	56	0	4	40	1.18
15996309--15996358	6	8.3	6	82	6	57	50	4	0	46	1.20
15996420--15996463	8	5.4	8	81	5	52	38	2	2	56	1.24
15996424--15996464	17	2.3	18	87	4	57	34	2	2	60	1.23
15996461--15996511	23	2.2	24	82	10	61	62	1	0	35	1.06
15996893--15996917	11	2.3	11	100	0	50	72	8	0	20	1.10
15997159--15997301	43	3.3	43	89	1	207	23	28	20	26	1.99
15997616--15997706	21	4.3	21	92	0	137	6	45	16	31	1.73
15997662--15997859	87	2.3	87	88	1	281	10	30	19	39	1.85
15997748--15997793	21	2.2	21	84	0	56	2	36	19	41	1.64
16000852--16000944	3	30.3	3	76	12	82	30	3	3	63	1.26
16000864--16000949	33	2.6	34	85	7	108	30	4	2	62	1.28
16002574--16002618	23	2.0	23	82	8	56	40	31	6	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16003581--16003699	40	3.0	39	79	4	121	19	18	22	39	1.92
16010668--16010693	13	2.0	13	100	0	52	30	15	23	30	1.95
16014306--16014346	21	2.0	21	90	0	64	29	21	29	19	1.98
16020493--16020518	13	2.0	13	100	0	52	30	15	23	30	1.95
16024787--16024880	48	2.0	48	87	8	138	40	27	12	19	1.88
16027303--16027396	48	2.0	48	87	8	138	40	27	12	19	1.88
16030196--16030243	14	3.3	14	75	11	51	27	6	18	47	1.72
16031128--16031421	75	3.9	75	84	3	376	27	18	21	32	1.97
16031153--16031423	150	1.8	150	90	1	436	27	18	21	32	1.96
16035031--16035084	25	2.1	26	86	3	74	61	1	3	33	1.25
16043733--16043773	21	2.0	21	90	0	64	19	29	21	29	1.98
16051742--16051779	19	2.0	19	100	0	76	42	10	10	36	1.74
16053835--16053892	30	1.9	30	89	0	89	41	3	24	31	1.71
16054103--16054134	13	2.5	13	94	0	55	31	0	12	56	1.37
16054229--16054470	50	4.7	50	86	4	297	26	24	29	19	1.99
16054229--16054478	100	2.4	103	88	6	364	26	24	29	20	1.99
16061436--16061493	30	1.9	30	89	0	89	41	3	24	31	1.71
16061705--16061736	13	2.5	13	94	0	55	31	0	12	56	1.37
16061831--16062072	50	4.7	50	86	4	297	26	24	29	19	1.99
16061831--16062080	100	2.4	103	88	6	364	26	24	29	20	1.99
16066964--16067116	43	3.6	43	90	3	220	24	18	26	30	1.98
16071504--16071593	44	2.0	44	97	0	171	28	21	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16074674--16074826	43	3.6	43	89	5	213	24	17	26	31	1.97
16080504--16080556	23	2.4	22	75	9	54	9	18	1	69	1.25
16080568--16080711	71	2.0	71	98	0	279	9	25	2	61	1.40
16085846--16085940	46	2.1	46	100	0	190	18	15	18	46	1.84
16091343--16091382	8	5.0	8	93	0	53	10	50	0	40	1.36
16091347--16091382	12	3.0	12	91	0	54	8	50	0	41	1.33
16098874--16098926	25	2.2	24	89	3	79	18	24	20	35	1.95
16104074--16104133	24	2.5	24	78	7	61	68	0	3	28	1.05
16104090--16104175	16	5.1	16	70	18	59	65	0	3	31	1.10
16111017--16111053	19	2.0	19	94	5	67	83	0	0	16	0.64
16111016--16111052	14	2.7	14	84	16	51	86	0	0	13	0.57
16114980--16115057	34	2.3	34	86	0	111	23	10	29	37	1.88
16116979--16117023	19	2.5	17	80	13	54	35	2	13	48	1.54
16118029--16118062	18	1.9	18	94	5	61	55	2	0	41	1.15
16118461--16118558	8	12.8	8	68	16	64	56	0	1	42	1.06
16118468--16118571	24	4.2	24	72	13	79	54	0	0	44	1.06
16119281--16119340	29	2.1	29	81	12	70	43	6	5	45	1.52
16121393--16121426	16	2.1	16	94	0	59	14	26	0	58	1.36
16130237--16130271	15	2.3	15	90	9	54	51	22	0	25	1.48
16130939--16131386	41	10.9	41	87	1	567	34	27	17	20	1.95
16130978--16131369	82	4.8	82	97	0	714	34	27	17	20	1.95
16131499--16131679	64	2.9	65	86	9	243	41	18	8	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16137369--16137403	15	2.3	15	90	9	54	51	22	0	25	1.48
16138071--16138518	41	10.9	41	87	1	567	34	27	17	20	1.95
16138110--16138501	82	4.8	82	97	0	714	34	27	17	20	1.95
16138631--16138811	64	2.9	63	89	8	262	41	17	8	32	1.79
16148078--16148120	18	2.5	17	84	3	59	53	2	2	41	1.26
16153603--16153629	11	2.5	11	100	0	54	55	0	33	11	1.35
16155215--16155268	26	2.1	26	92	0	90	29	18	11	40	1.85
16155224--16155269	14	3.4	14	75	22	53	30	19	8	41	1.82
16156026--16156567	114	4.8	112	76	10	442	24	23	25	27	2.00
16156037--16156567	228	2.3	228	78	5	531	24	22	24	27	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226