genome.fa.s24.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  30  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10414496--10414525	15	2.1	15	93	6	53	30	0	36	33	1.58
10414654--10414693	21	1.9	21	94	0	71	10	0	52	37	1.35
10417912--10417999	43	2.1	42	82	4	106	32	18	18	30	1.95
10417927--10418124	43	4.7	42	73	7	150	30	18	21	29	1.97
10420577--10420762	93	2.0	93	94	0	327	41	10	12	35	1.78
10422867--10422893	3	9.0	3	100	0	54	33	0	0	66	0.92
10423548--10423602	21	2.6	21	97	0	101	25	9	34	30	1.87
10423813--10423876	33	2.0	32	87	3	92	46	0	3	50	1.17
10427781--10427882	41	2.5	41	96	0	186	21	30	20	27	1.98
10427863--10428007	41	3.5	41	88	1	193	31	26	17	24	1.97
10428344--10428753	201	2.1	196	93	3	705	42	15	4	37	1.67
10429728--10429752	13	1.9	13	100	0	50	40	24	4	32	1.73
10435521--10435622	41	2.5	41	96	0	186	21	30	20	27	1.98
10435603--10435788	41	4.5	41	90	1	266	32	24	18	24	1.97
10436121--10436551	203	2.2	196	90	5	650	42	15	4	38	1.66
10437513--10437537	13	1.9	13	100	0	50	40	24	4	32	1.73
10439082--10439175	9	10.4	9	89	0	125	42	25	7	24	1.80
10443407--10443458	24	2.2	24	89	0	77	55	9	1	32	1.43
10445373--10445424	24	2.2	24	89	0	77	55	9	1	32	1.43
10450954--10451048	39	2.4	40	83	1	111	37	23	21	17	1.94
10451364--10451414	22	2.4	21	83	3	66	25	0	29	45	1.54
10451418--10451496	15	5.5	14	70	19	56	18	0	31	49	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10451514--10451546	16	2.1	16	88	11	50	42	0	0	57	0.98
10451795--10451854	10	5.8	10	75	11	50	46	0	5	48	1.24
10451792--10451854	20	3.1	20	73	11	65	49	0	4	46	1.23
10452238--10452294	27	2.1	27	100	0	114	52	7	12	28	1.64
10456341--10456484	43	3.4	42	89	3	207	21	15	28	34	1.94
10461113--10461222	54	2.0	54	100	0	220	46	20	9	24	1.79
10461880--10462001	28	4.4	28	85	2	149	34	12	24	28	1.92
10461883--10462001	55	2.2	54	84	6	150	34	11	24	29	1.91
10461927--10462014	27	3.2	27	82	7	81	40	13	20	25	1.89
10464671--10464793	25	5.0	25	69	15	87	18	26	21	34	1.96
10466117--10466173	14	4.4	13	72	16	55	61	0	1	36	1.07
10478898--10479060	81	2.0	81	97	0	308	34	15	15	33	1.90
10484810--10484837	14	2.0	14	100	0	56	28	14	35	21	1.92
10505884--10505920	18	2.1	18	100	0	74	48	5	16	29	1.68
10505979--10506022	18	2.4	19	81	14	56	31	2	4	61	1.28
10508418--10509255	421	2.0	421	99	0	1667	35	13	19	31	1.90
10509600--10509642	23	2.0	22	86	9	61	41	4	9	44	1.57
10510179--10510212	17	1.9	17	88	5	50	47	0	17	35	1.48
10510945--10510993	21	2.4	20	79	3	62	18	18	24	38	1.93
10511378--10511428	25	2.0	25	96	0	93	37	5	19	37	1.76
10524838--10524868	9	3.4	9	90	0	53	25	12	22	38	1.90
10525317--10525356	20	1.9	21	85	10	55	22	22	0	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10527696--10527764	23	2.9	22	72	12	57	28	21	30	18	1.97
10527757--10527830	26	2.9	25	78	13	87	39	24	21	14	1.91
10527625--10527830	24	8.4	25	71	10	97	34	21	26	17	1.95
10532598--10532630	17	1.9	17	93	0	57	12	18	3	66	1.36
10533604--10533649	19	2.4	19	85	10	58	39	17	6	36	1.76
10533616--10533661	19	2.6	18	86	10	67	39	10	2	47	1.51
10534892--10534948	11	4.9	11	75	10	51	38	12	3	45	1.59
10534895--10534948	24	2.3	24	83	3	74	37	12	3	46	1.60
10536275--10536339	30	2.2	30	97	0	121	23	3	15	58	1.51
10542017--10542069	28	2.0	26	88	7	79	20	13	7	58	1.59
10543761--10543826	6	9.8	6	73	20	51	77	0	21	1	0.85
10543762--10543826	20	3.2	21	82	4	80	78	0	20	1	0.83
10543925--10543981	29	2.0	29	93	6	98	57	5	12	24	1.55
10544721--10544758	14	2.8	14	84	4	51	50	10	5	34	1.59
10546733--10547126	92	4.4	91	86	5	500	26	23	19	30	1.98
10546997--10547169	44	3.9	43	75	9	152	28	23	18	30	1.98
10546722--10547142	181	2.3	180	83	7	541	26	23	18	31	1.97
10555244--10555283	20	2.0	20	95	0	71	30	12	25	32	1.92
10558665--10558709	14	3.3	14	81	3	56	51	11	4	33	1.58
10573279--10573314	18	1.9	19	94	5	65	63	0	0	36	0.94
10573273--10573333	29	2.1	29	87	0	86	62	0	1	36	1.05
10578468--10578500	16	1.9	18	88	11	52	60	6	12	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10579282--10579346	32	2.1	32	97	2	123	46	12	9	32	1.73
10582668--10582768	41	2.5	41	83	6	116	19	28	19	31	1.97
10582708--10582785	41	1.9	41	91	0	129	20	29	23	26	1.99
10582708--10582800	41	2.3	41	86	0	123	22	27	21	27	1.99
10589318--10589366	25	1.9	26	91	4	82	40	10	16	32	1.82
10595717--10595776	32	1.9	31	86	3	84	48	6	5	40	1.51
10598573--10598665	45	2.0	47	85	8	129	63	8	15	12	1.51
10619730--10619854	42	3.0	42	98	0	241	27	26	24	21	1.99
10630808--10630865	30	1.9	30	89	0	89	41	3	24	31	1.71
10631077--10631108	13	2.5	13	94	0	55	31	0	12	56	1.37
10631203--10631493	50	5.7	50	88	4	388	26	24	29	19	1.98
10631203--10631493	99	2.8	98	88	5	384	26	24	29	19	1.98
10638451--10638508	30	1.9	30	89	0	89	41	3	24	31	1.71
10638720--10638751	13	2.5	13	94	0	55	31	0	12	56	1.37
10638846--10639087	50	4.7	50	86	4	297	26	24	29	19	1.99
10638846--10639095	100	2.4	103	88	6	364	26	24	29	20	1.99
10640875--10640978	41	2.7	38	79	5	111	35	21	14	28	1.92
10641842--10641877	17	2.0	18	89	10	56	0	27	0	72	0.85
10641931--10641983	22	2.5	22	87	9	74	18	3	5	71	1.21
10642027--10642076	19	2.6	20	84	6	59	36	8	4	52	1.50
10642767--10642800	18	1.9	17	94	5	59	50	0	0	50	1.00
10644297--10644374	3	25.7	3	75	7	68	64	2	3	29	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10644430--10644483	15	3.5	14	77	20	54	74	1	1	22	1.02
10644430--10644478	17	3.0	17	82	8	66	73	2	2	22	1.04
10644602--10644635	17	1.9	18	88	5	52	70	8	2	17	1.25
10657976--10658006	14	2.1	15	94	5	55	29	6	0	64	1.18
10657981--10658013	14	2.4	14	90	5	50	27	6	0	66	1.15
10664229--10664285	23	2.5	22	86	10	80	59	0	0	40	0.97
10668865--10668937	10	7.5	10	68	27	50	38	2	0	58	1.12
10668844--10668955	30	3.7	28	81	11	125	38	2	0	58	1.19
10668854--10668937	39	2.1	40	82	8	100	39	3	0	57	1.16
10671006--10671104	28	3.6	27	84	9	119	31	12	28	28	1.92
10683573--10683602	6	5.0	6	100	0	60	33	0	0	66	0.92
10687737--10687777	3	13.7	3	100	0	82	65	0	34	0	0.93
10687791--10687850	3	20.0	3	85	0	84	36	30	30	3	1.74
10687792--10687855	24	2.7	24	97	0	119	37	29	28	4	1.77
10688170--10688204	18	1.9	18	88	0	52	37	22	28	11	1.89
10688172--10688212	12	3.4	12	79	0	55	36	21	31	9	1.86
10687830--10688506	348	1.9	348	97	0	1273	42	15	20	20	1.88
10688489--10688540	3	17.3	3	100	0	104	67	0	32	0	0.91
10691028--10691055	5	5.6	5	100	0	56	42	57	0	0	0.99
10691160--10691216	9	6.3	9	82	8	71	24	12	21	42	1.87
10691167--10691216	18	2.8	18	90	0	82	26	12	22	40	1.88
10700242--10700273	16	2.0	16	93	0	55	25	3	0	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10706260--10706325	28	2.4	28	80	9	73	43	1	1	53	1.19
10707845--10707879	16	2.2	16	90	10	54	28	5	2	62	1.32
10716110--10716173	30	2.1	32	88	5	96	31	9	7	51	1.62
10716574--10716615	21	1.9	23	85	9	61	16	2	16	64	1.40
10726775--10726809	17	2.1	17	89	10	54	60	0	0	40	0.97
10727538--10727629	41	2.2	40	86	7	123	30	23	19	26	1.98
10727567--10727644	41	1.9	40	84	10	104	29	25	19	25	1.98
10729378--10729402	13	1.9	13	100	0	50	68	24	0	8	1.16
10742206--10742257	24	2.2	24	89	0	77	55	9	1	32	1.43
10744176--10744227	24	2.2	24	89	0	77	55	9	1	32	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226