genome.fa.s24.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  205  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61340713--61340772	31	1.9	31	86	6	86	28	3	11	56	1.51
61343084--61343490	210	1.9	210	86	1	573	32	21	14	32	1.93
61349089--61349271	41	4.5	41	92	1	296	15	16	28	38	1.90
61349702--61349782	23	3.5	23	71	22	71	23	2	24	49	1.62
61352305--61352424	47	2.6	47	98	0	231	27	5	20	47	1.70
61352318--61352390	22	3.2	22	63	30	53	27	5	19	47	1.71
61352534--61352558	12	2.1	12	100	0	50	20	16	16	48	1.82
61353723--61353780	29	2.0	29	100	0	116	31	24	3	41	1.71
61353911--61353959	16	2.9	16	80	11	53	38	14	2	44	1.56
61353910--61353966	9	6.7	9	76	9	57	42	12	1	43	1.52
61353933--61353964	16	2.0	16	93	0	55	46	12	0	40	1.42
61354059--61354128	12	6.0	12	78	6	72	47	18	2	31	1.63
61354182--61354833	9	71.8	9	78	6	679	47	17	3	31	1.64
61357198--61357332	66	2.0	66	92	0	225	40	18	26	14	1.88
61357198--61357358	66	2.4	65	86	6	191	41	19	25	13	1.88
61357613--61357793	43	4.2	43	85	5	224	25	18	27	28	1.98
61357631--61357793	86	1.9	86	89	5	258	26	20	27	25	1.99
61358547--61358577	16	1.9	16	93	0	53	16	12	9	61	1.56
61360425--61360507	41	2.0	41	100	0	166	51	21	12	14	1.74
61373078--61373119	18	2.3	18	91	0	66	64	0	2	33	1.07
61378586--61378985	210	1.9	210	86	2	579	30	20	16	32	1.94
61388953--61389024	3	24.3	3	80	5	58	62	5	1	30	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61389023--61389060	3	12.7	3	89	10	60	34	0	0	65	0.93
61392758--61393146	210	1.9	210	86	1	564	31	22	14	32	1.93
61404097--61404152	25	2.2	25	81	12	62	57	3	7	32	1.43
61406452--61406482	2	15.5	2	100	0	62	51	0	0	48	1.00
61407594--61407734	69	2.1	69	82	5	171	38	18	9	34	1.83
61407785--61407824	19	2.2	19	86	4	55	52	2	5	40	1.37
61407835--61407937	30	3.5	29	73	12	86	66	1	2	28	1.16
61407853--61407896	19	2.3	19	84	7	54	75	2	4	18	1.09
61407864--61407929	19	3.4	19	72	4	60	69	3	3	24	1.16
61407854--61407929	39	1.9	39	83	2	98	69	2	3	23	1.18
61407853--61407936	20	4.2	20	73	3	71	69	2	3	25	1.17
61408142--61408192	23	2.3	21	83	12	59	37	1	1	58	1.20
61408264--61408488	90	2.3	94	79	13	219	30	6	17	45	1.73
61409649--61409691	17	2.6	16	81	7	50	65	4	0	30	1.13
61410830--61410893	24	2.6	24	75	9	58	57	4	6	31	1.44
61410849--61410944	8	12.4	7	70	24	52	63	3	4	29	1.28
61410874--61410935	17	3.7	17	79	10	65	66	1	3	29	1.17
61410864--61410942	34	2.3	35	76	8	90	65	1	3	29	1.17
61412896--61412938	18	2.4	18	100	0	86	30	4	0	65	1.13
61416023--61416116	47	2.0	47	95	0	170	27	19	21	31	1.97
61426006--61426040	3	11.7	3	100	0	70	65	0	0	34	0.93
61428501--61428525	10	2.5	10	100	0	50	56	8	0	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61428552--61428613	9	6.4	10	73	16	51	69	0	3	27	1.04
61429552--61429583	3	10.7	3	100	0	64	34	31	0	34	1.58
61431093--61431153	23	2.7	22	82	10	61	11	9	6	72	1.29
61432778--61432814	9	4.1	9	92	0	65	29	10	13	45	1.77
61432868--61432898	9	3.4	9	90	0	53	38	22	12	25	1.90
61438233--61438362	65	2.0	65	98	0	251	12	16	27	43	1.83
61454092--61454136	22	2.0	22	82	8	54	48	11	0	40	1.39
61463369--61463402	17	1.9	17	88	5	50	2	29	0	67	1.05
61466521--61466586	25	2.6	25	100	0	132	46	9	0	43	1.35
61467562--61467621	28	2.1	28	81	0	66	21	1	30	46	1.61
61467574--61467627	14	3.9	14	77	0	54	18	1	33	46	1.60
61467675--61467776	7	14.7	7	75	10	75	15	0	34	49	1.52
61467709--61467740	15	2.1	15	94	0	55	12	0	34	53	1.39
61467675--61467774	49	2.0	49	83	7	123	15	1	34	50	1.51
61467675--61467776	34	3.2	33	75	13	104	15	0	34	49	1.52
61467615--61467928	156	2.1	150	92	4	515	19	5	26	49	1.69
61467824--61468007	7	26.0	7	70	13	83	19	1	35	44	1.60
61467856--61467908	22	2.5	21	82	11	63	18	0	35	45	1.50
61467826--61467974	70	2.1	70	78	7	151	18	2	36	43	1.61
61468407--61468484	41	2.0	39	87	7	113	55	5	3	35	1.40
61468583--61468981	125	3.2	124	83	3	482	33	16	19	30	1.94
61471880--61471904	5	5.0	5	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61481106--61481190	24	3.3	24	68	17	71	27	0	23	49	1.50
61481090--61481258	54	2.9	54	81	14	203	30	1	21	46	1.62
61481142--61481310	65	2.6	65	89	1	259	29	1	24	43	1.64
61484338--61484371	17	1.9	17	88	5	50	2	29	0	67	1.05
61488589--61488631	3	14.7	3	90	4	70	65	2	0	32	1.06
61491177--61491201	5	5.0	5	100	0	50	20	0	0	80	0.72
61498397--61498437	21	2.0	21	81	18	50	31	19	26	21	1.97
61501564--61501638	38	1.9	38	82	12	91	53	1	1	44	1.17
61501636--61501682	20	2.2	21	85	7	60	14	17	6	61	1.53
61512770--61512813	22	1.9	24	86	9	65	18	22	18	40	1.91
61518471--61518508	14	2.5	15	87	12	60	21	0	26	52	1.47
61521651--61521695	18	2.5	18	96	0	81	48	11	0	40	1.39
61521655--61521695	9	4.6	9	81	0	55	46	12	0	41	1.41
61521717--61521750	17	1.9	18	88	5	52	38	5	0	55	1.24
61521876--61521926	9	5.7	9	80	0	66	47	11	0	41	1.40
61521876--61521926	18	2.8	18	93	0	84	47	11	0	41	1.40
61521651--61522086	231	1.9	232	97	0	829	46	12	1	39	1.51
61521923--61521960	13	3.0	13	84	3	51	44	2	0	52	1.14
61522056--61522355	9	32.9	9	77	8	279	49	15	0	34	1.50
61523878--61523932	9	6.1	9	82	0	74	49	10	0	40	1.38
61523878--61523932	18	3.1	18	94	0	92	49	10	0	40	1.38
61523865--61523930	27	2.4	27	87	2	87	46	12	1	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61523954--61523987	17	1.9	18	88	5	52	38	5	0	55	1.24
61524143--61524176	17	1.9	18	88	5	52	55	0	5	38	1.24
61524198--61524250	9	5.9	9	79	0	61	37	0	11	50	1.38
61524198--61524250	18	2.9	18	94	0	88	37	0	11	50	1.38
61524201--61524265	27	2.4	27	81	2	67	36	1	12	49	1.50
61524639--61524690	24	2.2	24	89	0	77	55	7	1	34	1.39
61526608--61526659	24	2.2	24	89	0	77	55	9	1	32	1.43
61526811--61526865	9	6.1	9	82	0	74	40	0	10	49	1.38
61526811--61526865	18	3.1	18	94	0	92	40	0	10	49	1.38
61526813--61526878	27	2.4	27	87	2	87	39	1	12	46	1.50
61526936--61526969	17	1.9	18	88	5	52	55	0	5	38	1.24
61526993--61527027	9	3.9	9	84	0	52	37	0	14	48	1.44
61526991--61527035	18	2.5	18	96	0	81	40	0	11	48	1.39
61538541--61538594	26	2.1	26	96	0	99	25	7	20	46	1.77
61543294--61543318	5	5.0	5	100	0	50	60	0	0	40	0.97
61543294--61543327	15	2.3	15	89	0	50	58	0	2	38	1.13
61543715--61543808	48	2.0	48	87	8	138	40	27	12	19	1.88
61557104--61557157	4	13.5	4	76	21	51	20	5	0	74	1.02
61558192--61558248	19	3.1	18	78	14	62	77	3	0	19	0.92
61558192--61558248	6	9.2	6	81	7	60	77	3	0	19	0.92
61558192--61558248	25	2.3	25	81	6	71	77	3	0	19	0.92
61558194--61558251	13	4.5	13	77	12	57	77	3	0	18	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61568015--61568050	18	1.9	19	94	5	65	16	5	11	66	1.40
61568015--61568057	18	2.3	18	88	4	59	20	4	9	65	1.40
61589994--61590053	31	1.9	32	82	3	77	40	13	11	35	1.81
61595219--61595271	24	2.2	25	82	3	63	16	5	26	50	1.67
61596133--61596166	12	3.1	11	91	8	52	35	0	2	61	1.11
61596289--61596351	30	2.1	30	93	0	108	55	12	3	28	1.52
61603131--61603176	24	1.9	24	90	0	74	58	2	8	30	1.40
61603430--61603491	25	2.5	25	84	5	81	58	3	6	32	1.40
61603478--61603560	22	3.7	23	80	7	98	53	0	6	40	1.26
61603430--61603561	46	2.8	47	79	6	133	55	1	6	37	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226