genome.fa.s24.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  103  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31849247--31849440	96	2.0	96	97	2	372	39	18	9	32	1.83
31853436--31853487	23	2.2	23	86	6	68	63	0	26	9	1.25
31854593--31854637	19	2.2	21	84	7	58	62	0	4	33	1.15
31854591--31854637	20	2.3	22	78	14	55	61	0	4	34	1.15
31857167--31857200	17	2.0	17	88	0	50	32	2	0	64	1.08
31858287--31858361	6	12.5	6	88	0	114	28	68	1	2	1.12
31862268--31862316	23	2.2	23	82	7	66	40	2	4	53	1.32
31864265--31864432	23	7.3	23	84	0	210	25	20	23	29	1.99
31864265--31864432	46	3.7	46	91	0	255	25	20	23	29	1.99
31865388--31865628	41	5.9	41	89	0	347	19	17	33	28	1.95
31865978--31866024	14	3.3	15	85	8	62	25	2	34	38	1.68
31866011--31866089	22	3.7	21	72	12	63	21	1	39	37	1.62
31866125--31866165	12	3.5	11	83	9	55	29	0	2	68	1.03
31866124--31866178	24	2.3	23	84	3	74	36	0	1	61	1.06
31866375--31866432	21	2.8	21	89	5	82	24	0	44	31	1.54
31865819--31866497	338	2.0	336	82	7	813	30	2	23	43	1.66
31866769--31866812	20	2.2	20	88	8	63	79	4	2	13	0.98
31866771--31866813	13	3.4	13	80	6	52	76	4	2	16	1.05
31870729--31870805	24	3.5	24	67	30	73	11	6	20	61	1.52
31870723--31870779	17	3.1	17	72	18	51	10	3	26	59	1.46
31870716--31870783	19	3.5	19	72	18	68	13	2	23	60	1.47
31870903--31870968	34	1.9	35	84	9	91	40	1	3	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31871122--31871367	43	5.7	43	83	2	244	23	16	32	27	1.96
31871122--31871367	129	1.9	128	81	0	294	23	16	32	27	1.96
31872938--31872963	6	4.3	6	100	0	52	30	0	0	69	0.89
31873324--31873381	16	3.6	16	80	0	62	10	48	17	24	1.78
31886643--31886668	13	2.0	13	100	0	52	7	30	38	23	1.83
31887671--31887720	26	1.9	26	91	0	82	28	18	26	28	1.98
31891914--31891969	29	1.9	29	89	7	87	53	14	5	26	1.62
31899551--31899645	30	3.2	30	86	0	118	20	23	33	23	1.97
31905223--31905376	53	2.9	53	81	2	175	44	27	13	14	1.83
31905171--31905419	27	9.3	27	80	0	203	42	23	15	18	1.88
31905171--31905402	107	2.2	107	81	3	261	43	25	14	17	1.87
31909062--31909100	12	2.9	14	85	11	55	35	17	0	46	1.49
31914051--31914101	24	2.1	25	85	3	68	52	7	5	33	1.54
31915860--31916502	50	12.9	50	71	2	367	24	19	23	32	1.97
31915829--31916502	100	6.8	100	87	0	909	24	19	23	32	1.98
31917744--31917785	7	6.0	7	84	13	52	14	11	0	73	1.09
31917744--31917785	15	3.0	14	83	10	59	14	11	0	73	1.09
31948034--31948089	6	9.8	6	81	11	57	19	3	0	76	0.93
31948036--31948089	12	4.8	11	84	11	65	18	3	0	77	0.91
31948043--31948096	27	1.9	29	85	7	76	20	5	0	74	1.02
31949107--31949141	9	3.8	9	92	7	61	88	0	11	0	0.51
31953290--31953335	19	2.4	19	85	3	56	71	6	0	21	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31953425--31953457	9	3.7	9	91	0	57	27	27	12	33	1.92
31954627--31954678	20	2.4	22	87	9	72	48	30	0	21	1.51
31954714--31954805	7	13.0	7	72	11	62	48	28	1	21	1.57
31955089--31955218	41	3.2	41	84	4	172	30	26	20	23	1.98
31955257--31955369	40	2.8	40	80	7	115	22	20	23	34	1.97
31955262--31955372	39	2.8	40	82	9	138	18	20	23	36	1.95
31964374--31964426	16	3.3	16	78	0	61	32	0	9	58	1.30
31964402--31964435	16	2.1	16	88	0	50	26	2	11	58	1.47
31965866--31965916	26	2.0	26	88	0	75	25	19	23	31	1.98
31969679--31969779	49	2.1	49	84	3	132	30	27	14	26	1.95
31971879--31971903	8	3.1	8	100	0	50	76	0	0	24	0.80
31973191--31973219	12	2.4	12	100	0	58	75	6	0	17	1.01
31974355--31974397	17	2.5	17	78	17	52	39	23	11	25	1.88
31975081--31975207	6	21.2	6	99	0	245	33	0	17	48	1.47
31977526--31977575	18	2.7	18	78	3	55	40	0	2	58	1.10
31993598--31993633	6	5.7	6	96	3	54	80	0	13	5	0.88
31993584--31993633	14	3.8	13	84	10	57	78	0	14	8	0.97
31993590--31993633	12	3.2	14	81	15	56	79	0	13	6	0.92
31994039--31994101	30	2.1	30	100	0	126	47	9	11	31	1.71
32014916--32014949	16	2.2	16	89	5	52	76	0	0	23	0.79
32015358--32015395	17	2.1	17	90	9	58	39	0	0	60	0.97
32019393--32019563	27	6.3	27	81	2	209	44	18	19	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32025282--32025338	21	2.7	21	83	0	60	57	1	1	38	1.19
32025315--32025366	26	2.0	26	88	0	77	46	3	1	48	1.31
32028373--32028405	16	2.0	17	88	5	50	45	0	9	45	1.35
32028688--32028729	12	3.3	12	84	12	57	45	0	9	45	1.36
32028687--32028731	14	3.4	14	81	12	58	46	0	8	44	1.34
32030093--32030154	20	3.2	19	76	15	63	62	3	0	33	1.11
32030093--32030183	40	2.3	39	78	12	89	61	5	0	32	1.19
32030138--32030203	28	2.4	27	82	9	73	59	7	0	33	1.26
32033767--32033867	20	5.1	20	82	0	85	31	13	8	45	1.75
32033831--32033882	20	2.6	20	87	0	68	26	19	13	40	1.88
32036819--32036924	45	2.4	45	85	0	149	47	11	17	23	1.80
32037135--32037196	27	2.3	27	85	0	79	35	16	24	24	1.95
32039795--32039873	34	2.3	34	82	6	88	27	18	22	30	1.98
32040332--32040910	27	21.3	27	80	10	508	20	17	21	40	1.91
32040400--32040874	79	5.8	88	78	14	278	20	17	21	40	1.91
32040489--32040911	106	4.0	106	82	6	473	19	17	21	40	1.92
32040334--32040913	133	4.3	133	80	9	627	20	17	21	40	1.91
32045324--32045375	17	2.9	19	77	13	65	0	23	1	75	0.91
32045324--32045375	23	2.3	22	83	12	61	0	23	1	75	0.91
32045325--32045375	13	3.6	14	80	17	61	0	21	1	76	0.88
32045422--32045476	26	2.1	26	83	6	67	23	21	1	52	1.56
32046262--32046318	19	2.8	20	81	13	62	0	24	3	71	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32046262--32046313	13	3.7	14	76	7	52	0	25	1	73	0.94
32046263--32046311	19	2.6	19	87	6	64	0	22	2	75	0.90
32044447--32047344	938	3.0	947	93	4	4844	33	20	9	35	1.85
32059098--32059272	85	2.1	85	100	0	350	38	8	26	26	1.84
32060441--32060624	40	4.6	39	81	9	194	24	22	27	25	2.00
32060493--32060647	79	2.0	79	82	7	190	25	20	27	27	1.99
32065663--32065838	84	2.1	83	95	3	318	37	8	26	27	1.85
32067002--32067186	40	4.7	40	80	7	191	23	21	28	27	1.99
32067057--32067219	79	2.1	79	81	6	188	25	19	28	26	1.98
32068572--32068601	14	2.1	14	100	0	60	16	30	26	26	1.97
32069169--32069232	9	7.0	9	74	1	56	34	14	15	35	1.88
32069169--32069221	18	2.9	18	100	0	106	33	11	16	37	1.85
32069272--32069308	18	2.1	18	94	0	65	51	13	5	29	1.63
32069523--32069582	30	2.0	31	86	3	86	18	35	1	45	1.60
32070342--32070373	15	2.1	15	94	0	55	21	12	15	50	1.77
32074746--32074782	18	2.0	20	89	10	60	56	0	37	5	1.22
32081040--32081083	23	1.9	23	86	9	63	20	15	22	40	1.90
32082669--32082713	18	2.6	16	82	10	54	46	0	37	15	1.46
32085746--32085799	24	2.2	24	93	0	90	51	7	5	35	1.53
32086847--32086873	13	2.1	13	100	0	54	33	22	22	22	1.97
32087033--32087075	22	2.0	22	85	0	59	16	20	27	34	1.94
32087151--32087331	43	4.2	42	84	4	168	27	33	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32087131--32087331	86	2.3	84	82	5	233	28	32	18	20	1.96
32088067--32088118	23	2.3	23	79	0	59	34	9	28	26	1.88
32090259--32090320	31	2.0	31	93	0	106	48	22	16	12	1.80
32092465--32092494	15	2.0	15	100	0	60	26	46	0	26	1.53
32092643--32092704	21	3.0	21	78	4	63	35	45	0	19	1.51
32093216--32093452	41	5.8	40	83	8	264	29	29	21	19	1.98
32093216--32093455	82	2.9	82	85	7	310	29	30	21	19	1.97
32093216--32093451	123	1.9	122	87	2	348	29	29	21	19	1.98
32093486--32093561	39	1.9	39	83	2	98	22	25	22	30	1.99
32093546--32093621	40	1.9	40	88	0	116	23	19	21	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226