genome.fa.s24.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  105  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32610820--32610858	14	2.8	14	88	0	51	41	10	17	30	1.83
32611325--32611392	15	4.4	15	74	18	59	45	0	1	52	1.09
32611416--32611446	16	2.0	16	93	6	55	38	0	0	61	0.96
32611459--32611514	22	2.6	22	83	5	62	51	0	0	48	1.00
32611493--32611527	16	2.2	16	94	0	61	42	0	2	54	1.15
32611570--32611595	9	2.9	9	100	0	52	42	0	0	57	0.98
32620390--32620444	21	2.5	20	77	13	56	63	9	0	27	1.24
32620492--32620646	10	16.0	9	78	15	150	62	3	0	32	1.18
32620492--32620646	19	8.0	18	79	14	150	62	3	0	32	1.18
32620507--32620646	29	4.9	28	80	14	128	62	3	0	32	1.17
32621173--32621198	10	2.6	10	100	0	52	26	0	7	65	1.20
32621165--32621324	20	8.2	19	69	18	80	38	0	3	58	1.19
32621165--32621280	30	3.9	29	75	15	87	37	0	3	59	1.14
32621165--32621252	30	3.0	30	80	9	92	36	0	4	59	1.18
32621234--32621333	28	3.5	28	70	20	82	41	1	1	57	1.12
32636725--32636760	14	2.8	14	84	16	51	63	2	0	33	1.08
32637401--32637431	16	1.9	16	93	0	53	29	22	6	41	1.78
32638685--32638780	31	3.1	31	95	3	174	31	9	13	45	1.75
32639327--32639417	27	3.3	27	91	8	148	76	10	12	0	1.01
32639327--32639418	29	3.3	28	92	3	150	77	10	11	0	1.00
32639336--32639407	8	9.0	8	74	19	62	75	11	13	0	1.06
32642450--32642545	31	3.1	31	95	3	174	31	9	13	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32658614--32658710	48	2.0	49	91	2	160	42	20	22	14	1.88
32663900--32663930	11	2.7	11	95	5	53	9	12	12	64	1.50
32668096--32668125	15	2.0	15	93	0	51	23	20	26	30	1.98
32672271--32672440	86	2.0	86	94	0	295	29	24	21	24	1.99
32680533--32680564	16	2.0	16	93	0	55	40	6	9	43	1.62
32680884--32680964	26	3.2	26	68	28	82	22	13	29	34	1.92
32680770--32680964	51	3.9	51	78	9	204	24	16	27	31	1.96
32681188--32681219	16	2.0	16	93	0	55	59	0	15	25	1.36
32691133--32691166	18	1.9	18	94	5	61	17	26	47	8	1.77
32706305--32706342	19	2.0	19	85	10	51	21	42	0	36	1.53
32723280--32723511	33	6.6	35	69	23	132	20	19	27	32	1.97
32723270--32723453	76	2.4	76	92	2	309	22	19	26	32	1.97
32723313--32723451	43	3.5	41	74	18	150	22	17	25	33	1.96
32723354--32723556	103	2.0	103	94	0	352	20	19	28	32	1.97
32723438--32723491	27	2.0	27	82	3	65	20	24	27	27	1.99
32726677--32726846	71	2.4	71	79	5	209	24	14	29	31	1.95
32727951--32727997	24	2.0	23	91	4	76	61	8	0	29	1.25
32728895--32728927	17	2.0	17	88	5	50	36	0	0	63	0.95
32728902--32728950	18	2.8	18	84	3	55	40	0	2	57	1.10
32739905--32739934	15	2.1	15	93	6	53	30	6	40	23	1.80
32740826--32740854	11	2.5	12	88	11	51	6	10	13	68	1.37
32752050--32752108	30	2.0	29	83	9	75	47	6	3	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32753517--32753586	30	2.3	31	80	11	83	55	5	0	38	1.24
32753567--32753616	17	2.9	17	75	18	50	62	0	4	34	1.14
32756728--32756756	9	3.2	9	100	0	58	41	0	0	58	0.98
32758305--32758341	14	2.5	15	86	4	58	64	0	0	35	0.94
32758054--32760288	696	3.2	693	89	2	3340	29	15	12	42	1.84
32760398--32760449	17	3.1	17	81	10	63	50	3	11	34	1.57
32763631--32763712	40	2.0	40	100	0	164	32	19	9	37	1.85
32771933--32771960	12	2.3	12	100	0	56	50	0	0	50	1.00
32778990--32779629	320	2.0	320	100	0	1280	27	19	14	38	1.90
32781278--32781330	29	1.9	26	85	11	70	54	5	3	35	1.42
32782327--32782366	20	2.1	20	86	9	57	57	2	0	40	1.12
32782986--32783028	22	2.0	22	86	9	61	34	2	0	62	1.08
32783060--32783094	10	3.4	10	88	4	52	57	2	0	40	1.14
32783769--32783826	17	3.2	17	79	16	55	48	0	27	24	1.51
32784187--32784223	9	4.1	9	85	0	56	32	10	10	45	1.74
32784432--32784502	25	2.7	25	84	6	88	39	1	2	56	1.23
32784449--32784501	24	2.2	25	86	3	72	35	0	3	60	1.15
32785700--32785739	16	2.5	16	80	12	55	45	0	0	55	0.99
32785725--32785760	19	1.9	19	94	5	65	61	0	0	38	0.96
32786996--32787022	5	5.4	5	100	0	54	40	0	0	59	0.98
32788640--32788791	22	7.0	22	76	5	96	41	15	24	18	1.89
32789784--32789839	20	2.8	18	81	13	58	44	12	0	42	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32801669--32801967	149	2.0	149	96	0	544	29	17	15	37	1.91
32805647--32805719	33	2.2	32	81	9	85	28	5	10	54	1.57
32806105--32806144	17	2.3	18	86	4	55	42	0	5	52	1.23
32806863--32806896	6	5.8	6	93	3	52	79	0	20	0	0.73
32808397--32808666	127	2.1	125	88	4	400	29	15	21	32	1.94
32809979--32810222	30	8.2	30	87	1	348	27	0	25	45	1.59
32809979--32810222	89	2.7	90	91	1	375	27	0	25	45	1.59
32809979--32810222	59	4.1	60	89	1	348	27	0	25	45	1.59
32812063--32812096	15	2.3	15	90	5	52	67	5	0	26	1.13
32812194--32812250	29	2.0	29	93	6	98	59	1	0	38	1.08
32812285--32812335	22	2.3	21	83	9	66	33	0	33	33	1.58
32812340--32812395	22	2.5	23	85	11	80	46	0	25	28	1.53
32817174--32817224	19	2.8	17	82	14	57	17	0	3	78	0.90
32821471--32821503	6	5.7	6	85	7	50	30	3	0	66	1.06
32832232--32832264	3	11.0	3	100	0	66	66	33	0	0	0.92
32837782--32837816	18	1.9	18	88	0	52	28	17	11	42	1.83
32854561--32854614	23	2.4	22	75	22	58	24	7	5	62	1.42
32866871--32867095	40	5.7	40	86	5	296	24	22	28	25	2.00
32866871--32867128	119	2.2	119	81	6	292	25	21	27	25	1.99
32869878--32869902	7	3.6	7	100	0	50	60	0	0	40	0.97
32870257--32870312	16	3.4	16	72	13	51	71	1	5	21	1.15
32870706--32870759	24	2.2	24	87	6	74	50	5	3	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32875069--32875120	24	2.2	24	85	0	68	50	7	3	38	1.50
32876219--32876272	25	2.1	26	83	13	67	68	0	7	24	1.15
32877699--32877775	3	25.7	3	100	0	154	67	0	32	0	0.91
32877834--32877892	21	2.8	21	84	5	75	28	38	11	20	1.88
32880202--32880334	30	4.5	30	78	5	146	27	21	26	24	1.99
32880197--32880347	60	2.6	58	81	6	160	29	21	25	23	1.99
32880229--32880347	30	4.1	28	81	7	121	31	21	24	23	1.98
32880452--32880550	26	3.8	26	84	0	126	36	24	20	19	1.95
32880452--32880553	52	2.0	52	86	0	141	37	24	19	18	1.94
32880752--32881085	27	12.3	27	84	6	354	19	17	20	41	1.90
32880777--32881085	54	5.7	54	85	3	397	20	16	21	42	1.90
32880752--32881085	81	4.1	81	84	3	429	19	17	20	41	1.90
32883042--32883083	20	2.1	20	95	0	75	16	23	11	47	1.80
32886106--32886286	40	4.6	40	79	10	192	25	27	21	24	1.99
32886113--32886286	79	2.2	80	81	8	203	25	28	21	24	1.99
32894176--32894398	119	1.9	120	85	6	319	25	27	22	24	2.00
32894155--32894398	40	6.1	40	85	6	309	25	27	22	24	2.00
32907827--32907883	30	1.9	29	86	10	80	42	5	21	31	1.75
32908357--32908541	51	3.6	51	76	9	182	29	16	25	29	1.96
32910732--32910773	21	2.0	21	100	0	84	33	28	19	19	1.96
32917488--32917548	32	1.9	31	93	3	104	31	9	29	29	1.89
32918824--32919042	45	4.9	45	86	2	262	36	17	19	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32932938--32932989	24	2.2	24	89	0	77	55	9	1	32	1.43
32935144--32935329	40	4.7	40	88	5	252	24	22	27	26	2.00
32935144--32935362	80	2.7	79	82	7	230	25	21	27	25	1.99
32937400--32937451	24	2.2	24	89	0	77	55	9	1	32	1.43
32945600--32945635	18	1.9	19	88	5	56	38	13	0	47	1.44
32966485--32966605	50	2.4	50	90	0	179	28	23	25	23	2.00
32981196--32981244	25	2.0	24	84	11	64	59	2	30	8	1.38
32982274--32982313	20	2.0	20	85	9	55	5	35	5	55	1.44
32995667--32995745	27	2.9	27	86	0	86	31	21	13	32	1.93
32996789--32996842	27	2.0	27	96	0	99	20	25	12	40	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226