genome.fa.s24.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  178  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54369739--54369841	47	2.1	50	82	8	124	34	30	14	20	1.92
54374689--54374873	66	2.8	65	84	4	237	20	26	26	26	1.99
54386249--54386361	34	3.4	33	80	3	118	44	0	14	40	1.51
54387428--54387462	18	2.1	17	89	10	54	48	0	17	34	1.47
54388664--54389006	45	7.6	45	95	2	600	33	16	22	27	1.95
54388664--54389006	91	3.8	90	96	1	600	33	16	22	27	1.95
54388664--54389006	136	2.5	136	97	1	636	33	16	22	27	1.95
54389753--54389791	14	2.8	14	84	0	60	53	2	10	33	1.48
54389616--54390122	126	4.0	125	82	4	574	38	14	17	29	1.90
54389630--54390121	250	2.0	251	84	2	650	38	15	17	28	1.90
54391695--54392114	209	2.0	209	98	0	804	37	8	18	34	1.82
54392288--54392359	5	14.8	5	74	21	64	38	0	4	56	1.18
54392317--54392359	19	2.3	19	92	8	70	41	0	0	58	0.98
54392364--54392403	18	2.2	19	90	4	64	80	2	15	2	0.93
54393272--54393386	44	2.6	44	85	2	149	35	13	22	27	1.92
54393272--54393405	46	3.0	45	82	4	153	35	14	23	26	1.93
54395788--54395815	13	2.2	13	100	0	56	21	7	25	46	1.76
54397312--54397731	209	2.0	209	99	0	822	37	8	19	34	1.83
54397904--54397975	5	14.8	5	74	21	64	38	0	4	56	1.18
54397933--54397975	19	2.3	19	92	8	70	41	0	0	58	0.98
54397980--54398019	18	2.2	19	90	4	64	80	2	15	2	0.93
54398889--54399003	44	2.6	44	85	2	149	35	13	22	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54398889--54399022	46	3.0	45	82	4	153	35	14	23	26	1.93
54401233--54401287	19	2.9	19	71	15	51	38	16	3	41	1.66
54403738--54403793	19	2.9	19	70	15	53	37	19	3	39	1.69
54405678--54405742	27	2.4	27	94	0	112	41	20	7	30	1.80
54407320--54407365	5	9.2	5	90	0	74	34	0	4	60	1.16
54408514--54408599	21	4.0	22	85	8	115	16	19	24	39	1.91
54408513--54408599	44	2.0	41	86	6	120	17	19	24	39	1.92
54409737--54409767	16	1.9	16	93	0	53	48	6	0	45	1.28
54410006--54410050	24	2.0	23	82	8	56	26	20	28	24	1.99
54410981--54411038	28	2.1	28	100	0	116	50	3	3	43	1.36
54410981--54411029	16	3.3	16	67	21	52	51	4	4	40	1.40
54414626--54414659	3	11.3	3	100	0	68	67	0	32	0	0.91
54422653--54422698	24	1.9	24	100	0	92	34	21	13	30	1.91
54428097--54428154	23	2.4	24	80	5	64	65	3	6	24	1.33
54428138--54428186	18	2.5	20	77	16	57	63	8	2	26	1.34
54428145--54428178	18	1.9	17	94	5	59	67	8	0	23	1.18
54431270--54431300	15	2.1	15	100	0	62	32	19	19	29	1.96
54431786--54431814	8	3.6	8	100	0	58	75	0	0	24	0.80
54438381--54438444	23	2.6	26	82	7	73	50	26	1	21	1.58
54438790--54438909	61	2.0	61	83	3	152	37	18	5	39	1.73
54442409--54442462	25	2.1	26	83	10	67	3	12	3	79	1.00
54444055--54444170	46	2.6	46	93	4	193	27	24	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54446540--54446740	106	1.9	106	94	0	357	30	19	19	29	1.97
54447235--54447278	18	2.3	20	81	18	58	52	0	15	31	1.44
54447747--54447816	29	2.3	31	78	14	74	48	2	10	38	1.51
54448963--54449019	23	2.5	23	86	8	73	14	7	40	38	1.73
54449472--54450598	132	8.5	132	91	1	905	29	26	16	27	1.97
54449479--54450626	265	4.3	265	87	2	1165	29	26	16	27	1.97
54462017--54462219	107	1.9	108	93	1	354	31	19	19	29	1.97
54462724--54462767	18	2.3	20	81	18	58	52	0	15	31	1.44
54462721--54462769	18	2.7	18	79	17	57	48	0	16	34	1.46
54463238--54463307	29	2.3	31	78	14	74	48	2	10	38	1.51
54464460--54464516	23	2.5	23	86	8	73	14	7	40	38	1.73
54465008--54465098	34	2.7	35	79	5	105	41	14	1	42	1.52
54466843--54466889	17	2.8	16	79	17	51	76	0	4	19	0.95
54469735--54469794	30	1.9	32	86	6	88	43	0	36	20	1.52
54469898--54469958	30	2.0	31	90	3	97	36	0	44	19	1.51
54470007--54470043	9	4.1	9	89	0	56	29	10	10	48	1.72
54470097--54470127	9	3.4	9	90	0	53	38	22	12	25	1.90
54477762--54477797	4	9.0	4	100	0	72	75	0	0	25	0.81
54479149--54479201	23	2.4	22	76	20	56	9	18	1	69	1.25
54490761--54490817	25	2.4	23	77	11	69	40	14	0	45	1.44
54495742--54495776	18	1.9	18	100	0	70	34	28	20	17	1.95
54496010--54496035	9	2.9	9	100	0	52	11	34	19	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54498485--54498619	52	2.6	52	91	1	216	45	5	9	39	1.61
54498587--54498685	14	7.3	14	84	6	132	47	6	6	40	1.53
54498584--54498688	13	7.9	13	84	7	122	48	6	6	38	1.56
54498584--54498685	27	3.8	27	93	1	170	47	6	6	39	1.57
54500079--54500162	28	3.0	28	91	0	141	45	29	4	20	1.71
54502501--54502597	48	2.0	48	100	0	194	50	18	4	26	1.65
54512579--54512609	15	2.1	15	100	0	62	25	41	6	25	1.79
54513109--54513160	15	3.2	15	73	19	50	51	3	0	44	1.19
54514560--54514597	17	2.1	19	90	9	62	23	2	0	73	0.95
54527123--54527394	135	2.0	135	95	0	490	27	14	16	41	1.88
54534758--54534906	41	3.6	40	90	3	226	24	26	19	29	1.98
54543924--54543971	22	2.2	21	82	13	62	62	2	2	33	1.18
54545491--54545525	18	1.9	18	88	11	54	40	8	0	51	1.33
54546237--54546283	23	2.0	23	95	0	85	29	12	19	38	1.89
54547079--54547125	22	2.1	22	88	0	67	14	21	48	14	1.80
54557199--54557256	28	2.1	28	96	0	107	37	0	18	43	1.51
54557663--54557728	25	2.6	25	95	0	114	53	3	19	24	1.60
54560643--54560812	59	2.9	56	82	7	171	50	8	4	37	1.52
54592812--54592854	2	21.5	2	100	0	86	0	0	48	51	1.00
54596693--54596749	22	2.5	22	82	2	60	49	5	8	36	1.57
54596910--54596949	16	2.5	16	83	0	53	40	0	17	42	1.49
54596942--54596982	21	2.0	21	95	0	73	65	12	0	21	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54602111--54602164	22	2.5	22	75	0	54	57	11	14	16	1.65
54605948--54606002	21	2.6	21	91	0	92	21	9	40	29	1.84
54606082--54606146	32	2.0	32	100	0	130	43	3	12	41	1.58
54606088--54606140	16	3.3	16	75	19	65	47	1	13	37	1.54
54606296--54606347	22	2.3	22	77	9	52	50	5	1	42	1.37
54606946--54607189	30	8.2	30	94	0	422	38	9	0	51	1.40
54607235--54607325	45	2.0	44	89	6	139	9	50	3	36	1.52
54607259--54607325	14	4.5	15	74	18	52	11	47	1	38	1.50
54608381--54608444	29	2.2	30	83	8	78	48	0	3	48	1.17
54609970--54610000	15	2.1	14	94	5	53	29	0	6	64	1.18
54624073--54624164	9	10.2	9	87	9	107	41	27	10	20	1.86
54624073--54624144	26	2.7	26	85	10	101	40	26	11	22	1.87
54624236--54624324	39	2.3	39	82	2	115	19	3	28	49	1.64
54624303--54624332	13	2.3	13	94	0	51	20	0	40	40	1.52
54625567--54625624	26	2.1	28	84	9	75	51	3	37	6	1.46
54626315--54626369	23	2.5	22	78	18	69	16	20	20	43	1.88
54626432--54626470	16	2.4	16	86	0	60	43	2	30	23	1.67
54626663--54626692	15	2.0	15	93	0	51	36	13	26	23	1.92
54629347--54629782	114	3.8	114	94	0	719	31	19	24	25	1.98
54629350--54630144	228	3.6	228	73	11	797	31	18	24	25	1.97
54629694--54629874	92	2.0	93	94	1	319	34	19	22	23	1.97
54629580--54629988	206	2.0	207	94	1	723	32	18	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54629787--54630146	114	3.2	114	90	3	575	32	18	23	25	1.97
54629466--54630102	320	2.0	321	94	0	1107	32	18	23	25	1.97
54631281--54631523	83	2.9	82	85	7	285	31	16	20	31	1.95
54632975--54633025	24	2.2	23	89	3	75	45	3	5	45	1.46
54632995--54633280	28	9.8	28	69	22	139	41	4	6	46	1.50
54633095--54633143	22	2.2	23	88	3	73	48	4	4	42	1.40
54633125--54633175	22	2.4	22	75	18	54	47	0	1	50	1.12
54632951--54633305	119	3.0	119	93	3	587	40	4	7	47	1.53
54633051--54633234	57	3.1	57	68	18	169	40	5	7	46	1.55
54633145--54633369	69	3.4	69	70	20	215	41	5	6	46	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226