genome.fa.s24.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  152  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47602606--47602638	15	2.2	15	94	0	57	30	0	21	48	1.50
47606160--47606199	20	2.0	20	90	0	62	32	22	12	32	1.91
47614186--47614641	89	5.1	88	87	3	653	31	19	23	26	1.98
47614186--47614641	179	2.6	179	94	1	799	31	19	23	26	1.98
47616173--47616238	28	2.3	29	82	7	82	28	28	13	28	1.94
47616060--47616387	173	1.9	174	91	1	543	31	23	14	30	1.94
47616340--47616418	29	2.7	30	82	13	110	29	30	15	25	1.96
47617996--47618214	90	2.4	90	90	1	332	30	18	23	26	1.98
47618198--47618471	132	2.1	132	95	1	487	30	17	24	27	1.97
47618198--47618511	132	2.4	131	90	4	436	30	17	23	27	1.97
47620415--47620444	13	2.3	13	100	0	60	33	0	20	46	1.51
47620469--47620507	14	2.8	14	84	0	51	33	2	7	56	1.41
47620594--47620635	19	2.2	20	82	4	50	30	4	16	47	1.67
47621502--47621878	124	3.0	125	91	0	603	30	23	16	29	1.96
47622669--47622719	22	2.4	21	80	6	57	54	1	3	39	1.30
47627559--47627646	47	1.9	46	84	11	119	35	11	1	52	1.45
47634321--47634372	22	2.4	20	77	22	52	30	5	3	59	1.39
47638258--47638287	5	6.0	5	100	0	60	40	20	0	40	1.52
47642424--47642475	22	2.4	20	77	22	52	30	5	3	59	1.39
47644599--47644634	19	1.9	19	88	5	56	13	5	8	72	1.27
47647897--47647925	15	1.9	15	100	0	58	55	13	20	10	1.68
47656984--47657976	169	5.9	168	88	1	1391	28	18	27	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47657506--47657648	51	2.8	51	70	2	126	28	19	24	27	1.99
47659500--47659578	3	26.3	3	71	19	58	29	6	2	62	1.33
47662822--47662847	13	2.0	13	100	0	52	30	7	0	61	1.24
47665576--47665732	82	1.9	81	89	3	244	38	22	13	24	1.90
47666343--47666552	35	6.1	35	86	2	289	19	20	17	42	1.89
47666343--47666539	103	1.9	104	88	5	301	19	21	17	41	1.91
47666341--47666555	69	3.1	69	85	2	297	19	20	16	42	1.89
47669337--47669380	20	2.1	22	84	16	58	13	9	9	68	1.40
47687820--47687880	18	3.6	17	76	10	54	68	6	1	22	1.21
47688264--47688303	20	2.0	20	85	0	53	27	0	10	62	1.27
47690737--47690788	26	2.0	26	100	0	104	30	7	34	26	1.85
47691584--47691611	9	3.1	9	100	0	56	78	0	0	21	0.75
47691610--47691672	32	2.0	31	84	3	81	38	1	3	57	1.24
47693755--47693810	10	5.2	10	89	8	67	23	0	0	76	0.78
47693756--47693799	6	7.8	6	97	2	67	27	0	0	72	0.85
47693756--47693809	12	4.9	11	89	8	67	24	0	0	75	0.80
47698077--47698156	42	1.9	42	84	5	108	35	13	23	27	1.93
47699175--47699489	44	7.2	44	63	8	156	26	29	22	20	1.99
47699161--47699560	88	4.5	88	91	0	647	28	27	23	20	1.99
47699569--47699811	44	5.9	39	77	12	202	28	18	24	28	1.98
47699609--47699834	44	5.3	44	80	6	248	27	18	24	29	1.98
47699572--47699809	126	1.9	126	93	0	413	27	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47699655--47699811	82	1.9	82	92	0	260	28	17	26	28	1.97
47699906--47700066	45	3.6	45	77	4	148	29	18	22	28	1.98
47700500--47700691	58	3.3	58	96	1	341	31	17	24	26	1.97
47702103--47702139	16	2.4	16	83	16	51	21	0	0	78	0.75
47704052--47704107	29	1.9	29	85	7	78	42	10	12	33	1.77
47705348--47705567	122	1.9	119	85	7	315	27	9	16	46	1.77
47706899--47707047	69	2.2	69	91	0	235	49	17	7	25	1.72
47707157--47707605	162	2.8	158	78	8	412	32	13	16	36	1.88
47719053--47719108	26	2.2	26	80	6	60	50	14	10	25	1.75
47720908--47720947	21	1.9	21	84	0	53	22	20	35	22	1.96
47727477--47727510	6	5.7	6	100	0	68	70	0	14	14	1.17
47727654--47727712	26	2.3	26	88	5	84	40	11	11	35	1.79
47728440--47728495	28	2.0	28	100	0	112	53	10	10	25	1.67
47730392--47730439	12	3.9	12	76	13	53	39	4	0	56	1.19
47730395--47730500	39	2.7	39	79	2	115	40	9	0	49	1.42
47730615--47730692	39	1.9	40	87	10	113	32	6	7	53	1.55
47731225--47731637	109	3.8	109	86	2	548	31	17	17	34	1.93
47735541--47735620	23	3.5	23	86	5	92	82	2	15	0	0.77
47735552--47735626	5	15.8	5	77	14	63	80	1	18	0	0.79
47735544--47735620	18	4.2	17	75	11	64	81	2	15	0	0.79
47735539--47735630	13	7.5	13	73	17	81	81	2	16	0	0.79
47735558--47735630	18	3.9	18	85	8	94	80	1	17	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47735911--47736198	97	3.0	97	92	1	452	27	16	8	46	1.76
47737048--47737410	86	4.2	86	82	4	354	29	20	23	26	1.99
47737413--47737498	45	2.0	44	81	9	104	38	13	20	26	1.91
47737577--47737666	44	2.0	44	95	0	162	33	15	21	30	1.94
47737577--47737697	44	2.8	44	86	5	147	31	18	19	31	1.95
47737694--47737960	147	1.8	147	88	0	408	31	15	22	30	1.95
47737688--47737991	147	2.1	147	84	1	394	30	16	22	30	1.96
47737703--47738036	147	2.3	146	80	4	359	31	15	21	31	1.94
47738148--47738300	44	3.5	44	75	5	139	29	16	23	30	1.96
47739916--47740046	41	3.2	40	73	9	113	38	8	2	50	1.45
47740750--47741164	109	3.8	108	89	1	582	32	16	18	33	1.93
47743473--47743600	62	2.1	61	88	4	186	50	21	14	14	1.78
47744862--47744919	29	2.0	29	96	0	107	20	25	3	50	1.64
47746415--47746465	24	2.1	25	81	3	59	50	0	7	41	1.31
47751559--47751610	19	2.5	20	84	12	61	38	0	3	57	1.17
47754479--47754529	26	2.0	26	96	0	93	11	23	35	29	1.90
47754400--47754666	104	2.6	104	91	3	439	18	20	30	29	1.97
47756789--47756817	14	2.1	14	100	0	58	51	6	41	0	1.28
47761887--47762137	102	2.5	103	92	5	422	19	21	29	29	1.98
47767305--47767390	45	1.9	45	95	0	154	18	15	30	36	1.92
47767988--47768064	37	2.1	37	100	0	154	27	19	12	40	1.88
47768842--47768866	5	5.0	5	100	0	50	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47771630--47771669	19	2.1	19	86	9	55	20	5	12	62	1.48
47771525--47771689	86	1.9	86	97	0	312	33	6	12	47	1.65
47777151--47777221	3	23.7	3	100	0	142	67	0	0	32	0.91
47777770--47777828	29	2.0	31	83	6	77	50	8	13	27	1.70
47782796--47782861	27	2.4	27	79	0	78	31	22	15	30	1.95
47791041--47791077	18	2.1	18	100	0	74	37	16	16	29	1.90
47797633--47797820	50	3.8	48	71	16	150	22	27	16	33	1.95
47805402--47805450	21	2.3	21	92	0	80	38	20	16	24	1.92
47808251--47808287	17	2.2	17	100	0	74	37	0	13	48	1.43
47809776--47809814	5	7.8	5	100	0	78	17	0	0	82	0.68
47810349--47810387	20	2.0	19	85	5	51	5	23	0	71	1.05
47812841--47812872	12	2.7	12	100	0	64	53	6	0	40	1.26
47812875--47812934	22	2.8	22	80	5	61	53	0	0	46	1.00
47812872--47812940	20	3.3	20	73	23	54	55	0	0	44	0.99
47818272--47818302	15	2.1	15	100	0	62	41	0	19	38	1.51
47820235--47820395	58	2.8	58	98	0	304	45	14	6	33	1.70
47846397--47846531	40	3.4	39	77	5	119	37	22	23	16	1.94
47846560--47846796	41	5.8	41	79	4	237	17	24	24	33	1.96
47846560--47846796	123	1.9	123	81	3	280	17	24	24	33	1.96
47846558--47846757	82	2.4	81	91	3	328	17	25	24	33	1.96
47847310--47847344	15	2.3	15	85	0	52	22	0	37	40	1.55
47849501--47849531	10	3.1	10	90	0	53	38	0	12	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47851965--47852017	21	2.5	21	87	9	81	37	3	1	56	1.28
47852061--47852187	40	3.1	37	70	22	110	50	16	0	32	1.51
47852090--47852230	32	4.4	31	69	22	103	48	14	1	34	1.53
47852060--47852263	48	4.2	46	77	14	198	49	14	0	35	1.51
47852090--47852338	97	2.5	97	89	6	362	48	15	0	34	1.51
47852175--47852346	12	14.3	12	72	17	101	49	15	0	34	1.49
47852173--47852239	21	3.0	21	72	18	64	47	14	1	35	1.54
47852285--47852754	16	27.5	17	67	17	185	48	19	1	29	1.60
47852258--47852753	9	57.2	9	70	16	232	49	19	1	29	1.59
47852258--47852753	50	10.0	50	72	12	330	49	19	1	29	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226