genome.fa.s24.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  184  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55836180--55836283	44	2.4	44	87	6	149	29	17	20	32	1.95
55837889--55837913	11	2.3	11	100	0	50	32	16	0	52	1.44
55844684--55844835	40	3.8	40	74	4	119	30	20	20	28	1.97
55844664--55844837	80	2.2	80	79	3	181	33	20	20	25	1.97
55844875--55844982	40	2.7	40	79	2	128	30	21	24	24	1.99
55844744--55845142	145	2.7	145	81	2	453	33	18	22	25	1.97
55845223--55845267	14	3.2	14	80	0	54	24	0	22	53	1.46
55845302--55845345	14	3.1	14	78	12	54	18	0	27	54	1.44
55845616--55845737	7	17.4	7	76	3	111	18	0	33	46	1.55
55845570--55845737	21	8.1	20	72	9	106	20	1	30	47	1.58
55845604--55845733	48	2.7	46	77	9	134	20	0	32	46	1.56
55845653--55845735	36	2.4	34	84	8	96	21	1	31	45	1.60
55848094--55848182	9	9.9	9	72	9	74	42	16	2	38	1.61
55848216--55848256	21	2.0	21	85	9	57	46	14	0	39	1.45
55850095--55850204	43	2.5	42	89	5	175	25	18	25	30	1.98
55852698--55852747	19	2.6	19	84	12	66	66	2	2	30	1.14
55852906--55852947	22	1.9	22	85	0	57	61	2	9	26	1.39
55853492--55853583	39	2.4	39	87	3	141	35	2	1	60	1.16
55853554--55853593	21	1.9	21	89	0	62	37	2	0	60	1.11
55853553--55853600	21	2.2	20	79	13	51	33	2	4	60	1.27
55853693--55853814	63	1.9	64	83	1	156	35	7	4	52	1.51
55856059--55856099	21	1.9	22	85	5	57	24	9	21	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55856288--55856430	52	2.9	52	88	6	208	24	8	21	45	1.79
55856324--55856621	116	2.6	116	97	0	560	26	9	20	42	1.83
55861255--55861448	92	2.1	92	87	5	277	45	4	4	46	1.41
55861391--55861438	26	1.9	25	84	16	64	45	0	2	52	1.12
55861488--55861532	18	2.4	18	92	3	72	53	2	0	44	1.13
55861511--55861596	15	5.7	15	69	28	67	45	0	1	53	1.07
55861493--55861593	18	6.5	16	71	25	83	46	0	0	52	1.07
55861494--55861728	59	3.9	59	76	12	246	45	1	3	49	1.28
55861677--55861711	18	2.0	17	88	5	52	45	0	0	54	0.99
55861677--55861731	15	3.4	16	80	16	53	47	0	1	50	1.11
55861876--55861966	45	2.0	44	85	2	119	37	28	4	29	1.77
55861947--55861982	16	2.2	16	100	0	72	38	36	0	25	1.56
55865230--55865349	63	1.9	63	84	1	161	35	6	5	53	1.49
55868076--55868125	15	3.4	15	68	15	50	48	26	16	10	1.77
55868062--55868126	29	2.2	29	97	0	121	46	26	15	12	1.81
55868871--55868980	43	2.6	43	86	2	150	29	31	16	22	1.96
55871359--55871393	6	5.8	6	87	12	54	82	0	0	17	0.66
55871644--55871669	11	2.4	11	100	0	52	84	7	7	0	0.77
55873242--55873289	24	2.0	24	95	0	87	22	16	39	20	1.92
55876928--55877232	107	2.9	107	89	4	451	35	11	12	40	1.79
55878083--55878245	89	1.8	89	89	2	256	42	30	1	24	1.65
55878073--55878275	89	2.4	84	81	8	223	43	31	1	23	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55882193--55882220	14	2.0	14	100	0	56	35	14	14	35	1.86
55886226--55886278	24	2.3	25	75	15	60	52	7	5	33	1.53
55887207--55887276	31	2.3	31	85	5	88	48	17	18	15	1.81
55890898--55890940	21	2.0	21	86	8	61	60	2	0	37	1.10
55897030--55897096	26	2.6	24	81	6	71	40	20	20	17	1.92
55897030--55897103	25	2.9	26	82	6	80	39	21	20	18	1.93
55897888--55897954	26	2.6	24	81	6	71	40	20	20	17	1.92
55897888--55897961	25	2.9	26	82	6	80	39	21	20	18	1.93
55896408--55898480	858	2.4	858	96	0	3812	29	21	17	30	1.96
55898672--55898743	26	2.8	25	83	8	83	19	23	19	37	1.94
55901775--55901807	6	5.7	6	92	7	59	84	0	0	15	0.61
55909092--55909131	20	2.0	20	85	0	53	42	20	25	12	1.86
55911000--55911039	21	2.0	21	90	5	64	50	5	12	32	1.62
55917926--55917982	24	2.4	24	88	5	80	49	8	5	36	1.57
55918980--55919007	13	2.2	13	100	0	56	21	0	14	64	1.29
55926495--55926656	58	2.8	58	80	7	195	52	4	1	41	1.31
55933143--55933278	66	2.1	66	92	0	227	40	17	27	14	1.89
55933625--55933762	42	3.3	43	93	2	226	26	18	26	28	1.98
55936311--55936343	17	1.9	17	93	0	57	0	0	9	90	0.44
55947131--55947167	17	2.1	18	90	5	58	43	5	5	45	1.49
55947475--55947518	20	2.1	22	83	8	56	18	4	13	63	1.46
55952483--55952526	10	3.5	13	79	20	58	72	0	11	15	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55953782--55955107	100	13.3	99	85	1	1666	33	21	20	24	1.97
55953782--55955107	50	26.5	50	71	5	879	33	21	20	24	1.97
55956752--55956785	17	2.1	16	88	5	50	44	5	8	41	1.60
55960526--55960558	10	3.1	11	86	8	50	51	0	0	48	1.00
55961134--55961212	29	2.7	28	80	11	88	46	13	12	26	1.79
55961162--55961223	29	2.1	29	81	0	70	56	11	9	22	1.63
55961879--55962075	43	4.6	42	79	6	166	22	16	22	38	1.93
55963204--55963246	21	2.0	21	82	8	52	11	34	25	27	1.91
55966661--55966749	46	1.9	46	86	0	124	39	19	7	33	1.80
55981197--55981445	50	4.8	50	85	4	284	20	29	24	26	1.99
55981196--55981445	100	2.4	104	88	6	357	20	29	24	26	1.99
55981540--55981571	13	2.5	13	94	0	55	56	12	0	31	1.37
55981780--55981867	40	2.2	41	91	2	142	0	28	9	62	1.25
55981893--55981963	5	14.8	5	85	14	105	60	0	0	39	0.97
55981884--55981963	15	5.8	13	87	9	99	60	0	0	40	0.97
55981884--55981972	13	6.5	13	83	8	81	60	1	0	38	1.04
55985082--55985138	16	3.8	14	76	19	53	71	0	1	26	0.95
55985063--55985122	33	1.9	30	83	10	75	65	1	1	31	1.13
55985108--55985138	8	4.0	8	95	4	55	77	0	0	22	0.77
55998103--55998157	27	2.0	27	100	0	110	41	7	7	43	1.60
56001241--56001274	18	1.9	17	88	5	50	70	2	2	23	1.15
56001307--56001339	12	2.8	12	90	0	57	66	0	3	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56001300--56001352	12	4.3	12	80	2	52	67	1	5	24	1.22
56002749--56003159	173	2.4	173	88	1	583	26	23	19	30	1.98
56002836--56003118	85	3.3	85	65	12	207	27	23	18	29	1.98
56002749--56003142	44	9.1	43	66	12	148	26	23	19	30	1.98
56003193--56003463	45	5.8	45	82	6	335	29	23	18	28	1.98
56003202--56003481	96	3.0	95	86	3	363	28	24	18	28	1.98
56008055--56008113	30	2.0	30	96	0	109	47	27	10	15	1.77
56011758--56011805	24	2.0	24	83	0	60	8	25	22	43	1.81
56014598--56014657	27	2.2	27	93	0	102	40	13	18	28	1.88
56015809--56015842	18	1.9	17	88	5	50	70	2	2	23	1.15
56015875--56015907	12	2.8	12	90	0	57	66	0	3	30	1.06
56015868--56015919	12	4.3	12	80	4	52	67	1	5	25	1.23
56019482--56019645	30	5.5	30	93	2	278	42	19	8	29	1.81
56019486--56019645	59	2.7	59	96	0	284	42	20	8	28	1.81
56021042--56021138	3	32.7	3	69	10	56	29	5	3	61	1.33
56021180--56021235	30	1.9	30	85	3	78	28	12	5	53	1.60
56023271--56023308	20	1.9	20	94	0	67	55	5	23	15	1.61
56024639--56024666	10	2.8	10	100	0	56	21	17	0	60	1.36
56025379--56025412	5	6.6	5	96	3	59	79	2	0	17	0.86
56027247--56027381	42	3.2	42	62	19	98	28	24	22	24	1.99
56027102--56027856	86	8.9	86	88	4	1050	28	23	23	24	1.99
56027113--56027856	335	2.2	342	87	5	1069	28	23	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56029425--56029518	3	31.7	3	68	10	50	29	5	3	61	1.33
56029450--56029518	12	5.8	12	75	3	68	28	7	2	60	1.38
56029564--56029619	30	1.9	30	85	3	78	28	12	5	53	1.60
56029653--56029684	16	2.0	16	100	0	64	43	6	0	50	1.27
56029657--56029699	18	2.4	18	88	0	59	44	11	0	44	1.40
56033273--56033425	44	3.3	44	68	10	117	26	16	22	33	1.95
56033263--56033476	94	2.3	94	90	0	329	27	17	21	33	1.96
56033294--56033521	94	2.4	93	83	5	253	29	17	22	31	1.96
56033355--56033652	139	2.2	138	84	1	373	32	17	19	30	1.95
56033389--56033702	139	2.3	138	80	3	344	33	17	19	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226