genome.fa.s24.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  220  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65792360--65792392	7	4.7	7	92	0	57	42	15	18	24	1.88
65796796--65796829	13	2.7	13	95	4	61	55	0	29	14	1.40
65798818--65799067	69	3.7	67	82	2	257	37	14	23	24	1.92
65799217--65799264	20	2.4	20	82	6	53	41	4	2	52	1.32
65799268--65799306	19	2.1	19	100	0	78	25	5	5	64	1.35
65800117--65800153	17	2.2	18	85	9	51	0	29	2	67	1.04
65805245--65805286	16	2.5	17	76	11	50	50	0	2	47	1.14
65811582--65811688	55	1.9	55	90	0	169	23	6	38	31	1.80
65825498--65825531	17	2.0	17	88	0	50	64	0	5	29	1.17
65840371--65840421	26	2.0	26	100	0	102	35	11	31	21	1.90
65851363--65851388	2	13.0	2	100	0	52	0	50	0	50	1.00
65851471--65851516	4	11.8	4	95	4	85	23	0	0	76	0.79
65863969--65864007	21	1.9	21	84	5	53	51	20	5	23	1.67
65865344--65865442	10	9.7	10	71	15	69	71	0	28	0	0.86
65865346--65865448	42	2.4	42	82	9	111	71	0	28	0	0.86
65865454--65865486	18	1.9	17	88	11	50	24	0	6	69	1.10
65865933--65866535	153	4.1	145	79	13	581	52	7	10	29	1.64
65865784--65866534	294	2.5	296	85	8	939	52	7	10	29	1.63
65870901--65870978	24	3.2	24	76	7	77	56	10	3	29	1.50
65875337--65875375	19	2.1	19	100	0	78	23	41	5	30	1.76
65876551--65876705	84	1.8	84	86	5	224	29	14	16	40	1.87
65881775--65881852	22	3.4	22	67	16	68	28	10	6	55	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65881776--65881864	47	1.9	47	95	2	162	29	8	4	57	1.49
65886237--65886305	9	7.7	9	74	9	52	63	1	4	30	1.22
65886291--65886340	25	2.0	25	84	4	64	66	2	2	30	1.14
65894538--65894564	12	2.2	12	100	0	54	70	0	0	29	0.88
65894535--65894566	7	4.9	7	85	14	50	71	0	0	28	0.86
65895352--65895382	13	2.4	13	100	0	62	58	12	0	29	1.35
65895365--65895412	23	2.1	22	92	3	78	62	8	4	25	1.41
65895950--65896267	169	1.9	169	86	3	453	26	11	18	43	1.84
65897401--65897438	3	12.7	3	88	0	58	34	60	0	5	1.19
65897395--65897438	12	3.7	12	90	0	70	34	56	0	9	1.31
65897395--65897448	9	6.3	9	79	12	51	33	53	0	12	1.39
65913623--65913686	30	2.1	30	85	5	85	59	6	9	25	1.52
65914238--65914280	22	1.9	23	85	4	61	44	4	0	51	1.22
65914863--65914899	19	1.9	19	94	0	65	43	16	5	35	1.71
65921022--65921198	64	2.8	64	87	10	249	31	8	17	42	1.79
65921317--65921598	41	6.9	41	92	2	424	19	19	29	32	1.96
65937003--65937039	2	18.5	2	100	0	74	51	0	48	0	1.00
65937337--65937557	85	2.6	84	84	5	284	41	10	16	31	1.82
65948930--65948972	13	3.1	14	80	10	52	39	0	2	58	1.11
65951464--65951504	15	2.7	16	85	11	59	14	0	2	82	0.76
65951465--65951504	20	2.0	21	90	5	64	15	0	2	82	0.77
65951618--65951669	25	2.1	25	82	7	61	32	5	9	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65953523--65953562	21	1.9	21	94	0	71	55	5	12	27	1.58
65954700--65954735	18	2.0	18	88	0	54	27	0	5	66	1.13
65957087--65957121	3	11.7	3	87	0	52	31	34	2	31	1.73
65962858--65962972	40	2.9	39	84	5	151	36	19	20	23	1.95
65963024--65963263	41	5.9	41	91	0	372	17	22	30	30	1.97
65963357--65963479	38	3.2	36	68	22	97	19	43	3	34	1.67
65968859--65968998	43	3.3	43	84	4	140	22	17	27	32	1.96
65970753--65970786	16	2.1	16	88	0	50	20	5	0	73	1.04
65970916--65970960	23	2.0	23	82	8	56	40	11	2	46	1.52
65977953--65978117	90	1.9	88	92	2	276	40	26	11	21	1.87
65979837--65979861	7	3.6	7	100	0	50	12	0	0	88	0.53
66000012--66000050	19	2.0	20	85	5	53	46	7	0	46	1.31
65999964--66000140	91	1.9	91	88	0	264	40	7	7	44	1.60
66002291--66002332	22	1.9	22	85	9	59	4	4	19	71	1.22
66007327--66007359	14	2.3	15	94	5	59	12	0	12	75	1.04
66023812--66024487	300	2.3	294	86	4	936	28	11	20	39	1.87
66024882--66025201	159	2.0	158	86	3	385	31	11	23	33	1.90
66029071--66029120	14	3.6	14	77	0	55	40	2	6	52	1.38
66035963--66035989	5	5.4	5	100	0	54	62	0	0	37	0.95
66047329--66048001	239	2.8	235	79	7	703	38	24	12	24	1.90
66049332--66049393	32	1.9	33	83	6	83	53	0	8	38	1.31
66049977--66050050	37	2.0	37	92	5	123	31	9	27	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66051250--66051293	24	1.9	24	90	9	74	36	0	2	61	1.09
66051327--66051359	3	11.0	3	100	0	66	66	0	0	33	0.92
66051402--66051429	9	3.1	9	100	0	56	57	10	0	32	1.33
66051372--66051572	59	3.1	68	83	13	289	46	9	3	40	1.55
66051561--66051602	16	2.6	16	88	0	57	45	7	2	45	1.44
66051576--66051625	22	2.3	22	89	0	73	46	2	2	50	1.24
66051599--66051630	17	1.9	17	93	6	57	56	0	0	43	0.99
66052506--66052554	24	2.0	25	88	11	75	22	6	14	57	1.59
66054425--66054452	14	2.0	14	100	0	56	42	0	0	57	0.99
66055803--66055845	19	2.2	20	91	4	70	62	0	2	34	1.08
66055778--66055887	30	3.5	31	78	5	87	60	0	2	36	1.18
66055802--66055856	19	2.6	21	80	16	69	65	0	1	32	1.03
66058363--66058410	20	2.5	18	83	12	60	72	2	0	25	0.95
66059202--66059256	28	1.9	29	85	3	76	16	1	5	76	1.06
66064950--66064996	17	2.6	18	83	16	62	59	6	0	34	1.23
66069157--66069207	25	2.0	25	88	7	77	25	0	3	70	1.04
66070562--66070589	14	2.0	14	100	0	56	71	14	0	14	1.15
66073879--66073937	27	2.1	28	87	3	84	32	0	3	64	1.10
66074396--66074451	29	1.9	29	85	0	76	28	14	19	37	1.91
66074667--66074736	22	3.2	22	91	0	113	32	30	0	37	1.58
66074708--66074766	30	2.0	30	96	0	109	32	35	0	32	1.58
66074686--66074788	52	2.0	51	84	5	136	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66074738--66074779	22	1.9	22	90	0	66	33	33	0	33	1.58
66074820--66074885	30	2.2	31	86	2	89	34	0	1	63	1.04
66074978--66075022	22	2.0	23	86	4	65	28	0	6	64	1.19
66078251--66078517	125	2.1	124	85	2	356	31	21	15	31	1.95
66085363--66085387	13	1.9	13	100	0	50	84	0	0	16	0.63
66085358--66085437	41	1.9	42	92	2	135	63	0	1	35	1.02
66088810--66088949	40	3.5	40	78	6	142	29	23	19	27	1.98
66088815--66088950	41	3.5	40	77	7	134	30	24	18	26	1.98
66090385--66090499	8	12.8	8	70	20	68	64	2	2	30	1.21
66090388--66090497	9	11.8	10	67	20	53	64	2	2	30	1.21
66090385--66090468	19	4.6	18	74	12	82	61	3	1	33	1.20
66090385--66090499	18	6.4	17	72	18	74	64	2	2	30	1.21
66091841--66091918	37	2.0	40	87	7	117	66	0	1	32	1.00
66091860--66091918	29	2.0	29	81	12	68	67	0	1	30	1.00
66095063--66095096	13	2.8	12	86	8	50	82	2	14	0	0.79
66095298--66095364	33	2.0	33	94	0	116	13	44	2	38	1.59
66095375--66095404	14	2.1	14	93	0	51	10	43	10	36	1.72
66097027--66097069	13	3.3	13	81	9	52	74	2	23	0	0.93
66097027--66097070	23	2.0	22	86	4	61	75	2	22	0	0.92
66097217--66097245	9	3.2	9	100	0	58	34	0	20	44	1.52
66097408--66097445	20	1.9	20	84	10	51	57	0	10	31	1.32
66097751--66097799	25	2.0	25	83	0	62	38	0	16	44	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66103496--66103573	32	2.5	31	88	10	115	43	2	5	48	1.38
66103496--66103576	31	2.6	31	84	11	112	43	2	4	49	1.37
66106205--66106234	10	2.8	11	95	5	53	30	0	0	70	0.88
66115747--66115791	16	2.8	16	79	0	54	40	15	17	26	1.90
66117919--66117958	21	2.0	20	85	14	55	57	12	0	30	1.36
66120340--66120366	13	2.1	13	100	0	54	29	7	37	25	1.83
66120380--66120419	16	2.6	16	84	4	55	62	0	0	37	0.95
66120413--66120483	30	2.4	31	76	11	76	47	5	1	45	1.35
66123291--66123370	31	2.6	32	78	13	94	37	10	7	45	1.66
66123346--66123423	41	1.9	41	86	0	111	37	19	7	35	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226