genome.fa.s24.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  100  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30923211--30923380	90	1.9	91	92	3	290	44	11	6	37	1.67
30926453--30926668	91	2.4	91	92	1	353	46	2	3	46	1.35
30926453--30926693	47	5.3	47	73	15	209	46	2	3	47	1.34
30926676--30926709	17	2.0	17	88	11	52	44	2	0	52	1.16
30926914--30926948	18	2.0	17	88	5	52	45	0	0	54	0.99
30927034--30927068	18	2.0	17	88	5	52	45	0	0	54	0.99
30926675--30927090	120	3.5	120	96	2	741	43	2	5	48	1.38
30927361--30927413	18	2.9	19	83	5	65	28	7	15	49	1.71
30929079--30929105	3	9.0	3	100	0	54	66	0	33	0	0.92
30929710--30929766	17	3.5	17	66	9	55	49	8	1	40	1.44
30929704--30929773	32	2.4	30	86	13	94	47	7	4	41	1.50
30930816--30930892	14	5.0	15	71	20	52	42	14	9	33	1.77
30930832--30930871	20	2.0	20	90	0	62	50	12	10	27	1.72
30930820--30930886	34	1.9	35	90	3	109	46	13	8	31	1.74
30934172--30934198	12	2.2	12	100	0	54	48	7	0	44	1.31
30934685--30934720	14	2.6	14	95	0	63	33	11	50	5	1.61
30938270--30938351	43	1.9	43	94	0	146	42	14	9	32	1.79
30938600--30938651	24	2.1	24	85	3	68	36	25	26	11	1.90
30941069--30941125	28	2.0	28	100	0	114	29	21	24	24	1.99
30941714--30941764	22	2.3	23	83	10	61	35	1	5	56	1.35
30949458--30949499	18	2.5	16	82	17	50	42	4	2	50	1.36
30950984--30951032	14	3.3	15	78	18	50	61	2	0	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30951692--30951735	17	2.8	16	82	6	54	65	2	0	31	1.05
30951683--30951731	23	2.1	24	85	11	66	65	2	0	32	1.04
30951683--30951729	24	2.0	24	87	8	69	65	2	0	31	1.04
30954487--30954657	43	4.0	43	86	1	227	33	19	21	25	1.97
30954488--30954658	86	2.0	87	91	2	283	33	19	21	25	1.97
30954611--30954717	57	1.9	56	86	5	153	29	16	27	26	1.97
30954669--30954765	42	2.3	43	85	7	135	27	21	26	23	1.99
30954568--30954759	99	1.9	99	84	6	255	29	19	25	26	1.98
30955212--30955259	21	2.3	21	92	0	78	2	41	18	37	1.63
30961669--30961907	41	5.8	41	76	3	223	35	23	24	17	1.95
30961708--30961907	82	2.4	82	86	0	274	35	24	24	16	1.95
30961669--30961906	123	1.9	123	82	3	291	35	23	23	17	1.95
30962658--30962870	114	1.9	113	86	4	304	23	23	26	25	2.00
30962766--30962931	73	2.3	74	93	3	282	22	24	25	26	2.00
30964512--30964617	50	2.1	49	82	5	124	33	2	4	59	1.33
30966231--30966270	3	13.3	3	83	0	53	62	0	5	32	1.17
30971622--30971651	15	2.1	15	93	6	53	6	13	0	80	0.91
30972435--30972479	18	2.6	18	83	16	51	26	2	2	68	1.12
30972452--30972479	3	9.3	3	100	0	56	32	0	0	67	0.91
30976663--30976712	9	5.6	9	90	9	84	76	12	0	12	1.04
30976663--30976712	17	2.8	17	93	6	82	76	12	0	12	1.04
30977676--30977722	21	2.2	21	92	0	76	27	10	36	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30978778--30979361	46	12.7	46	89	0	873	27	16	26	29	1.97
30979372--30980736	132	10.3	132	93	0	2237	32	18	23	26	1.97
30979869--30980469	44	13.7	43	67	12	265	31	18	23	26	1.98
30987097--30987143	24	2.0	24	87	8	69	38	36	6	19	1.77
30993340--30993426	25	3.5	25	90	0	129	32	24	20	22	1.98
30993340--30993465	25	5.0	25	83	0	108	34	20	21	23	1.97
30996354--30996400	17	2.7	18	76	6	51	53	2	4	40	1.32
30997210--30997670	140	3.3	139	83	3	540	34	20	9	36	1.84
30997746--30997790	22	2.1	22	87	4	65	66	4	0	28	1.11
31001499--31001954	81	5.7	77	76	13	231	47	13	11	28	1.77
31001579--31001954	81	4.6	81	85	2	430	47	13	11	27	1.78
31001580--31001955	162	2.3	164	86	3	506	47	13	11	27	1.78
31001888--31002150	87	3.0	87	78	10	277	44	10	13	32	1.77
31001909--31002147	88	2.7	86	82	5	250	45	9	13	31	1.76
31002243--31002293	22	2.3	22	80	6	59	66	1	0	31	1.03
31002735--31002775	20	2.0	20	85	0	55	51	7	9	31	1.62
31005188--31005286	25	4.0	25	81	0	108	21	29	15	34	1.94
31017451--31017703	69	3.7	68	78	7	235	34	14	20	30	1.92
31024904--31024928	13	1.9	13	100	0	50	40	16	16	28	1.89
31028406--31028496	25	3.8	25	81	8	107	17	21	19	40	1.91
31033013--31033038	6	4.3	6	100	0	52	65	19	15	0	1.27
31034078--31034110	16	2.0	17	94	5	59	24	0	3	72	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31041724--31041773	20	2.6	20	87	6	68	68	0	4	28	1.08
31041726--31041774	12	3.9	12	82	10	62	67	0	2	30	1.02
31045183--31045226	22	2.0	22	90	0	70	34	2	15	47	1.58
31048949--31048993	22	2.0	22	91	0	72	33	2	15	48	1.57
31049203--31049522	174	1.8	179	86	3	470	22	15	15	46	1.84
31053286--31053383	48	2.0	48	100	0	196	29	12	14	43	1.81
31074470--31074504	18	1.9	18	100	0	70	34	0	25	40	1.56
31079699--31079728	16	1.9	16	93	6	53	30	0	20	50	1.49
31082142--31082178	11	2.9	13	88	11	51	64	0	0	35	0.94
31082640--31082755	61	2.0	61	87	5	175	41	5	4	49	1.45
31082642--31082776	58	2.3	60	83	8	161	41	5	5	47	1.50
31083191--31083238	17	2.9	17	90	3	71	27	0	18	54	1.44
31084463--31084641	46	3.9	46	86	1	216	37	10	24	27	1.87
31084463--31084640	92	1.9	92	87	0	257	38	9	24	28	1.86
31091875--31091905	3	10.3	3	100	0	62	67	0	32	0	0.91
31098314--31098501	48	3.9	48	84	2	234	22	30	20	26	1.98
31105274--31105312	3	13.0	3	100	0	78	33	0	0	66	0.92
31105418--31105452	14	2.5	14	90	0	52	48	0	14	37	1.44
31105624--31105692	21	3.5	20	76	9	61	34	7	4	53	1.48
31107518--31107614	49	2.0	49	93	0	167	42	7	26	23	1.80
31132130--31132184	21	2.6	21	78	18	60	20	23	32	23	1.98
31133391--31133800	205	2.0	204	94	0	712	35	21	6	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31134561--31134614	22	2.3	24	84	9	76	37	11	1	50	1.49
31138794--31138842	20	2.5	19	87	9	64	32	8	16	42	1.77
31147019--31147111	47	2.0	47	97	0	177	26	32	5	35	1.79
31166709--31166734	13	2.0	13	100	0	52	46	23	15	15	1.83
31175281--31175351	30	2.4	30	97	0	133	15	36	26	21	1.93
31179462--31179534	29	2.6	28	75	10	69	23	19	21	35	1.96
31179728--31179846	53	2.2	53	79	2	132	24	24	14	36	1.92
31181176--31181237	28	2.2	28	83	11	74	69	3	3	24	1.18
31181456--31181493	16	2.5	15	84	16	51	47	0	2	50	1.15
31181629--31181662	17	2.0	17	88	0	50	50	2	0	47	1.16
31181777--31182106	87	3.7	87	83	9	382	37	20	9	33	1.84
31182255--31182327	30	2.5	30	80	10	87	58	0	5	35	1.21
31182341--31182383	20	2.2	20	86	0	59	67	0	6	25	1.15
31182368--31182409	10	4.2	10	84	0	57	64	0	4	30	1.14
31182502--31182531	11	2.7	11	94	0	51	30	3	0	66	1.07
31182696--31182738	21	2.0	21	86	4	59	32	2	2	62	1.20
31182679--31182787	57	1.9	55	82	15	134	31	2	2	63	1.23
31182736--31182807	30	2.4	29	78	17	69	29	4	4	62	1.32
31182945--31183163	90	2.5	90	82	4	255	31	11	21	36	1.88
31183210--31183256	19	2.4	18	83	13	58	27	0	4	68	1.08
31183210--31183265	20	2.9	18	77	15	58	28	0	3	67	1.07
31185142--31185398	46	5.6	46	80	5	247	18	19	15	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31189940--31189993	17	3.0	17	76	17	56	31	5	0	62	1.18
31190169--31190202	17	2.0	17	88	0	50	55	5	2	35	1.39
31207926--31207973	24	2.0	24	91	0	78	43	10	27	18	1.82
31210933--31210958	12	2.2	12	100	0	52	73	11	0	15	1.11
31211877--31211910	17	2.0	17	88	11	52	29	11	5	52	1.61
31224836--31224912	22	3.4	22	67	19	68	35	2	25	36	1.70
31224831--31224925	46	2.1	46	100	0	190	33	2	23	41	1.66
31229414--31229490	22	3.4	22	67	19	68	35	2	25	36	1.70
31229409--31229503	46	2.1	46	100	0	190	33	2	23	41	1.66
31234364--31234406	13	3.2	13	86	6	50	39	2	2	55	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226