Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  124  of  226  ( 27070 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38358410--38358451
15
2.7
16
82
14
52
45
0
2
52
1.13
38358401--38358442
15
2.9
15
82
10
52
47
0
0
52
1.00
38358667--38358718
16
3.2
16
100
0
104
38
36
0
25
1.56
38366659--38366733
11
6.7
11
80
7
71
22
28
2
46
1.65
38367926--38367951
7
3.7
7
100
0
52
26
0
15
57
1.38
38368593--38368635
18
2.4
19
84
7
54
20
30
9
39
1.84
38369118--38369156
7
5.7
7
85
14
55
46
0
0
53
1.00
38369185--38369230
21
2.2
21
92
0
74
43
28
0
28
1.55
38369192--38369239
21
2.4
21
86
6
64
45
22
0
31
1.53
38369304--38369419
22
5.4
22
78
15
127
46
30
0
23
1.52
38369304--38369422
43
2.8
43
83
3
170
45
31
0
23
1.53
38369486--38369609
59
2.1
58
93
1
212
41
11
8
38
1.70
38372858--38372900
22
2.0
22
86
9
61
48
30
0
20
1.50
38373798--38373854
21
2.7
21
100
0
114
47
0
0
52
1.00
38374097--38374208
19
5.8
19
83
4
152
40
9
15
34
1.80
38374097--38374203
40
2.7
40
89
2
164
40
10
14
34
1.81
38374840--38374883
22
2.0
23
90
4
72
29
9
4
56
1.50
38375515--38375711
98
2.0
98
93
0
340
26
10
26
37
1.88
38376892--38376938
17
2.7
18
80
9
62
63
0
2
34
1.06
38385715--38385770
25
2.1
27
83
9
71
53
1
0
44
1.11
38388849--38388950
41
2.5
40
88
6
150
28
25
19
26
1.99
38394806--38394991
51
3.7
50
78
3
149
25
15
29
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38397891--38397950
12
4.9
12
68
11
50
53
3
1
41
1.27
38397880--38397963
37
2.2
36
79
6
87
63
2
2
32
1.20
38400559--38400684
22
5.8
22
73
14
100
15
17
19
46
1.84
38404893--38404939
17
2.8
17
86
0
58
38
34
10
17
1.84
38405238--38405277
16
2.7
15
84
7
55
32
25
12
30
1.92
38405381--38405516
52
2.6
51
86
4
182
36
22
11
29
1.89
38407424--38407608
40
4.7
40
80
7
200
24
22
28
25
1.99
38407477--38407641
79
2.1
79
82
6
192
26
20
27
25
1.99
38422157--38422296
67
2.1
69
86
4
196
40
4
19
36
1.71
38429987--38430033
16
2.7
18
77
16
53
51
0
2
46
1.13
38430186--38430230
17
2.8
17
84
15
60
46
4
4
44
1.43
38430202--38430247
17
2.6
18
83
12
60
45
0
4
50
1.21
38430087--38430565
252
1.9
252
86
2
685
38
7
7
46
1.61
38435525--38435615
33
2.8
33
81
5
96
34
17
20
27
1.95
38436855--38436906
15
3.5
15
76
10
52
17
30
28
23
1.97
38436855--38436915
30
2.0
30
93
0
104
18
31
29
21
1.96
38436868--38436931
30
2.1
30
85
5
85
18
32
29
18
1.95
38438497--38438577
40
2.0
40
100
0
162
43
9
2
44
1.50
38440355--38440397
21
2.0
21
86
8
61
48
2
16
32
1.58
38441468--38441509
20
2.1
20
90
0
66
45
4
14
35
1.66
38446670--38446698
6
4.8
6
100
0
58
17
0
13
68
1.20
38447107--38447161
21
2.6
21
79
0
65
27
30
20
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38447835--38447906
37
2.0
37
86
2
101
15
19
37
27
1.92
38447836--38447918
37
2.2
37
82
4
96
15
18
38
27
1.91
38455974--38456040
27
2.5
27
95
0
116
44
25
10
19
1.82
38462832--38462985
28
5.5
28
96
0
265
25
11
28
34
1.90
38462807--38462985
56
3.2
56
90
1
270
25
11
28
34
1.90
38476481--38476523
22
2.0
22
95
0
77
9
20
27
41
1.83
38476643--38476890
43
5.7
43
75
4
203
28
30
18
23
1.97
38476682--38476932
87
2.9
86
81
1
250
28
29
16
25
1.97
38476658--38476904
130
1.9
130
81
1
298
29
30
17
23
1.96
38476743--38476932
86
2.2
87
80
0
211
31
28
14
24
1.95
38477240--38477299
21
2.9
20
80
7
66
6
43
15
35
1.72
38477287--38477427
66
2.1
66
84
5
178
14
26
17
42
1.87
38477324--38477450
66
1.9
66
85
3
175
14
24
18
42
1.88
38482864--38484106
9
138.8
9
68
20
316
39
1
13
45
1.55
38482869--38482988
16
7.9
16
68
19
87
35
2
16
45
1.61
38482883--38483037
25
6.2
25
76
11
120
38
1
14
45
1.57
38482909--38483899
34
28.2
35
67
20
125
39
1
14
44
1.54
38483169--38484052
31
29.5
28
66
24
193
39
1
13
45
1.54
38482971--38484052
65
16.8
64
74
14
706
39
1
13
45
1.53
38483194--38483290
50
1.9
50
85
4
133
41
1
15
42
1.54
38483379--38483744
34
10.2
40
68
22
167
38
1
12
46
1.52
38484011--38484105
47
2.0
49
83
6
122
37
1
14
46
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38484168--38484202
16
2.2
16
100
0
70
28
17
0
54
1.43
38485099--38485162
34
1.9
34
90
3
103
65
14
0
20
1.26
38486608--38486661
23
2.5
22
82
8
58
44
0
7
48
1.31
38486610--38486676
20
3.2
21
73
14
50
47
0
7
44
1.31
38486695--38486725
8
3.9
8
95
0
53
12
0
0
87
0.55
38486685--38486726
16
2.5
17
80
11
50
11
7
0
80
0.88
38486695--38486735
9
4.2
10
81
12
50
14
2
0
82
0.76
38486677--38486735
29
2.0
29
87
6
84
13
5
1
79
0.97
38487448--38487486
21
1.9
21
89
5
62
38
41
0
20
1.53
38487397--38487547
80
1.9
77
86
4
212
45
22
0
31
1.58
38488063--38488327
41
6.5
41
87
2
356
35
23
22
18
1.96
38488355--38488490
40
3.5
39
77
7
125
21
21
19
37
1.94
38488651--38488683
16
2.0
17
88
5
50
45
0
15
39
1.46
38491195--38491244
25
2.0
25
100
0
100
40
12
16
32
1.84
38500041--38500075
16
2.3
16
90
9
56
65
0
0
34
0.93
38513972--38514014
5
8.8
5
92
5
52
46
0
9
44
1.35
38513872--38514364
256
1.9
248
84
8
647
46
6
10
36
1.65
38523276--38523500
40
5.7
40
85
7
198
26
20
27
25
1.99
38523315--38523500
40
4.7
40
89
3
227
27
20
26
24
1.99
38523315--38523533
80
2.8
79
79
10
225
28
20
26
24
1.99
38537143--38537589
225
2.0
226
97
0
851
28
24
17
28
1.98
38538663--38538729
33
2.1
31
89
10
100
41
1
5
50
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38538815--38538862
18
2.6
19
87
6
64
41
0
4
54
1.20
38539848--38539901
18
3.1
17
81
7
63
44
1
18
35
1.61
38540251--38540296
19
2.4
19
85
3
56
45
0
17
36
1.49
38544808--38544892
25
3.4
25
77
6
109
30
21
18
29
1.97
38550219--38550631
29
14.3
29
72
10
258
25
15
20
38
1.92
38564264--38564687
140
3.1
136
90
4
643
40
7
5
46
1.55
38567032--38567063
12
2.7
12
95
0
55
28
0
37
34
1.57
38567287--38567337
23
2.3
22
80
10
59
39
17
7
35
1.79
38567812--38567841
15
1.9
16
93
6
53
60
10
3
26
1.45
38577840--38577944
20
5.2
20
75
4
68
15
29
20
34
1.94
38579013--38579057
15
2.9
15
80
6
54
48
8
2
40
1.47
38582352--38582383
15
2.1
15
100
0
64
21
21
37
18
1.94
38586432--38586481
16
2.9
17
76
8
57
48
4
2
46
1.32
38592202--38592228
8
3.4
8
100
0
54
11
0
0
88
0.50
38595321--38595369
24
2.2
24
85
10
68
57
16
0
26
1.40
38597370--38597487
27
4.4
27
89
0
173
43
17
17
21
1.88
38598897--38598935
20
1.9
21
85
15
55
61
17
0
20
1.34
38602234--38602278
18
2.4
19
85
10
58
80
8
11
0
0.92
38602236--38602296
28
2.1
29
85
8
81
78
8
8
4
1.08
38603732--38603837
53
2.0
53
100
0
212
56
7
13
22
1.62
38606324--38606361
18
2.2
17
86
9
51
55
0
7
36
1.29
38608095--38608339
132
1.9
131
86
2
350
15
12
15
56
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38611285--38611349
30
2.2
30
82
0
76
30
6
26
36
1.81
38613712--38613881
83
2.0
83
91
0
277
37
23
18
20
1.94
38613733--38613879
42
3.5
42
68
9
129
37
23
19
19
1.94
38613818--38613879
21
3.0
21
73
7
63
35
24
20
19
1.96
38614043--38614100
29
2.0
29
93
0
98
37
20
0
41
1.53
38615584--38615626
11
3.8
11
78
6
50
65
4
0
30
1.13
38618064--38618657
309
1.9
309
92
0
992
26
16
22
34
1.95
38627414--38627577
62
2.7
59
78
15
169
42
1
3
52
1.26
38627710--38627761
16
3.2
16
78
5
59
30
23
3
42
1.72
38627981--38628031
26
2.0
26
88
3
77
45
0
7
47
1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226