genome.fa.s24.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  114  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35510930--35511159	102	2.3	102	89	3	347	29	14	25	30	1.95
35510932--35511195	102	2.6	102	83	6	315	29	14	25	29	1.95
35511142--35511260	63	1.9	62	91	1	193	30	15	22	31	1.95
35518239--35518271	17	2.1	17	88	11	52	30	0	6	63	1.18
35518369--35518707	51	6.7	51	80	7	329	28	14	25	30	1.95
35518373--35518455	26	3.2	26	65	21	66	28	10	26	33	1.90
35518369--35518711	102	3.4	102	84	7	432	28	14	25	30	1.95
35520133--35520166	16	2.1	16	88	0	50	8	14	8	67	1.41
35523873--35523952	37	2.2	37	84	6	103	41	10	16	32	1.81
35523893--35523974	35	2.4	34	82	10	94	45	14	13	26	1.82
35523873--35524222	17	19.4	18	67	17	147	45	10	14	30	1.78
35523996--35524037	20	2.1	19	86	8	57	38	7	14	40	1.73
35523997--35524172	36	4.9	35	75	12	144	45	9	13	31	1.75
35523994--35524180	35	5.2	36	73	11	152	44	9	13	33	1.75
35523911--35524303	17	22.2	17	68	17	103	46	11	13	28	1.77
35525021--35525078	16	3.7	16	86	2	82	0	24	0	75	0.80
35525021--35525087	22	3.1	21	80	15	75	0	23	0	76	0.79
35525024--35525086	3	20.7	3	77	9	65	0	25	0	74	0.82
35525395--35525532	29	4.7	29	77	5	127	40	7	20	31	1.80
35525417--35525535	29	4.1	29	80	3	132	41	6	20	31	1.78
35525736--35526709	77	12.7	75	86	6	928	36	20	16	26	1.94
35534110--35534160	24	2.2	23	86	10	68	47	9	0	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35534151--35534185	14	2.6	13	86	8	52	54	0	0	45	0.99
35534504--35534557	26	2.1	26	92	0	90	35	12	11	40	1.79
35534926--35535069	72	2.0	72	97	0	270	26	9	21	42	1.84
35535260--35535287	14	2.0	14	100	0	56	57	0	0	42	0.99
35535399--35535456	20	2.9	20	92	0	89	51	13	6	27	1.66
35535440--35535479	14	2.9	14	84	0	53	42	17	7	32	1.77
35542217--35542266	19	2.6	18	81	12	55	44	4	8	44	1.52
35542235--35542296	19	3.4	18	72	18	56	40	8	12	38	1.73
35542362--35542403	20	2.1	20	86	8	59	38	7	14	40	1.73
35542362--35542456	19	5.1	19	70	13	63	40	10	13	35	1.79
35542259--35542466	52	3.9	53	73	9	156	44	13	12	29	1.81
35542400--35542440	19	2.1	20	90	4	66	36	14	9	39	1.79
35542511--35542556	19	2.4	20	89	7	69	50	4	15	30	1.63
35542259--35542755	35	14.0	35	68	11	217	45	11	14	29	1.79
35542220--35542661	17	24.8	18	68	11	146	45	11	13	29	1.78
35542702--35542745	17	2.5	17	89	10	63	36	4	20	38	1.73
35543579--35543625	20	2.3	20	82	13	53	34	4	10	51	1.56
35543662--35543833	17	9.7	18	71	11	63	47	14	11	26	1.77
35543622--35544030	18	23.3	17	68	18	130	46	12	13	27	1.79
35543619--35543900	52	5.3	55	72	11	196	45	13	12	28	1.80
35543946--35543992	17	2.7	17	83	3	58	57	10	10	21	1.62
35543962--35544020	17	3.4	17	81	4	64	54	13	10	22	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35543662--35544029	35	10.4	34	72	9	215	47	12	13	27	1.79
35544010--35544049	21	2.0	21	85	5	55	45	7	5	42	1.54
35544045--35544105	17	3.5	17	81	16	72	36	6	19	37	1.78
35543643--35544100	142	3.2	142	77	8	339	46	11	13	28	1.79
35544439--35544477	8	4.8	8	81	6	51	0	17	0	82	0.68
35544726--35544778	13	3.8	13	74	16	52	0	28	0	71	0.86
35544727--35544777	3	16.7	3	84	11	68	0	29	0	70	0.87
35544727--35544777	16	3.3	16	89	5	70	0	29	0	70	0.87
35545190--35545251	28	2.2	28	88	2	97	41	6	19	32	1.77
35545143--35545248	29	3.8	28	73	5	97	40	6	21	31	1.79
35550151--35550212	31	2.0	31	93	0	106	17	8	35	38	1.80
35551734--35551874	39	3.6	39	86	3	194	29	2	21	46	1.63
35563085--35563119	18	1.9	18	88	0	52	51	5	34	8	1.56
35575865--35575911	22	2.1	22	84	0	58	46	17	17	19	1.84
35576053--35576112	27	2.2	27	85	5	77	35	20	21	23	1.96
35576184--35576265	24	3.4	24	86	0	92	46	20	6	26	1.74
35576202--35576267	24	2.8	24	90	0	96	46	21	3	28	1.66
35576303--35576588	27	10.6	27	73	9	174	24	17	19	37	1.93
35576418--35576576	81	2.0	81	84	2	212	24	19	19	36	1.95
35581233--35581422	51	3.8	50	78	2	200	31	26	15	26	1.96
35587607--35587695	28	3.1	27	76	15	63	51	1	1	46	1.15
35591091--35591225	50	2.7	50	95	0	234	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35594115--35594139	12	2.1	12	100	0	50	36	0	32	32	1.58
35602305--35602381	35	2.1	37	85	4	104	32	15	15	36	1.89
35606621--35606682	21	3.0	20	81	6	79	35	25	22	16	1.94
35607391--35607416	13	2.0	13	100	0	52	61	0	0	38	0.96
35624781--35624833	23	2.2	24	96	3	99	39	0	0	60	0.97
35627065--35627107	21	2.0	21	90	0	68	39	27	4	27	1.76
35628863--35628892	7	4.3	7	95	0	51	83	0	3	13	0.77
35631715--35631755	6	6.8	6	100	0	82	51	0	31	17	1.46
35635430--35635461	16	2.0	16	93	0	55	25	15	0	59	1.36
35640728--35640991	40	6.7	40	80	9	276	25	21	27	25	2.00
35640728--35640991	79	3.3	80	88	5	360	25	21	27	25	2.00
35645090--35645228	35	4.0	35	83	3	172	16	13	31	38	1.88
35659380--35659484	33	3.2	33	86	0	138	18	9	32	40	1.82
35663755--35663796	22	1.9	22	85	9	59	26	11	7	54	1.62
35664959--35665016	30	1.9	30	89	0	89	41	5	24	29	1.76
35665419--35665534	50	2.3	50	86	0	160	26	25	27	20	1.99
35665806--35665854	20	2.5	20	78	15	57	55	6	24	14	1.62
35667012--35667058	15	3.5	15	70	27	50	42	8	12	36	1.74
35667009--35667058	25	2.0	25	100	0	100	40	8	16	36	1.77
35670254--35670288	6	5.8	6	89	0	52	51	2	31	14	1.57
35670457--35670515	26	2.3	26	90	0	91	40	8	16	33	1.79
35678870--35679063	50	3.9	50	78	2	203	26	22	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35690744--35690778	17	2.1	16	89	5	52	22	8	5	62	1.45
35690879--35690910	14	2.3	14	94	0	55	31	0	15	53	1.43
35695126--35695154	11	2.6	11	100	0	58	20	13	41	24	1.89
35713946--35714000	21	2.7	20	80	5	65	40	7	29	23	1.81
35723921--35724064	53	2.7	53	87	5	211	31	10	28	29	1.90
35734377--35734563	50	3.8	50	78	2	180	27	21	28	22	1.99
35740346--35740568	27	8.3	26	76	12	157	43	17	14	23	1.86
35740346--35740543	54	3.7	54	84	1	245	44	17	14	23	1.85
35740399--35740553	81	1.9	81	80	5	179	45	18	13	23	1.84
35740346--35740568	54	4.1	55	79	9	201	43	17	14	23	1.86
35745041--35745272	27	8.7	26	78	4	158	43	16	16	24	1.87
35745066--35745275	54	3.9	53	82	1	233	42	17	16	23	1.88
35745067--35745275	81	2.6	80	84	5	251	42	17	15	23	1.88
35751966--35752013	18	2.6	19	87	6	64	33	8	0	58	1.28
35757590--35757656	26	2.6	26	81	11	75	20	17	4	56	1.58
35758485--35758517	14	2.3	15	89	5	50	30	12	30	27	1.92
35759803--35760513	88	8.2	88	76	9	602	27	25	24	23	2.00
35759988--35760142	78	2.0	78	85	2	213	23	27	25	23	2.00
35759900--35760208	166	1.9	166	89	2	487	26	26	24	22	2.00
35759812--35760320	254	2.0	253	83	2	635	26	26	24	22	2.00
35760184--35760546	175	2.1	175	86	1	503	28	25	23	22	1.99
35762190--35762253	24	2.7	24	71	20	62	35	3	3	57	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35762357--35762389	10	3.4	10	87	4	50	30	0	0	69	0.88
35765957--35765983	11	2.5	11	100	0	54	29	0	25	44	1.54
35771494--35772014	259	2.0	259	100	0	1042	33	20	15	29	1.94
35777546--35777602	24	2.4	24	78	0	60	28	26	19	26	1.99
35778060--35778088	14	2.1	14	100	0	58	27	6	13	51	1.66
35779136--35779176	19	2.0	20	86	9	57	24	14	14	46	1.82
35787825--35787873	16	3.1	17	80	14	59	55	4	2	38	1.31
35787864--35787944	24	3.4	23	69	17	67	45	8	3	41	1.52
35790053--35790101	18	2.7	18	75	15	55	42	14	0	42	1.45
35790901--35790943	14	2.8	15	82	10	52	67	2	2	27	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226