genome.fa.s24.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  104  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32094396--32094447	24	2.2	24	86	6	70	51	5	7	34	1.54
32106465--32106566	18	5.8	17	72	18	75	20	24	23	31	1.98
32106525--32106587	18	3.5	18	80	4	56	30	23	20	25	1.99
32113849--32113885	18	2.0	19	89	5	58	51	0	43	5	1.24
32117977--32118038	30	2.1	30	87	6	90	48	11	8	32	1.68
32124528--32124573	21	2.3	20	78	14	51	45	17	4	32	1.68
32124375--32125218	422	2.0	422	96	0	1562	38	18	11	30	1.87
32128753--32128797	13	3.7	12	80	13	56	26	6	2	64	1.30
32133145--32133472	27	12.2	27	81	5	344	20	17	20	42	1.90
32133641--32133680	20	2.0	20	85	0	53	22	40	20	17	1.92
32134544--32134571	10	2.8	10	100	0	56	17	0	17	64	1.30
32134905--32135079	89	2.0	88	87	5	255	40	18	14	25	1.89
32139500--32139563	31	2.1	31	87	0	92	42	18	17	21	1.89
32139533--32139758	27	8.4	27	87	6	316	43	18	17	20	1.88
32139533--32139772	81	3.0	80	90	2	365	42	19	16	21	1.90
32143219--32143304	31	2.9	30	77	5	84	40	13	11	33	1.81
32143266--32143332	29	2.3	27	76	14	71	40	14	10	34	1.81
32144336--32144376	19	2.2	19	86	0	55	34	7	7	51	1.58
32183270--32183446	89	2.0	89	84	2	230	39	19	14	26	1.90
32188099--32188142	6	7.0	6	80	10	52	75	0	0	25	0.81
32188100--32188144	20	2.3	19	88	7	72	75	0	0	24	0.80
32189553--32189617	29	2.2	30	86	5	87	46	0	3	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32190592--32190650	31	1.9	31	89	0	91	54	10	15	20	1.70
32199611--32199641	16	1.9	16	93	0	53	6	12	3	77	1.08
32202027--32202154	64	2.0	64	84	0	166	34	22	19	23	1.97
32206851--32207053	50	3.9	50	80	7	203	23	29	21	26	1.99
32206825--32207053	100	2.2	101	81	7	248	23	28	21	26	1.99
32210537--32210653	50	2.3	50	85	0	144	26	22	29	22	1.99
32211237--32211299	31	2.0	31	96	0	117	41	3	17	38	1.65
32213980--32214024	23	2.0	22	83	12	56	64	2	2	31	1.18
32213962--32214019	27	2.1	28	87	9	84	68	1	1	27	1.08
32219323--32219374	22	2.4	21	75	12	52	28	5	5	59	1.44
32226557--32226598	21	2.0	21	100	0	84	76	0	0	23	0.79
32231018--32231220	89	2.3	85	82	6	228	45	11	12	30	1.78
32232139--32232219	40	2.0	40	100	0	162	44	22	7	25	1.79
32236098--32236137	19	2.1	19	85	0	53	37	2	5	55	1.35
32237855--32237889	14	2.8	12	87	12	52	28	8	0	62	1.24
32242353--32242425	3	24.0	3	77	2	65	39	0	57	2	1.13
32247241--32247427	101	1.8	101	88	5	288	23	17	27	31	1.97
32247238--32247423	51	3.7	50	83	4	223	23	17	27	31	1.97
32247434--32247520	45	1.9	45	95	0	156	25	17	24	33	1.96
32255972--32256007	3	12.0	3	93	0	63	66	30	2	0	1.06
32263464--32263493	15	1.9	15	93	6	51	43	0	0	56	0.99
32263721--32263784	33	1.9	33	93	0	110	26	9	12	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32279398--32279457	19	3.3	19	81	11	63	21	6	0	71	1.08
32279398--32279445	19	2.5	20	83	10	64	22	6	0	70	1.09
32283540--32283609	30	2.3	30	76	13	72	40	2	8	48	1.49
32286170--32286204	15	2.3	15	90	0	52	31	2	0	65	1.07
32298368--32298415	20	2.4	20	85	0	60	31	25	12	31	1.92
32302728--32302752	2	12.5	2	100	0	50	52	0	0	48	1.00
32310054--32310169	59	2.0	59	94	0	205	21	20	18	38	1.93
32311752--32311831	35	2.3	35	86	0	106	25	17	26	31	1.97
32312748--32313021	78	3.6	77	79	6	272	27	14	13	45	1.82
32322821--32322851	16	1.9	16	93	0	53	6	16	19	58	1.59
32330158--32330297	68	2.0	72	84	9	191	52	2	2	42	1.31
32336001--32336207	102	2.0	103	92	0	344	40	21	10	27	1.85
32336762--32336838	38	2.1	36	83	11	93	50	2	2	44	1.29
32340553--32340599	26	1.9	26	87	12	73	14	8	8	68	1.39
32345162--32345234	16	4.6	16	71	8	60	42	4	26	27	1.73
32357478--32357510	11	3.1	11	91	4	50	66	3	0	30	1.06
32358750--32359309	100	5.6	100	87	1	789	22	24	22	30	1.99
32359026--32359300	50	5.5	50	69	6	198	22	25	23	29	1.99
32360713--32360763	14	3.6	13	87	12	66	13	9	0	76	1.02
32360711--32360763	15	3.7	14	85	9	63	13	11	0	75	1.05
32367368--32367429	25	2.5	25	97	0	115	38	16	29	16	1.90
32396888--32397081	35	5.6	35	84	3	214	40	16	21	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32396890--32397041	69	2.2	68	89	1	232	39	16	21	22	1.92
32396888--32397080	104	1.9	102	87	2	287	40	16	21	21	1.91
32397278--32397317	10	4.1	10	80	6	55	35	15	7	42	1.75
32397380--32397431	27	1.9	27	100	0	104	23	30	19	26	1.98
32431447--32431525	37	2.1	37	83	0	95	17	10	29	43	1.82
32444809--32445048	120	2.0	120	90	1	383	32	15	25	27	1.95
32457405--32457496	23	3.9	23	71	15	62	34	22	21	20	1.96
32468984--32469010	4	6.8	4	100	0	54	25	0	25	48	1.52
32470835--32470869	5	7.0	5	93	0	61	40	57	0	2	1.14
32471768--32471853	37	2.4	34	76	17	93	52	5	1	40	1.33
32471775--32471861	38	2.3	39	88	6	133	51	5	2	40	1.38
32475872--32475897	12	2.2	12	100	0	52	42	7	7	42	1.62
32482022--32482054	17	1.9	17	93	0	57	60	3	0	36	1.12
32498637--32498662	12	2.2	12	100	0	52	46	15	7	30	1.74
32505846--32505904	28	2.1	28	100	0	118	28	16	25	28	1.97
32506007--32506057	26	2.0	26	100	0	102	35	27	21	15	1.94
32506214--32506447	27	8.7	27	87	0	261	21	18	20	39	1.92
32506226--32506447	81	2.7	81	86	4	313	20	18	19	40	1.91
32508604--32508642	16	2.3	18	86	8	55	58	5	2	33	1.33
32514366--32514402	19	1.9	19	88	0	56	37	8	10	43	1.69
32514389--32514425	19	1.9	20	94	5	67	35	5	10	48	1.61
32517319--32517352	17	2.0	17	100	0	68	17	17	29	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32519439--32519527	25	3.6	25	78	6	108	33	21	17	26	1.96
32524255--32524279	13	1.9	13	100	0	50	20	0	0	80	0.72
32524501--32524549	20	2.3	21	82	6	55	16	10	0	73	1.09
32530626--32530655	12	2.5	12	94	0	51	20	26	26	26	1.99
32532465--32532503	18	2.2	18	95	0	69	41	28	0	30	1.57
32536026--32536101	9	8.4	9	86	5	100	43	23	7	25	1.80
32538865--32539151	56	5.1	56	79	14	263	42	16	10	29	1.82
32538901--32539151	57	4.5	57	84	6	307	43	15	9	30	1.80
32538886--32539151	113	2.4	113	86	3	369	43	16	10	29	1.81
32549786--32549907	43	2.8	44	72	17	112	34	27	15	22	1.95
32551348--32551567	27	8.1	27	83	5	239	42	18	14	25	1.88
32551348--32551567	54	4.1	54	84	2	273	42	18	14	25	1.88
32551348--32551567	81	2.7	81	86	2	300	42	18	14	25	1.88
32556717--32556742	5	5.2	5	100	0	52	42	19	19	19	1.90
32557497--32557556	30	2.0	31	86	3	86	40	0	40	20	1.52
32568638--32568677	18	2.2	18	86	8	55	35	10	7	47	1.65
32568852--32568935	44	1.9	44	90	0	132	46	7	8	38	1.62
32568903--32568936	18	1.9	18	88	5	52	55	5	2	35	1.39
32569970--32570011	17	2.5	17	76	3	50	33	2	0	64	1.07
32573022--32573052	15	2.1	15	93	0	53	90	0	9	0	0.46
32579541--32579626	25	3.5	23	80	10	100	59	1	1	38	1.13
32579524--32579629	48	2.1	52	86	11	159	60	1	0	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32582124--32582176	26	2.1	24	82	10	61	22	1	9	66	1.31
32585788--32585830	21	2.0	21	91	8	70	37	4	18	39	1.72
32587241--32587280	20	1.9	22	85	10	57	37	7	7	47	1.60
32587879--32587949	36	2.0	36	94	0	124	46	14	12	26	1.80
32587896--32587949	17	2.9	19	71	20	60	46	16	12	24	1.82
32587878--32587941	17	3.6	17	72	15	58	46	12	12	28	1.78
32597099--32597140	22	1.9	22	90	0	66	42	11	21	23	1.86
32604671--32605139	234	2.0	235	91	1	762	31	9	30	28	1.88
32604669--32605146	47	10.1	47	94	1	762	31	9	30	28	1.89
32605309--32605387	37	2.1	37	90	0	122	24	18	31	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226