genome.fa.s24.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  146  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45696952--45697001	17	2.8	18	76	14	50	58	0	4	38	1.17
45696966--45697007	20	2.2	20	82	4	50	52	2	2	42	1.27
45704024--45704061	18	2.1	19	90	5	60	52	5	21	21	1.66
45711001--45711062	18	3.2	21	65	21	62	41	16	9	32	1.80
45710987--45711068	37	2.3	36	95	4	148	42	17	10	29	1.83
45713488--45713622	67	2.0	67	91	0	216	28	31	17	22	1.96
45720110--45720621	144	3.6	143	82	5	510	27	21	17	33	1.96
45720877--45720902	8	3.2	8	100	0	52	42	0	23	34	1.54
45731978--45732039	18	3.2	21	65	21	62	41	16	9	32	1.80
45731964--45732045	37	2.3	36	95	4	148	42	17	10	29	1.83
45734463--45734596	67	2.0	66	91	1	214	29	31	17	22	1.96
45741064--45741153	17	5.2	17	69	15	58	65	2	4	27	1.23
45741181--45741246	20	3.3	20	79	10	55	66	4	0	28	1.11
45744036--45744077	17	2.6	16	88	3	66	30	0	0	69	0.89
45746672--45746696	12	2.1	12	100	0	50	0	8	0	92	0.40
45749522--45749681	43	3.8	42	82	9	200	21	18	27	31	1.97
45749526--45749681	84	1.9	84	85	5	217	22	18	28	30	1.97
45749842--45749873	16	1.9	17	93	6	57	40	0	21	37	1.54
45756069--45756116	17	2.8	17	87	6	71	52	2	10	35	1.48
45756801--45756914	58	2.0	58	96	0	210	44	9	14	30	1.78
45758609--45758661	27	1.9	28	88	3	81	47	0	1	50	1.12
45758696--45758770	17	4.8	16	73	14	68	46	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45758721--45758766	15	3.0	15	76	17	58	47	0	0	52	1.00
45758802--45758855	13	4.3	13	79	15	60	61	0	0	38	0.96
45758820--45758859	11	3.5	11	87	12	62	67	0	0	32	0.91
45758812--45758859	24	2.0	24	92	8	80	64	0	0	35	0.94
45760191--45760216	12	2.2	12	100	0	52	30	7	0	61	1.24
45761651--45761704	25	2.2	24	83	3	63	42	9	11	37	1.73
45761662--45761714	24	2.2	25	83	10	65	45	5	11	37	1.64
45762250--45762283	16	2.1	16	88	0	50	50	14	17	17	1.79
45765084--45765124	21	2.0	21	90	0	64	29	21	29	19	1.98
45767026--45767059	16	2.1	16	88	0	50	50	14	17	17	1.79
45780874--45780907	16	2.1	16	100	0	68	38	0	11	50	1.39
45781186--45781294	9	11.7	9	80	7	110	23	6	29	40	1.79
45781186--45781295	29	3.9	29	85	4	125	23	6	29	40	1.79
45781387--45781464	28	2.8	27	73	16	77	32	11	26	29	1.91
45781384--45781464	26	2.9	26	74	15	81	32	11	25	30	1.91
45782078--45782159	9	9.2	8	70	19	56	54	2	0	42	1.13
45782078--45782156	10	8.7	10	67	24	50	53	2	0	44	1.14
45788620--45788734	60	1.9	60	83	3	151	33	9	15	41	1.80
45798676--45798927	27	9.3	27	85	1	344	43	19	19	17	1.89
45799286--45799366	28	2.9	28	90	0	126	20	22	25	30	1.98
45804886--45804919	9	3.7	9	92	4	50	73	0	0	26	0.83
45810008--45810038	10	3.1	10	90	0	53	29	0	22	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45811373--45811397	10	2.5	10	100	0	50	84	0	0	16	0.63
45828000--45828034	18	2.0	17	88	5	52	68	0	0	31	0.90
45834175--45834201	14	1.9	14	100	0	54	51	7	11	29	1.64
45849262--45849295	16	2.2	15	89	5	50	55	0	0	44	0.99
45857543--45857786	122	2.0	122	97	0	461	23	15	18	42	1.89
45860831--45860876	23	2.0	23	82	4	56	67	8	6	17	1.39
45861054--45861131	9	8.6	9	75	17	72	65	1	1	32	1.09
45861055--45861179	56	2.2	55	82	13	148	64	2	0	32	1.12
45861058--45861161	29	3.6	28	76	17	90	62	2	0	33	1.16
45861068--45861178	29	4.0	26	72	15	80	63	2	0	33	1.15
45861055--45861191	10	14.6	9	71	17	61	63	2	0	32	1.14
45861941--45861984	16	2.8	15	86	6	52	45	4	4	45	1.44
45862935--45862966	15	2.1	15	94	0	55	15	0	15	68	1.21
45865174--45865347	87	2.0	87	98	0	339	29	8	14	46	1.75
45866480--45866605	61	2.1	61	89	5	193	18	28	19	33	1.96
45874750--45874801	20	2.7	20	90	3	70	42	0	1	55	1.10
45874758--45874803	20	2.3	20	92	0	83	41	0	2	56	1.11
45877968--45877994	14	1.9	14	100	0	54	40	0	7	51	1.30
45879074--45879260	49	3.6	50	80	8	180	24	27	19	28	1.98
45893011--45893048	20	2.0	20	84	5	51	10	2	10	76	1.12
45893627--45893673	18	2.5	18	82	6	58	40	8	29	21	1.83
45902285--45902345	20	3.2	20	81	6	74	60	4	1	32	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45903934--45904238	113	2.7	113	81	4	346	31	18	20	30	1.96
45904531--45904654	7	17.4	7	72	12	74	25	0	25	48	1.57
45904594--45904660	22	3.1	22	80	4	73	22	0	29	47	1.51
45904600--45904629	15	2.0	15	93	0	51	20	0	36	43	1.52
45904946--45904970	13	1.9	13	100	0	50	48	0	4	48	1.20
45905012--45905252	43	5.6	43	85	2	324	24	17	28	29	1.97
45905012--45905249	85	2.8	86	84	3	327	24	17	28	28	1.97
45906221--45906683	154	3.0	153	90	3	718	43	15	10	30	1.80
45906295--45906677	150	2.5	150	92	2	489	43	15	10	29	1.81
45909343--45909369	12	2.2	12	100	0	54	66	7	0	25	1.17
45913420--45913452	17	1.9	17	88	11	50	54	0	3	42	1.15
45914017--45914044	14	2.0	14	100	0	56	64	14	0	21	1.29
45914661--45914695	14	2.5	14	95	0	61	31	14	0	54	1.40
45919790--45920477	344	2.0	344	100	0	1376	34	8	18	38	1.81
45925039--45925215	92	1.9	91	90	3	284	42	15	4	37	1.67
45943116--45943291	45	3.9	45	79	2	192	40	13	15	30	1.86
45943224--45943319	45	2.1	45	84	0	120	37	12	21	28	1.90
45943755--45943784	14	2.2	13	94	5	51	53	13	0	33	1.40
45945063--45945103	16	2.4	17	88	8	57	75	12	4	7	1.16
45957520--45957558	20	2.1	19	85	9	53	30	5	12	51	1.62
45960725--45960783	31	1.9	31	96	0	109	64	3	0	32	1.10
45961131--45961165	14	2.5	13	86	13	52	51	14	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45963692--45963843	27	5.6	27	93	3	241	30	28	13	26	1.94
45963692--45963843	55	2.8	55	94	0	259	30	28	13	26	1.94
45971699--45971850	27	5.6	27	93	3	241	30	28	13	26	1.94
45971699--45971850	55	2.8	55	94	0	259	30	28	13	26	1.94
45995183--45995236	18	3.0	18	91	0	90	40	20	14	24	1.90
45997815--45997919	52	2.0	51	100	0	174	28	3	18	49	1.64
46003305--46003653	23	15.0	23	84	3	439	41	19	11	27	1.86
46003306--46003657	116	3.0	115	89	2	499	41	19	11	27	1.85
46012055--46012414	23	15.6	23	81	4	404	41	19	11	26	1.86
46012068--46012414	91	3.8	90	85	3	406	41	19	12	26	1.87
46012055--46012414	114	3.1	113	87	4	463	41	19	11	26	1.86
46021299--46021362	9	7.1	9	76	13	51	56	1	0	42	1.09
46021365--46021421	29	1.9	29	86	10	80	61	1	1	35	1.17
46021363--46021421	25	2.5	24	81	10	59	61	1	1	35	1.16
46024238--46024344	16	6.7	16	72	0	61	27	26	17	28	1.98
46024433--46024679	76	3.3	75	84	5	347	33	20	9	36	1.86
46024649--46024708	18	3.3	18	86	9	86	31	20	10	38	1.85
46024834--46024882	25	2.0	25	91	0	80	26	6	26	40	1.79
46024841--46024889	13	3.8	13	70	24	50	26	4	24	44	1.71
46031608--46031724	62	1.9	59	86	5	162	51	3	3	41	1.35
46031742--46031810	37	1.9	35	82	11	86	56	1	1	40	1.17
46033341--46033372	15	2.1	15	100	0	64	62	12	6	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46038595--46038619	12	2.1	12	100	0	50	24	0	0	76	0.80
46045804--46045857	19	2.8	19	97	0	99	38	11	16	33	1.84
46045804--46045880	19	3.7	22	87	6	76	38	9	16	35	1.81
46046721--46046970	24	10.7	24	70	15	148	34	6	4	55	1.46
46046719--46046886	70	2.4	69	78	9	180	32	6	4	55	1.46
46046680--46046961	69	4.1	68	74	14	206	34	6	4	54	1.47
46047019--46047063	23	2.0	23	90	0	72	31	6	4	57	1.44
46054292--46054371	16	4.9	17	72	7	60	71	1	21	6	1.15
46054295--46054375	42	1.9	42	82	5	101	69	1	23	6	1.19
46062003--46062027	7	3.6	7	100	0	50	12	0	0	88	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226