genome.fa.s24.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  46  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15549201--15549234	14	2.4	14	95	0	59	52	8	0	38	1.33
15561839--15561864	7	3.7	7	100	0	52	38	0	0	61	0.96
15572921--15573013	44	2.1	45	84	11	120	38	7	4	49	1.51
15578292--15578414	43	2.9	43	77	9	119	19	20	14	45	1.85
15579912--15579987	29	2.6	29	80	15	93	64	0	1	34	1.02
15593200--15593245	22	2.0	22	84	12	58	43	4	15	36	1.66
15604330--15604360	11	2.7	11	95	5	53	67	0	3	29	1.06
15604512--15604542	13	2.4	13	88	0	53	22	38	25	12	1.90
15605401--15605427	13	2.1	13	100	0	54	33	14	7	44	1.73
15609118--15609186	31	2.2	31	92	0	111	30	17	17	34	1.93
15610341--15610407	20	3.3	20	79	8	64	16	22	20	40	1.91
15612661--15612706	21	2.2	21	100	0	92	34	15	17	32	1.91
15613393--15613566	82	2.1	82	91	0	285	30	23	20	25	1.98
15613393--15613566	41	4.2	41	88	2	251	30	23	20	25	1.98
15614475--15614502	2	14.0	2	100	0	56	50	0	0	50	1.00
15628202--15628232	9	3.4	9	100	0	62	80	0	0	19	0.71
15632779--15632828	25	2.0	25	100	0	100	48	8	12	32	1.69
15637901--15637972	32	2.2	32	80	4	83	50	6	11	31	1.65
15648822--15648880	25	2.4	25	97	0	109	20	10	20	49	1.77
15651127--15651172	23	2.0	23	82	0	56	19	2	2	76	1.00
15652802--15652828	2	13.5	2	100	0	54	48	0	0	51	1.00
15653631--15653655	3	8.3	3	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15663033--15663099	31	2.1	33	88	5	102	41	20	7	29	1.80
15664560--15664604	22	2.0	22	100	0	90	48	4	17	28	1.66
15667136--15667165	14	2.1	14	100	0	60	26	23	13	36	1.92
15671220--15671506	120	2.4	120	88	2	441	44	2	5	47	1.40
15671452--15671486	18	2.0	17	88	5	52	45	0	0	54	0.99
15671633--15671737	44	2.5	40	76	15	113	31	29	4	34	1.78
15671631--15671740	45	2.6	44	81	8	131	31	29	5	33	1.80
15671719--15671761	16	2.7	16	96	0	77	23	37	2	37	1.68
15678415--15678463	24	2.0	25	84	4	64	67	4	2	26	1.19
15680989--15681029	18	2.3	18	88	12	59	36	0	19	43	1.51
15681253--15681305	23	2.3	23	83	0	79	18	18	28	33	1.95
15683454--15683553	50	2.0	50	94	0	173	36	9	21	34	1.85
15684928--15684973	11	4.2	11	86	8	58	23	28	0	47	1.52
15684928--15684970	10	4.0	10	82	11	50	23	30	0	46	1.52
15684989--15685047	29	2.1	27	84	6	73	33	1	5	59	1.29
15686024--15686173	75	2.0	75	98	0	291	26	24	20	28	1.99
15686894--15686936	18	2.4	18	84	0	50	20	27	9	41	1.83
15690564--15690854	126	2.3	126	92	0	474	26	21	18	33	1.96
15692710--15692781	27	2.8	25	79	8	90	33	20	27	18	1.96
15692849--15692920	24	3.0	24	71	4	63	41	18	23	16	1.89
15693073--15693113	20	2.0	20	86	13	57	48	14	0	36	1.44
15695101--15695198	33	2.9	35	73	19	91	51	0	3	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15699143--15699186	23	2.0	21	82	8	52	61	9	20	9	1.53
15699434--15699487	21	2.6	21	96	0	99	37	25	20	16	1.93
15709077--15709155	41	1.9	41	84	0	104	32	25	18	22	1.97
15712205--15712257	26	2.0	26	82	7	63	18	9	11	60	1.57
15720215--15720277	31	2.0	32	87	3	92	57	0	1	41	1.08
15729536--15729637	40	2.5	40	90	0	159	15	23	32	28	1.95
15731479--15731536	27	2.1	28	87	3	82	34	25	8	31	1.86
15743212--15743243	11	2.9	11	95	0	55	25	15	3	56	1.54
15743179--15743273	39	2.4	41	87	5	149	35	15	3	45	1.63
15747892--15748126	124	1.9	124	85	3	330	31	15	21	31	1.94
15747872--15748136	124	2.1	123	82	5	327	31	15	21	30	1.95
15751354--15752398	23	40.3	29	76	16	620	29	0	22	46	1.58
15751566--15752381	23	32.9	23	76	16	690	28	0	22	48	1.54
15751537--15752381	51	16.9	46	77	16	712	28	0	22	48	1.54
15754013--15754046	15	2.3	15	90	5	52	67	5	0	26	1.13
15754145--15754201	29	2.0	29	93	6	98	59	1	0	38	1.08
15754238--15754284	22	2.1	22	84	0	58	34	0	34	31	1.58
15754243--15754284	22	1.9	22	90	0	66	33	0	33	33	1.58
15754256--15754314	30	2.0	30	93	0	100	33	0	35	30	1.58
15754234--15754335	52	2.0	51	84	9	136	35	0	32	32	1.58
15754286--15754378	22	4.2	22	78	13	109	40	0	27	31	1.57
15755118--15755150	6	5.5	6	100	0	66	0	69	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15758301--15758367	34	1.9	35	87	3	100	46	11	8	32	1.72
15758478--15758502	13	1.9	13	100	0	50	8	8	0	84	0.79
15758551--15758597	22	2.1	22	88	4	67	19	2	4	74	1.09
15758669--15758710	14	3.1	13	80	19	50	78	2	2	16	0.96
15758695--15758749	23	2.3	23	84	3	65	72	3	7	16	1.21
15758719--15758770	12	4.2	12	79	11	61	78	1	9	9	1.03
15763158--15763201	13	3.4	13	74	0	52	56	4	4	34	1.40
15769717--15769747	16	1.9	16	93	0	53	54	12	0	32	1.38
15770057--15770263	22	8.9	23	69	21	128	40	14	12	32	1.84
15770057--15770266	47	4.5	45	89	5	285	40	14	12	32	1.84
15770057--15770263	94	2.2	94	91	3	328	40	14	12	32	1.84
15770513--15770547	15	2.3	15	90	9	54	51	22	0	25	1.48
15771194--15771317	43	2.9	43	79	13	121	30	29	19	20	1.97
15773904--15773980	28	2.8	28	80	7	86	28	29	19	22	1.98
15773934--15774005	28	2.5	28	81	4	72	27	26	23	22	1.99
15773795--15774178	172	2.2	172	81	4	425	27	26	21	24	1.99
15774692--15774754	27	2.3	27	83	5	74	39	17	20	22	1.92
15776289--15776428	70	2.0	70	98	0	271	34	12	25	27	1.92
15777110--15777190	39	2.1	39	81	4	92	32	7	22	38	1.82
15783282--15783331	20	2.5	20	80	3	57	48	0	0	52	1.00
15783243--15783328	28	3.2	27	76	14	79	47	0	2	50	1.14
15792123--15792187	31	2.1	32	82	8	80	44	0	29	26	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15793843--15793923	25	3.3	25	71	8	76	70	9	12	7	1.34
15793870--15793910	13	3.2	13	89	3	57	80	0	17	2	0.82
15805795--15805839	21	2.1	22	84	12	58	53	0	2	44	1.13
15814600--15814636	13	2.9	13	92	4	58	43	24	0	32	1.55
15814628--15814667	13	3.1	13	88	0	62	40	22	7	30	1.81
15815347--15815399	25	2.2	24	89	3	79	73	1	1	22	1.03
15817908--15817943	18	2.0	18	88	0	54	16	0	5	77	0.94
15822101--15822176	23	3.2	23	84	5	89	36	27	22	13	1.91
15822130--15822204	26	2.9	26	88	2	107	37	22	22	17	1.94
15839046--15839214	51	3.4	51	74	12	190	36	15	16	31	1.91
15839047--15839283	96	2.5	95	89	0	339	36	15	18	29	1.92
15839046--15839283	51	4.9	51	71	14	189	36	15	18	29	1.92
15839191--15839349	44	3.6	44	86	1	212	33	18	20	27	1.96
15839191--15839351	88	1.8	88	86	5	236	32	18	20	27	1.96
15839361--15839469	50	2.2	50	84	0	137	32	17	16	33	1.92
15847004--15847037	3	11.3	3	100	0	68	0	32	0	67	0.91
15848496--15848551	24	2.3	24	90	0	85	39	5	7	48	1.54
15854573--15854622	16	3.1	17	80	8	50	64	2	2	32	1.16
15854754--15854784	15	2.0	16	93	6	55	58	0	0	41	0.98
15856314--15856378	11	5.8	12	76	18	68	27	30	1	40	1.66
15856338--15856437	51	2.0	51	86	4	139	27	25	3	45	1.68
15862615--15862696	41	2.0	41	100	0	164	19	4	36	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15863359--15863914	40	13.9	40	92	1	918	22	21	29	26	1.99
15868925--15869051	21	6.0	21	82	1	155	46	26	2	24	1.65
15868925--15869051	43	3.0	43	83	6	177	46	26	2	24	1.65
15868925--15869048	64	2.0	63	85	1	167	45	27	2	25	1.66
15871773--15871803	9	3.4	9	90	0	53	38	22	12	25	1.90
15873140--15873708	126	4.5	125	89	2	813	29	22	17	30	1.96
15873140--15873708	251	2.3	251	89	3	842	29	22	17	30	1.96
15873820--15873877	16	3.7	16	70	21	50	50	29	0	20	1.49
15874183--15874232	16	3.1	17	80	8	50	62	2	4	32	1.25
15874242--15874266	13	1.9	13	100	0	50	24	12	0	64	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226