genome.fa.s24.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  214  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63883714--63883861	72	2.1	72	85	0	197	36	18	14	30	1.91
63885636--63885723	9	10.1	8	73	15	68	30	2	2	64	1.18
63885643--63885728	8	10.1	8	77	12	82	33	1	2	62	1.15
63885636--63885728	17	5.4	17	76	11	91	33	2	2	62	1.19
63895769--63895806	18	2.1	19	85	5	51	71	0	2	26	1.00
63901928--63901963	6	5.7	6	90	9	54	33	0	0	66	0.92
63901923--63901970	18	2.7	16	79	20	51	33	0	0	66	0.92
63907550--63907579	2	15.0	2	92	0	51	46	3	50	0	1.18
63908436--63908844	106	3.8	107	89	2	610	33	20	18	28	1.96
63909297--63909323	12	2.2	12	100	0	54	66	0	0	33	0.92
63915274--63915311	19	2.0	19	94	0	67	23	21	18	36	1.95
63919080--63919220	72	2.0	72	92	0	237	38	20	12	29	1.89
63920920--63921005	26	3.3	25	78	16	86	37	2	5	54	1.37
63920935--63920996	8	7.4	8	75	10	61	40	1	3	54	1.26
63920935--63921005	17	4.2	17	72	12	65	40	1	4	53	1.29
63920935--63921007	18	4.2	18	75	13	64	41	1	4	53	1.28
63925486--63925523	20	2.0	20	89	5	60	50	15	7	26	1.72
63929933--63929970	20	2.0	20	89	5	60	50	15	7	26	1.72
63933713--63933748	18	2.0	18	88	0	54	47	8	0	44	1.33
63938184--63938210	14	1.9	14	100	0	54	29	0	0	70	0.88
63942992--63943042	23	2.4	20	79	20	59	29	5	1	62	1.29
63943070--63943121	19	2.7	20	82	11	56	32	0	7	59	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63943702--63943784	31	2.7	29	83	7	85	34	12	14	38	1.83
63943954--63944012	29	2.0	30	87	9	86	49	15	6	28	1.70
63947477--63947509	16	2.1	16	100	0	66	63	6	12	18	1.48
63948556--63948616	27	2.3	27	83	11	72	70	1	3	24	1.11
63959610--63959649	21	1.9	21	85	10	55	45	2	0	52	1.14
63961180--63961229	18	2.9	18	75	19	54	48	2	0	50	1.12
63968500--63968533	17	2.0	17	88	0	50	26	2	8	61	1.40
63974827--63974861	17	2.0	18	88	5	54	71	0	0	28	0.86
63979317--63979693	138	2.7	135	79	4	353	37	22	22	17	1.94
63979317--63979693	69	5.5	69	80	4	300	37	22	22	17	1.94
63979571--63979816	123	2.0	123	84	1	323	36	21	23	19	1.95
63979743--63979984	69	3.7	66	72	14	212	39	21	21	17	1.92
63979803--63981968	60	34.0	60	69	16	873	39	21	22	16	1.92
63979743--63979987	129	1.9	129	85	3	341	40	21	21	17	1.92
63979935--63980094	51	2.9	53	73	13	162	39	25	21	14	1.91
63980046--63980710	69	10.2	70	75	16	593	39	21	22	16	1.92
63979986--63981907	129	14.9	129	83	6	2178	39	21	22	16	1.92
63980459--63980823	123	2.9	123	80	7	335	37	21	22	18	1.94
63980711--63981967	69	19.4	66	75	14	957	39	21	21	17	1.92
63981724--63982040	129	2.5	129	86	2	413	37	19	22	19	1.94
63981919--63982084	69	2.4	68	76	7	172	37	19	21	21	1.95
63982036--63982132	48	2.0	48	89	0	149	35	18	23	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63981965--63982201	117	2.0	117	82	3	289	33	18	24	23	1.97
63982082--63982433	69	5.1	69	81	5	336	34	21	23	20	1.97
63981917--63982262	186	1.9	186	82	2	435	34	20	23	21	1.97
63982097--63982433	138	2.4	136	80	5	381	33	22	24	20	1.97
63982280--63982503	69	3.2	70	83	4	188	37	24	19	18	1.94
63982191--63982501	138	2.3	138	80	3	322	36	23	20	19	1.95
63985930--63985990	14	3.9	15	75	16	54	60	0	4	34	1.18
63991090--63991149	29	2.1	29	93	0	102	40	8	11	40	1.72
64004269--64004317	16	2.6	19	75	18	50	46	6	2	44	1.39
64006564--64006622	20	3.0	20	73	9	59	45	11	0	42	1.41
64011264--64011304	21	2.0	21	90	0	64	29	21	29	19	1.98
64019277--64019345	31	2.3	30	82	5	77	40	10	5	43	1.62
64022103--64022141	16	2.4	16	91	0	60	48	0	17	33	1.48
64022654--64022711	31	1.9	31	92	3	100	46	8	8	36	1.65
64030724--64030774	24	2.1	23	82	13	59	35	0	5	58	1.22
64032796--64032944	73	2.0	73	97	0	280	34	6	12	46	1.67
64033850--64033888	16	2.7	15	88	11	55	69	0	28	2	1.02
64038867--64038928	29	2.2	28	82	2	70	20	19	8	51	1.72
64047573--64047677	18	5.8	18	77	0	93	33	33	12	20	1.90
64047574--64047674	36	2.8	36	76	0	112	33	31	12	21	1.91
64050886--64051267	114	3.4	113	84	5	502	24	27	28	18	1.98
64053308--64053361	15	3.7	15	77	5	56	53	0	14	31	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64056863--64056893	3	10.3	3	100	0	62	32	0	0	67	0.91
64057416--64057461	6	7.5	6	87	4	56	34	4	0	60	1.16
64057424--64057466	18	2.4	18	88	0	59	34	6	0	58	1.25
64058028--64058053	12	2.2	12	100	0	52	42	15	0	42	1.47
64067931--64068112	85	2.1	85	98	1	355	39	23	16	20	1.92
64073068--64073102	18	1.9	18	88	0	52	31	8	25	34	1.86
64074892--64074931	19	2.1	19	85	4	53	30	2	5	62	1.29
64078125--64078158	15	2.3	15	90	5	52	38	2	2	55	1.30
64078857--64078961	33	3.2	33	82	5	122	37	19	13	30	1.90
64095646--64095680	18	1.9	18	94	0	61	54	2	5	37	1.39
64096214--64096245	3	10.3	3	93	6	55	65	0	3	31	1.08
64097387--64097455	27	2.6	27	95	2	122	14	7	42	36	1.73
64107120--64107171	26	2.0	26	81	7	61	44	0	1	53	1.11
64109507--64109563	29	2.0	29	83	10	73	33	15	10	40	1.82
64119977--64120018	17	2.4	18	92	4	68	66	0	2	30	1.04
64119999--64120072	28	2.5	28	76	10	78	56	4	2	36	1.32
64124386--64124480	39	2.4	38	85	5	118	21	2	27	49	1.60
64124519--64124559	18	2.3	18	95	0	73	21	26	19	31	1.97
64131948--64132161	105	2.0	105	100	0	428	29	23	14	31	1.95
64145226--64145292	32	2.1	33	86	8	93	53	1	1	43	1.19
64152115--64152145	16	2.0	16	93	6	55	67	6	0	25	1.14
64152139--64152172	17	2.1	17	88	5	52	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64160983--64161034	27	1.9	27	84	7	70	48	3	0	48	1.20
64160979--64161010	12	2.7	12	90	0	55	40	6	0	53	1.26
64160979--64161034	12	4.4	13	80	10	53	44	3	0	51	1.18
64161340--64161389	24	2.1	24	88	3	75	52	2	2	44	1.24
64162232--64162294	29	2.1	30	82	8	76	53	0	4	41	1.22
64162790--64162844	27	2.0	27	100	0	110	34	7	21	36	1.81
64163225--64163258	16	2.1	16	88	0	50	41	2	20	35	1.68
64163605--64163688	29	2.9	28	83	5	96	36	21	0	41	1.53
64163593--64163729	58	2.3	60	80	6	156	37	21	2	39	1.66
64163593--64163720	30	4.3	29	77	7	125	36	19	1	42	1.61
64164220--64164280	23	2.5	24	84	12	81	78	0	21	0	0.75
64164220--64164286	6	11.2	6	78	13	50	79	0	19	1	0.82
64164372--64164421	19	2.7	19	81	9	59	76	14	10	0	1.03
64164719--64164776	15	3.7	15	81	9	62	31	0	0	68	0.89
64164726--64164758	5	6.6	5	100	0	66	36	0	0	63	0.95
64164719--64164774	10	5.3	10	85	8	58	30	0	0	69	0.89
64164710--64164788	32	2.5	32	78	8	83	32	1	0	65	1.00
64164917--64164965	18	2.7	19	78	6	57	34	14	4	46	1.63
64164939--64164983	21	2.2	20	84	8	54	35	11	8	44	1.71
64164992--64165380	18	22.0	18	69	13	200	30	12	11	45	1.77
64164992--64165380	35	11.0	34	71	15	204	30	12	11	45	1.77
64165315--64165401	17	5.2	17	75	13	65	34	10	11	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64173931--64173985	24	2.3	23	78	12	58	47	3	1	47	1.30
64174411--64174447	5	7.4	5	100	0	74	78	0	0	21	0.75
64174473--64174528	28	2.0	28	83	13	71	33	1	1	62	1.16
64174580--64174625	15	3.0	15	81	6	56	43	10	2	43	1.51
64175025--64175071	9	5.2	9	97	0	76	40	27	10	21	1.86
64175157--64175246	39	2.3	39	84	3	126	18	2	28	50	1.59
64176301--64176372	35	2.1	35	100	0	144	43	8	25	23	1.81
64179297--64179339	20	2.3	19	84	15	54	34	0	4	60	1.17
64184983--64185022	13	2.8	15	85	11	57	75	5	7	12	1.18
64185335--64185409	30	2.5	31	86	6	109	46	8	8	37	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226