genome.fa.s24.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  195  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58751905--58751962	28	2.1	27	80	3	62	48	5	10	36	1.60
58753066--58753108	3	14.3	3	100	0	86	32	0	0	67	0.91
58760763--58760801	10	3.9	10	80	12	53	46	2	0	51	1.14
58769088--58769180	46	2.0	46	91	0	150	33	9	29	27	1.89
58778518--58778547	15	2.0	15	93	0	51	43	0	6	50	1.28
58795165--58795194	14	2.1	14	93	0	51	50	10	3	36	1.53
58801468--58801875	124	3.3	123	85	3	534	31	16	19	32	1.94
58801780--58801959	84	2.1	85	93	1	317	30	17	17	34	1.93
58801656--58802046	208	1.9	207	86	3	563	31	17	18	31	1.94
58802255--58802316	22	2.8	22	85	0	88	24	0	30	45	1.54
58802241--58802310	15	4.8	15	74	11	56	24	1	30	44	1.62
58803042--58803104	25	2.6	25	82	2	74	9	41	17	31	1.82
58804190--58804437	43	5.8	44	76	8	210	24	14	27	34	1.94
58804367--58804454	42	2.1	43	84	2	115	22	17	26	34	1.96
58805968--58806003	17	2.1	17	89	5	54	38	2	2	55	1.29
58806001--58806059	28	2.1	27	81	12	66	59	5	0	35	1.20
58806194--58806257	25	2.5	27	80	7	80	50	1	1	46	1.20
58809654--58809685	13	2.3	15	89	10	50	68	0	0	31	0.90
58813905--58813944	20	2.0	20	90	0	62	15	45	25	15	1.84
58815420--58815472	3	17.7	3	80	0	61	32	1	5	60	1.31
58817498--58817553	27	2.1	27	82	0	67	50	12	3	33	1.58
58817569--58817598	16	1.9	15	93	6	51	66	6	0	26	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58820181--58820250	30	2.4	29	90	2	104	47	5	2	44	1.41
58820181--58820266	29	2.9	29	87	1	109	45	8	2	44	1.46
58822127--58822189	32	2.0	32	84	6	83	33	9	19	38	1.84
58822329--58822367	19	2.0	20	85	14	55	56	7	0	35	1.28
58822342--58822393	17	2.9	18	82	8	61	53	1	0	44	1.11
58825066--58825104	18	2.2	17	86	13	53	33	0	20	46	1.51
58825209--58825237	8	3.6	8	100	0	58	24	13	27	34	1.93
58825324--58825399	23	3.3	23	92	0	134	21	21	25	32	1.97
58826092--58826761	334	2.0	335	97	0	1281	35	11	18	34	1.86
58832738--58832776	18	2.2	17	86	13	53	33	0	20	46	1.51
58832881--58832909	8	3.6	8	100	0	58	24	13	27	34	1.93
58832995--58833070	23	3.3	23	96	0	143	21	21	26	31	1.98
58834671--58834703	15	2.1	16	88	5	50	30	0	3	66	1.06
58835411--58835687	113	2.5	112	80	3	297	33	18	22	25	1.96
58835600--58835775	75	2.3	75	81	1	210	33	15	22	28	1.95
58835690--58836306	115	5.4	115	78	5	608	32	18	22	26	1.97
58835690--58836306	114	5.4	113	77	7	536	32	18	22	26	1.97
58835697--58836299	229	2.6	227	81	3	600	33	18	21	26	1.97
58838733--58838886	70	2.2	70	97	2	290	48	7	14	28	1.72
58842357--58842383	1	27.0	1	100	0	54	0	100	0	0	0.00
58843987--58844032	18	2.8	18	84	15	64	0	30	41	28	1.56
58861341--58861406	27	2.5	26	78	11	62	15	3	3	78	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58861378--58861420	9	4.8	9	83	11	52	20	0	4	74	1.00
58861424--58861531	42	2.5	42	80	11	119	40	0	5	53	1.24
58861450--58861533	20	3.8	23	82	10	113	38	0	2	59	1.10
58861456--58861550	42	2.2	42	81	9	113	43	0	2	54	1.12
58861987--58862041	20	2.7	19	80	8	65	61	0	3	34	1.13
58862488--58862552	20	3.2	20	69	16	62	38	7	3	50	1.47
58862479--58862563	40	2.1	41	93	2	145	36	7	3	52	1.46
58862487--58862574	40	2.2	40	85	4	115	37	6	3	52	1.45
58862689--58862717	14	2.0	15	93	6	51	55	0	0	44	0.99
58864902--58865049	30	4.9	30	93	0	179	30	25	18	25	1.98
58864931--58865064	30	4.5	30	95	0	223	30	26	17	25	1.98
58868410--58868464	12	4.0	13	75	25	51	50	1	0	47	1.11
58868453--58868502	10	5.0	10	80	20	52	62	0	0	38	0.96
58868459--58868495	12	3.5	11	86	13	51	64	0	0	35	0.94
58868467--58868494	12	2.3	12	100	0	56	71	0	0	28	0.86
58868460--58868508	22	2.2	23	86	13	68	65	2	0	32	1.04
58868466--58868513	22	2.2	22	82	14	55	68	2	0	29	1.01
58868530--58868609	24	3.3	24	87	5	90	57	2	0	40	1.12
58868551--58868599	14	3.9	14	72	22	54	57	4	0	38	1.18
58868565--58868643	10	7.2	10	74	20	52	59	3	0	36	1.16
58868534--58868633	24	4.2	23	78	15	89	59	4	0	37	1.17
58868542--58868598	13	4.8	12	74	23	50	54	3	0	42	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58868690--58868752	21	3.0	20	77	22	60	52	1	0	46	1.10
58868696--58868748	22	2.5	20	82	14	63	52	1	0	45	1.11
58868693--58868753	20	3.0	20	79	13	63	52	1	0	45	1.10
58868713--58868813	33	3.0	33	85	8	116	57	1	0	39	1.17
58868940--58868974	16	2.3	15	90	5	52	85	2	2	8	0.79
58869222--58869297	14	5.5	14	68	14	59	53	1	1	43	1.17
58869313--58869354	21	2.0	20	90	4	66	61	0	0	38	0.96
58869432--58869465	9	3.8	9	85	14	52	79	2	0	17	0.86
58869419--58869461	13	3.2	13	86	3	50	76	4	0	18	0.95
58869417--58869461	23	2.0	23	86	4	65	75	4	0	20	0.97
58869475--58869546	19	4.1	18	72	13	60	76	2	8	12	1.11
58890800--58890883	34	2.5	35	86	7	111	44	0	11	44	1.41
58890954--58891223	126	2.1	128	86	6	372	37	15	16	30	1.90
58894206--58894236	9	3.6	9	91	8	55	64	0	0	35	0.94
58894257--58894312	23	2.3	23	77	14	60	53	3	0	42	1.18
58894273--58894444	95	1.8	95	94	0	308	55	4	4	36	1.40
58894756--58894797	18	2.3	18	91	0	66	42	7	28	21	1.79
58895386--58895418	7	4.7	7	100	0	66	57	15	0	27	1.38
58895575--58895618	18	2.4	18	81	7	54	45	4	2	47	1.35
58897759--58897811	24	2.2	24	96	0	97	35	0	7	56	1.28
58899645--58899674	14	2.1	14	100	0	60	53	0	0	46	1.00
58903185--58903327	43	3.4	44	75	13	149	27	16	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58903205--58903280	38	2.0	38	84	5	100	25	15	19	39	1.91
58911025--58911320	9	34.9	9	64	21	106	32	2	19	45	1.64
58911038--58911122	25	3.4	25	83	6	118	34	0	18	47	1.49
58911153--58911177	13	1.9	13	100	0	50	36	0	16	48	1.46
58911136--58911179	22	2.0	21	91	4	70	36	0	15	47	1.46
58911228--58911270	16	2.7	16	88	0	59	30	0	23	46	1.52
58911247--58911327	25	3.2	25	76	1	90	29	3	20	45	1.69
58911313--58911480	32	5.2	31	70	17	110	37	0	14	47	1.45
58911394--58911465	36	2.0	36	86	5	101	38	0	11	50	1.38
58911332--58911538	96	2.2	94	91	2	324	36	0	14	48	1.45
58911432--58911482	11	4.7	11	83	13	61	39	0	13	47	1.43
58911396--58911460	12	5.5	12	78	10	62	40	0	9	50	1.34
58911443--58911484	20	2.0	21	90	4	68	35	0	16	47	1.47
58911544--58911610	19	3.3	18	80	17	62	53	2	1	41	1.25
58911555--58911610	21	2.6	22	80	8	71	57	1	1	39	1.20
58914244--58914310	20	3.2	21	75	14	59	49	0	7	43	1.31
58914317--58914360	21	2.2	20	88	12	63	13	6	0	79	0.92
58915331--58915466	63	2.1	63	93	1	227	48	21	0	30	1.50
58915264--58915447	89	2.1	89	79	7	194	48	19	1	30	1.56
58915561--58915593	14	2.3	15	94	5	59	36	33	0	30	1.58
58915979--58916251	41	6.7	41	79	3	273	30	21	22	26	1.99
58915992--58916223	81	2.9	81	83	2	261	31	20	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58916290--58916383	39	2.4	40	82	5	111	29	19	19	31	1.96
58920759--58920788	15	2.1	14	93	6	51	6	20	6	66	1.38
58921422--58921467	24	1.9	24	82	8	58	56	4	6	32	1.45
58925473--58925503	2	15.5	2	100	0	62	51	0	0	48	1.00
58929836--58929868	16	2.0	17	94	5	59	36	0	0	63	0.95
58931346--58931372	10	2.7	10	100	0	54	11	51	18	18	1.74
58932244--58932379	72	1.9	72	93	0	236	23	29	12	34	1.92
58932247--58932414	72	2.3	72	84	2	203	25	27	13	33	1.93
58932523--58932566	21	2.1	21	86	0	61	25	34	2	38	1.68
58932269--58932622	194	1.8	193	88	1	548	26	26	13	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226