genome.fa.s24.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  119  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36893215--36893281	30	2.2	30	80	12	75	22	26	14	35	1.93
36896824--36896858	16	2.2	16	89	0	52	57	5	0	37	1.23
36897002--36897056	4	13.8	4	77	11	51	0	25	0	74	0.82
36897014--36897056	9	4.8	9	86	11	61	0	20	0	79	0.74
36899250--36899300	21	2.4	21	80	3	57	31	3	9	54	1.51
36901212--36901263	27	1.9	27	88	7	79	46	11	3	38	1.59
36908395--36908431	15	2.4	16	82	8	51	70	0	2	27	1.01
36908443--36908494	26	2.0	26	85	7	70	51	5	9	32	1.58
36921407--36921468	31	2.0	31	100	0	124	38	6	12	41	1.69
36942074--36942326	128	2.0	128	94	0	443	30	25	12	31	1.93
36942805--36942876	31	2.3	31	90	4	110	37	9	13	38	1.78
36966447--36967048	301	2.0	301	96	0	1096	33	15	14	35	1.89
36967586--36967631	14	3.2	14	81	3	56	56	8	2	32	1.42
36974206--36974253	23	2.1	23	92	0	78	29	4	8	58	1.46
36980129--36980277	42	3.5	42	77	9	151	27	18	24	28	1.98
36983693--36983991	124	2.5	119	84	4	384	29	16	7	46	1.74
36986964--36987147	51	3.6	51	78	5	194	30	13	23	33	1.92
36986964--36987046	26	3.2	26	65	21	66	32	12	22	32	1.91
36986963--36987147	101	1.8	102	85	3	266	30	12	23	32	1.92
36990767--36990803	9	4.1	9	92	0	65	29	10	13	45	1.77
36990847--36990889	9	4.7	9	82	2	50	34	18	13	32	1.90
36990847--36990889	18	2.3	18	92	4	68	34	18	13	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36991269--36991298	5	6.0	5	100	0	60	20	0	0	80	0.72
36991932--36992093	82	2.0	82	93	0	279	18	16	20	43	1.88
36997041--36997093	25	2.1	25	92	0	88	26	11	37	24	1.89
37002325--37002382	24	2.4	24	85	2	71	18	22	17	41	1.90
37002361--37002424	25	2.6	24	75	7	67	20	26	21	31	1.98
37004205--37004268	30	2.1	30	82	5	76	37	4	23	34	1.76
37004606--37004749	50	2.9	50	87	1	200	25	22	31	20	1.98
37004611--37004846	50	4.7	50	80	1	188	27	20	27	24	1.99
37004617--37004797	100	1.8	100	81	0	227	25	20	29	23	1.99
37009326--37009364	20	2.0	20	89	0	60	48	12	10	28	1.74
37009348--37009387	14	2.9	14	84	0	53	42	17	7	32	1.77
37015092--37015310	25	8.8	25	71	13	150	34	19	25	21	1.96
37015133--37015304	74	2.3	73	78	7	177	33	19	26	20	1.96
37023413--37023464	3	17.7	3	82	11	63	1	26	1	69	1.10
37031854--37031904	22	2.3	22	83	12	61	80	5	7	5	1.02
37042635--37042678	21	2.1	21	95	0	79	36	11	15	36	1.84
37055307--37055343	16	2.3	16	95	0	65	59	18	5	16	1.55
37055709--37055766	21	2.5	25	75	21	79	29	10	31	29	1.90
37056842--37056871	14	2.1	14	93	0	51	16	43	0	40	1.48
37061453--37061507	29	2.0	27	82	13	67	61	10	12	14	1.56
37063437--37063487	21	2.4	22	83	6	61	7	21	1	68	1.25
37063449--37063509	21	2.9	21	76	16	63	6	21	0	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37067989--37068193	89	2.3	90	80	5	220	26	18	10	43	1.83
37068973--37069023	27	1.9	26	84	11	68	31	5	0	62	1.19
37076242--37076279	19	2.1	18	85	14	51	42	0	0	57	0.98
37078402--37078505	20	5.3	20	69	7	79	12	30	18	38	1.88
37078388--37078516	39	3.3	40	85	3	190	15	29	17	37	1.90
37079002--37079026	13	1.9	13	100	0	50	20	0	32	48	1.50
37080786--37080854	22	3.0	22	71	8	66	36	17	10	36	1.84
37080786--37080867	22	3.6	22	72	6	65	36	18	10	34	1.86
37096113--37096155	7	6.1	7	91	0	59	18	2	0	79	0.85
37096101--37096152	22	2.4	22	80	6	61	25	1	0	73	0.94
37099883--37099955	23	3.2	22	78	5	76	13	17	24	43	1.86
37108733--37108788	27	2.1	27	100	0	112	44	10	17	26	1.82
37109064--37109239	57	3.1	56	81	6	192	45	5	19	29	1.73
37124451--37124541	24	3.7	25	65	15	64	59	0	1	39	1.05
37125620--37125749	66	2.0	66	92	0	215	33	10	6	50	1.62
37125624--37125729	32	3.2	32	65	15	81	34	7	6	50	1.57
37139622--37139727	40	2.7	40	86	1	142	29	18	24	27	1.98
37139656--37139735	39	2.0	39	85	4	106	32	21	22	23	1.98
37139783--37140094	41	7.6	41	87	1	430	20	17	30	31	1.96
37142703--37142741	21	1.9	21	89	5	62	43	2	20	33	1.65
37145211--37145322	57	2.0	57	98	0	215	32	8	12	47	1.70
37145604--37145650	24	2.0	24	86	0	67	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37147400--37147432	16	2.0	17	88	5	50	57	3	15	24	1.52
37150940--37151038	23	4.3	23	88	0	144	29	23	22	25	1.99
37152424--37152477	25	2.2	25	86	6	74	38	18	22	20	1.93
37152564--37152635	24	3.0	24	81	4	90	37	15	27	19	1.92
37156155--37156220	23	2.8	24	83	4	89	19	22	4	53	1.64
37156192--37156326	40	3.4	40	91	3	211	22	23	4	49	1.68
37156278--37156316	15	2.5	16	87	4	53	20	25	2	51	1.60
37160821--37160860	20	2.1	18	86	13	53	57	2	15	25	1.50
37162491--37162541	26	2.0	26	84	7	68	7	11	25	54	1.63
37162661--37162725	25	2.5	26	92	2	105	27	20	26	26	1.99
37178706--37178742	9	4.1	9	92	0	65	45	13	10	29	1.77
37178784--37178845	30	2.1	30	90	0	97	19	37	0	43	1.51
37178956--37179015	30	2.0	31	83	9	79	20	38	0	41	1.52
37180136--37180172	18	2.1	18	89	0	56	45	13	13	27	1.81
37182108--37182144	18	2.0	19	94	5	67	35	5	27	32	1.79
37185743--37186011	35	7.9	34	84	6	325	40	18	22	18	1.91
37185743--37186011	67	4.0	67	89	3	348	40	18	22	18	1.91
37185753--37186011	102	2.6	102	92	1	425	39	18	23	18	1.92
37186310--37186343	13	2.5	13	95	4	59	44	8	5	41	1.60
37186419--37186452	13	2.5	13	95	4	59	41	5	8	44	1.60
37197692--37197735	21	2.1	21	87	8	63	22	2	4	70	1.17
37198448--37198482	18	1.9	18	88	0	52	0	28	2	68	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37217723--37217769	22	2.2	21	84	3	58	36	31	12	19	1.89
37219355--37219461	34	3.2	33	80	6	117	43	0	14	41	1.51
37219544--37219935	123	3.2	123	80	7	434	38	16	16	28	1.91
37224259--37224298	21	1.9	21	84	0	53	45	37	10	7	1.66
37235114--37235162	24	1.9	26	88	12	75	67	0	2	30	1.02
37240020--37240069	16	3.1	16	91	0	73	30	4	32	34	1.76
37240023--37240076	16	3.3	16	86	2	63	33	5	31	29	1.80
37240282--37240336	25	2.2	25	84	9	69	52	1	0	45	1.11
37240467--37240628	47	3.6	46	70	25	139	48	2	3	46	1.31
37242360--37242407	23	2.1	23	100	0	96	58	12	8	20	1.60
37250825--37250852	6	4.7	6	100	0	56	0	28	17	53	1.44
37250943--37250994	23	2.3	22	80	9	59	11	36	7	44	1.70
37251070--37251126	30	1.9	30	96	0	105	22	24	12	40	1.88
37261914--37262097	41	4.5	40	82	2	206	22	30	16	30	1.96
37261912--37262097	82	2.3	82	83	1	239	22	30	16	31	1.96
37262374--37262409	14	2.6	14	91	8	56	19	8	16	55	1.66
37263558--37264540	16	61.3	17	65	19	313	45	15	3	34	1.64
37263627--37264507	9	96.6	9	66	18	212	45	15	3	34	1.65
37263563--37263720	82	1.9	82	89	2	246	45	16	3	34	1.63
37263663--37264453	46	17.8	46	67	19	193	46	15	4	34	1.65
37263581--37264365	128	6.2	128	77	12	739	45	15	4	34	1.65
37263645--37263932	65	4.5	64	74	13	245	46	16	3	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37263653--37264466	257	3.2	254	94	4	1358	46	15	4	34	1.65
37263657--37264109	239	1.9	240	97	1	856	45	15	4	34	1.66
37264133--37264213	21	3.7	21	72	18	74	49	12	2	35	1.54
37264281--37264492	46	4.8	46	74	15	187	46	15	3	33	1.64
37264390--37264467	21	3.5	21	69	19	59	48	12	3	34	1.60
37264206--37264482	83	3.4	80	81	9	272	46	15	3	34	1.64
37264707--37264899	9	22.8	9	76	12	185	45	21	1	31	1.61
37264707--37264819	34	3.3	34	75	14	124	46	23	0	30	1.52
37264733--37264899	34	4.9	34	77	10	125	45	20	1	31	1.62
37264727--37264895	50	3.3	50	80	4	171	46	21	1	30	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226