genome.fa.s24.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  161  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49817408--49817442	17	2.1	17	88	0	52	37	8	0	54	1.31
49817600--49817657	31	1.9	31	85	3	82	32	3	5	58	1.37
49818611--49818636	13	2.0	13	100	0	52	30	7	7	53	1.57
49819427--49819451	8	3.1	8	100	0	50	64	0	0	36	0.94
49821540--49821565	9	2.9	9	100	0	52	53	0	23	23	1.46
49824148--49824173	2	13.0	2	100	0	52	50	0	50	0	1.00
49849356--49849800	220	2.0	219	88	2	651	30	12	19	37	1.88
49857677--49857709	13	2.4	14	90	5	50	33	3	18	45	1.65
49859687--49859749	24	2.9	21	71	15	56	58	11	0	30	1.32
49859936--49859982	3	15.7	3	82	8	60	65	2	2	29	1.15
49861101--49861372	44	6.2	44	88	4	329	25	26	19	28	1.98
49861101--49861372	88	3.1	88	86	5	372	25	26	19	28	1.98
49861101--49861370	132	2.0	132	86	5	377	25	26	18	28	1.98
49861130--49861389	44	5.9	44	90	2	362	25	26	19	28	1.99
49861440--49861541	44	2.3	44	78	6	118	25	23	17	33	1.96
49861474--49861667	88	2.2	88	79	2	192	24	24	22	28	1.99
49868009--49868085	31	2.5	31	80	0	91	36	5	22	36	1.76
49869750--49869803	25	2.2	25	100	0	108	35	18	16	29	1.93
49870925--49871026	46	2.2	45	84	1	123	48	17	6	27	1.73
49874032--49874367	84	4.0	84	93	0	564	16	19	27	35	1.94
49874397--49874564	84	2.0	84	96	0	309	16	19	29	35	1.94
49874200--49875062	198	4.4	198	93	1	1410	20	18	26	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49874593--49874760	84	2.0	84	92	0	282	17	18	28	35	1.93
49874791--49874958	84	2.0	84	95	0	300	16	20	28	34	1.94
49874875--49875231	104	3.2	113	83	9	443	24	17	26	31	1.97
49875824--49876744	391	2.4	385	90	4	1453	30	4	22	42	1.74
49880826--49880896	21	3.4	21	82	7	90	32	16	46	4	1.67
49882348--49882381	2	17.0	2	100	0	68	50	0	50	0	1.00
49885287--49885336	17	2.9	17	77	11	57	54	6	4	36	1.44
49885560--49885606	22	2.1	22	92	7	78	25	10	8	55	1.62
49889322--49889373	27	1.9	27	84	7	70	38	15	21	25	1.92
49893728--49893862	68	2.0	68	86	7	193	48	5	3	42	1.43
49895483--49895513	16	1.9	16	93	0	53	70	9	9	9	1.33
49906454--49906549	48	2.0	48	100	0	192	20	16	25	37	1.93
49907512--49907554	18	2.3	18	88	4	68	58	4	0	37	1.19
49907511--49907576	19	3.3	19	83	14	71	54	7	0	37	1.29
49907658--49907734	35	2.2	35	95	2	136	45	6	5	42	1.52
49907957--49908208	125	2.0	123	88	3	371	29	15	13	41	1.85
49912151--49912201	24	2.2	24	89	3	77	58	7	3	29	1.44
49913449--49913504	23	2.4	23	100	0	112	32	14	10	42	1.80
49917797--49917835	3	13.0	3	83	0	51	69	0	2	28	1.02
49917932--49917994	24	2.7	23	84	13	85	57	7	1	33	1.37
49917935--49918000	3	22.3	3	73	14	57	60	6	1	31	1.30
49918580--49918618	16	2.4	16	87	8	53	15	2	2	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49919834--49919985	72	2.1	73	86	6	211	37	23	16	23	1.93
49919860--49920087	120	1.9	123	89	4	363	35	23	16	25	1.95
49920052--49920330	144	1.9	144	80	4	321	33	21	15	29	1.94
49920196--49920429	88	2.6	87	83	3	261	35	22	15	26	1.94
49920339--49920483	75	1.9	75	91	0	236	32	20	18	28	1.96
49920501--49920673	68	2.5	70	85	4	210	32	21	14	30	1.93
49933318--49933371	23	2.5	22	87	6	74	59	7	1	31	1.36
49933321--49933391	3	23.3	3	74	8	63	61	5	1	30	1.27
49933855--49933892	18	2.1	18	90	0	58	50	0	50	0	1.00
49933856--49933888	11	2.9	12	91	8	52	48	0	51	0	1.00
49933988--49934024	16	2.4	16	90	4	58	13	2	2	81	0.92
49940794--49940824	16	1.9	16	93	0	53	9	9	9	70	1.33
49942939--49942978	21	2.0	21	90	9	66	40	22	15	22	1.91
49953130--49953218	44	2.2	40	75	16	99	16	20	7	55	1.66
49953142--49953233	44	2.1	44	93	0	157	18	16	9	55	1.68
49953155--49953224	22	3.2	22	64	22	56	18	17	8	55	1.66
49953558--49953651	40	2.3	40	92	0	152	48	9	14	26	1.75
49962986--49963013	14	2.0	14	100	0	56	35	21	14	28	1.92
49965524--49965564	19	2.2	18	91	4	64	65	4	2	26	1.25
49965550--49965649	28	3.5	28	80	10	89	57	3	1	39	1.21
49965576--49965628	19	2.8	18	80	5	61	56	5	1	35	1.34
49965542--49965628	9	9.3	9	75	10	77	58	4	1	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49966495--49966795	9	31.3	9	69	19	132	33	1	6	58	1.34
49966549--49966646	19	4.9	19	78	15	92	32	3	8	56	1.44
49966603--49966796	104	1.9	105	82	13	249	32	0	6	60	1.26
49977141--49977194	26	2.1	26	100	0	108	38	3	12	44	1.61
49977201--49977242	17	2.5	17	80	7	50	45	2	0	52	1.13
49977839--49977924	43	2.0	43	100	0	172	37	16	18	27	1.92
49978332--49978405	12	6.2	12	67	17	55	5	37	0	56	1.22
49978365--49979383	96	10.7	96	89	5	1404	5	33	2	58	1.35
49978569--49978624	12	4.4	12	74	12	58	0	30	3	66	1.09
49978665--49978816	12	11.4	12	70	19	72	3	31	2	61	1.28
49978366--49979383	288	3.6	288	90	5	1572	5	33	2	58	1.35
49979322--49979386	27	2.4	28	86	2	87	3	33	3	60	1.28
49979553--49979597	12	3.8	13	77	16	53	4	31	2	62	1.27
49979755--49979811	25	2.5	22	81	16	55	3	35	3	57	1.33
49981947--49981977	2	16.0	2	93	6	55	48	0	0	51	1.00
49982599--49982635	19	2.0	18	89	5	56	51	8	5	35	1.55
49983592--49983622	15	2.0	16	93	6	55	64	0	0	35	0.94
49986537--49986565	6	4.8	6	100	0	58	31	0	0	68	0.89
49991774--49991823	4	13.0	4	89	8	59	18	0	32	50	1.47
49998521--49998568	20	2.4	20	89	6	71	33	33	2	31	1.70
49999917--49999956	20	2.0	20	95	0	71	45	10	7	37	1.66
50003150--50003202	23	2.3	23	96	0	97	37	7	16	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50006346--50006402	25	2.3	25	84	3	71	28	24	22	24	2.00
50008011--50008044	16	2.1	16	88	0	50	41	2	20	35	1.68
50011363--50011476	40	2.9	39	75	5	122	41	26	17	14	1.88
50013098--50013141	15	2.8	15	82	6	52	65	4	0	29	1.12
50013275--50013304	9	3.4	9	95	4	53	26	0	0	73	0.84
50016136--50016203	29	2.3	29	85	5	93	27	30	13	27	1.94
50016024--50016352	174	1.9	175	91	1	545	30	24	14	30	1.95
50016305--50016383	29	2.7	30	82	13	110	29	30	15	25	1.96
50024277--50024344	29	2.3	29	85	5	93	27	30	13	27	1.94
50024446--50024524	29	2.7	30	82	13	110	29	30	15	25	1.96
50030372--50030400	14	2.0	15	93	6	51	65	0	27	6	1.18
50033490--50033537	25	2.0	24	84	8	62	37	8	8	45	1.64
50035045--50035254	39	5.4	39	84	5	210	32	29	18	19	1.95
50035222--50035277	23	2.4	23	81	0	76	37	35	14	12	1.84
50041130--50041181	24	2.2	24	89	0	77	55	9	1	32	1.43
50043097--50043148	24	2.2	24	89	0	77	55	9	1	32	1.43
50044576--50044603	12	2.3	12	100	0	56	64	0	0	35	0.94
50046155--50046206	26	2.0	26	92	0	86	26	11	1	59	1.42
50049673--50049845	21	8.3	21	81	1	188	46	15	20	17	1.83
50049695--50049846	42	3.6	42	89	0	214	47	13	21	17	1.82
50057723--50057830	25	4.3	25	85	2	101	36	18	24	21	1.95
50057691--50057830	50	2.8	50	78	5	133	35	20	22	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50061790--50061854	32	2.0	32	93	0	112	29	33	9	27	1.88
50063891--50063938	24	2.0	24	95	0	87	60	4	10	25	1.47
50068577--50068629	21	2.5	21	84	0	61	30	32	9	28	1.88
50072564--50072603	21	1.9	21	94	0	71	17	5	0	77	0.94
50076868--50076925	27	2.2	27	87	3	82	29	8	1	60	1.36
50078372--50078419	22	2.2	22	84	0	60	29	29	0	41	1.56
50084556--50084606	26	2.0	26	88	0	75	37	9	15	37	1.81
50087954--50087989	18	2.0	18	100	0	72	38	5	11	44	1.63
50092798--50092941	68	2.1	69	84	3	184	52	3	2	41	1.33
50097793--50097871	37	2.1	37	86	9	108	24	30	20	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226