genome.fa.s24.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  179  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54633153--54633570	130	3.3	130	87	10	644	41	5	5	47	1.50
54633344--54633392	22	2.2	23	88	3	73	48	4	4	42	1.40
54633038--54633570	249	2.1	253	95	2	959	41	5	6	47	1.51
54633362--54633530	28	5.8	28	71	19	116	41	4	5	47	1.48
54634385--54634418	14	2.3	15	90	5	52	20	26	0	52	1.46
54634872--54634934	31	2.0	31	96	0	117	47	6	19	26	1.73
54636155--54636247	17	5.9	17	71	14	74	37	4	6	51	1.47
54636148--54636204	30	1.9	30	92	0	96	33	7	3	56	1.43
54636148--54636200	13	3.8	13	77	18	52	33	7	3	54	1.46
54636197--54636230	16	2.1	16	100	0	68	47	0	5	47	1.26
54636196--54636233	16	2.5	15	91	8	67	42	0	5	52	1.24
54636274--54636396	15	7.9	15	66	20	65	52	15	1	30	1.53
54636297--54636354	21	2.8	20	82	7	71	43	18	3	34	1.68
54636351--54636396	7	6.6	7	78	16	51	60	10	0	28	1.30
54636392--54636468	21	3.7	21	79	10	68	44	20	2	32	1.66
54636450--54636950	9	58.3	9	66	19	180	46	18	2	32	1.62
54636462--54636527	25	2.6	25	81	9	89	46	19	1	31	1.59
54636450--54636568	41	2.9	40	83	6	139	47	17	1	32	1.58
54636505--54636672	34	4.7	34	68	12	88	48	17	2	31	1.60
54636496--54636948	16	27.0	16	65	20	121	46	18	2	32	1.62
54636683--54636896	34	6.3	34	75	10	188	44	20	3	31	1.67
54636684--54636884	69	2.9	69	91	2	307	43	20	3	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54636840--54636921	25	3.3	25	85	0	110	47	14	2	35	1.58
54640675--54640824	66	2.3	66	87	2	212	40	18	26	16	1.90
54640827--54640885	21	2.8	21	87	5	84	33	16	44	5	1.70
54641233--54641518	43	6.7	42	82	4	313	19	19	31	29	1.97
54644569--54644607	19	2.1	19	100	0	78	46	10	17	25	1.80
54647126--54647172	21	2.2	21	88	0	67	36	12	46	4	1.62
54648414--54648472	30	2.0	30	93	0	100	27	23	18	30	1.98
54648928--54649281	182	1.9	182	81	6	430	35	15	21	27	1.94
54649118--54649680	114	4.9	114	75	11	422	31	19	22	27	1.97
54649115--54649680	229	2.5	226	80	7	577	31	18	21	27	1.97
54650005--54650070	22	3.0	21	80	6	69	12	0	43	43	1.41
54650022--54650061	15	2.7	15	88	3	55	15	0	40	45	1.46
54651626--54651654	14	2.1	14	93	6	51	62	0	6	31	1.22
54651917--54651961	22	2.0	24	86	8	67	60	4	4	31	1.37
54651942--54651985	17	2.4	18	81	7	54	61	0	4	34	1.16
54652695--54652730	15	2.4	15	90	9	56	5	13	5	75	1.17
54653224--54653308	44	1.9	44	81	13	104	31	25	20	22	1.98
54653784--54654055	45	6.1	45	69	11	186	22	23	26	27	2.00
54653776--54654058	89	3.2	89	92	0	449	22	23	27	26	2.00
54653870--54654009	44	3.2	44	69	6	147	22	21	28	27	1.99
54655806--54655842	10	3.6	10	89	7	56	0	10	5	83	0.79
54655789--54655820	16	1.9	17	93	6	57	3	6	6	84	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54658124--54658160	19	1.9	19	94	0	65	32	18	18	29	1.96
54660178--54660212	18	2.0	17	88	5	52	45	0	0	54	0.99
54660071--54660354	120	2.4	120	90	2	446	44	1	4	48	1.34
54660298--54660332	18	2.0	17	88	5	52	45	0	0	54	0.99
54660298--54660352	15	3.4	16	80	16	53	47	0	1	50	1.11
54660568--54660635	16	4.2	16	96	0	127	38	35	0	26	1.57
54660881--54660916	15	2.4	15	90	9	56	5	13	5	75	1.17
54661553--54661643	44	2.1	44	91	0	146	25	30	9	34	1.88
54663278--54663358	35	2.3	35	95	0	144	33	4	3	58	1.37
54663376--54663431	16	3.3	17	80	9	78	37	16	3	42	1.65
54663381--54663453	34	2.3	33	86	11	100	41	16	2	39	1.63
54663523--54663723	22	9.3	22	65	23	65	48	18	1	31	1.59
54663654--54663708	12	4.8	12	84	4	69	52	14	1	30	1.52
54663647--54663715	24	3.0	24	83	8	83	53	15	1	28	1.51
54663699--54664120	95	4.5	95	91	5	684	50	19	2	27	1.59
54664040--54664079	12	3.3	12	100	0	80	52	15	0	32	1.43
54664140--54664205	19	3.6	19	78	19	86	50	18	1	30	1.56
54663671--54664205	181	2.9	186	79	9	601	50	18	2	27	1.60
54664140--54664277	9	15.8	9	76	17	114	47	21	1	30	1.60
54664170--54664277	16	6.9	16	75	17	86	47	21	1	29	1.61
54664174--54664277	25	4.1	25	81	4	136	46	22	1	29	1.63
54666455--54666571	41	2.8	41	89	3	164	22	22	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54666918--54666952	15	2.4	15	90	4	54	20	0	40	40	1.52
54666963--54667026	23	2.8	23	83	4	85	23	1	40	34	1.64
54666963--54667025	7	8.2	8	77	11	53	22	1	41	34	1.63
54667251--54667288	14	2.7	15	88	12	62	28	0	28	42	1.56
54667031--54667768	298	2.4	299	86	5	988	30	2	25	40	1.70
54667538--54667582	14	3.1	14	90	6	72	26	2	40	31	1.68
54667605--54667653	14	3.4	14	81	13	55	22	4	44	28	1.71
54671161--54671201	2	20.5	2	100	0	82	0	51	0	48	1.00
54672529--54672865	43	7.8	43	83	1	388	24	19	29	26	1.99
54676452--54676505	21	2.6	21	90	0	81	37	20	38	3	1.70
54676494--54676532	12	3.2	12	81	0	51	41	12	38	7	1.72
54677024--54677122	42	2.3	42	84	1	117	26	19	24	30	1.98
54680192--54680246	19	2.8	19	77	5	65	49	3	0	47	1.19
54681869--54681905	17	2.1	17	90	5	56	72	2	0	24	0.97
54690420--54690482	26	2.4	27	97	2	119	41	9	0	49	1.35
54690542--54690641	27	3.7	27	80	7	114	25	25	33	17	1.96
54690725--54690764	11	3.7	11	83	6	55	70	2	27	0	1.01
54690724--54690762	21	1.9	20	89	5	60	69	2	28	0	1.02
54690893--54690933	3	13.7	3	100	0	82	0	0	31	68	0.90
54696724--54696779	27	2.1	27	96	0	103	8	33	14	42	1.77
54697490--54697652	40	4.1	40	73	17	126	0	30	0	69	0.89
54697527--54697688	32	4.9	32	73	18	111	0	32	0	66	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54697489--54697652	72	2.2	73	89	8	246	0	31	0	68	0.89
54697549--54697680	10	13.6	10	71	18	68	0	33	0	65	0.98
54697633--54697685	26	2.0	27	88	7	81	1	35	0	62	1.06
54697724--54697791	27	2.5	27	97	0	127	17	25	29	27	1.97
54697861--54697923	28	2.4	27	92	7	103	47	0	11	41	1.39
54706229--54706280	24	2.2	24	89	0	77	53	7	3	34	1.48
54711205--54711256	24	2.1	24	89	7	77	48	5	5	40	1.51
54712300--54712560	103	2.6	101	77	7	242	26	22	17	33	1.96
54713663--54713696	10	3.4	10	83	0	50	47	2	2	47	1.32
54714217--54714256	21	1.9	21	84	0	53	32	5	12	50	1.62
54719268--54719312	24	1.9	24	90	4	74	15	11	11	62	1.55
54723707--54723754	26	1.9	26	84	16	66	35	12	16	35	1.87
54723707--54723754	25	1.9	24	87	8	69	35	12	16	35	1.87
54733384--54733684	163	1.9	157	80	8	345	31	16	11	41	1.83
54746781--54746815	18	1.9	18	88	0	52	31	0	2	65	1.07
54747268--54747317	24	2.1	24	84	0	64	48	10	6	36	1.61
54752289--54752345	24	2.4	24	85	5	71	47	10	5	36	1.61
54752301--54752352	24	2.2	24	85	0	68	50	7	3	38	1.50
54760775--54760836	11	5.1	11	75	24	54	82	6	11	0	0.84
54765124--54765211	27	3.5	25	80	12	83	34	18	27	20	1.96
54765163--54765223	27	2.3	27	88	5	90	34	18	24	22	1.96
54765147--54765230	25	3.3	27	78	17	81	33	17	25	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54788198--54788245	23	2.1	22	88	3	69	14	4	2	79	0.98
54788295--54788337	21	2.0	22	90	4	70	9	27	6	55	1.57
54790120--54790144	10	2.5	10	100	0	50	68	0	8	24	1.16
54794528--54794644	42	2.8	42	79	7	121	31	26	16	25	1.96
54794528--54794734	44	4.8	43	76	12	192	30	27	17	24	1.97
54800228--54800274	22	2.1	23	84	7	62	25	2	48	23	1.62
54800603--54800916	106	3.0	106	93	1	517	29	12	11	46	1.77
54800703--54801380	251	2.7	249	85	9	895	28	12	11	47	1.77
54800953--54801156	107	1.9	107	93	0	354	30	10	9	49	1.70
54801349--54801387	15	2.7	15	84	11	55	23	0	5	71	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226