genome.fa.s24.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  138  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42850466--42850500	13	2.8	13	86	4	54	34	2	5	57	1.37
42852905--42852990	45	1.9	45	85	0	118	12	25	1	60	1.40
42852967--42853038	29	2.4	31	86	9	96	6	25	2	65	1.31
42853918--42853952	13	2.8	13	95	4	63	34	8	5	51	1.56
42861878--42862940	524	2.0	524	98	0	2076	35	12	20	31	1.90
42867791--42867949	79	2.0	79	97	0	300	19	13	10	56	1.66
42868242--42868273	15	2.1	15	94	0	55	0	21	0	78	0.76
42875295--42875326	15	2.1	15	94	0	55	0	21	0	78	0.76
42878843--42878961	36	3.3	36	86	0	148	13	13	34	38	1.84
42881108--42881161	20	2.7	20	82	0	63	24	20	18	37	1.94
42881108--42881181	30	2.5	30	86	8	98	21	20	18	39	1.93
42881108--42881172	20	3.2	20	71	16	53	23	21	16	38	1.93
42883871--42884007	12	10.6	12	70	14	58	68	2	18	10	1.28
42883897--42883979	18	4.4	18	73	7	67	72	3	18	6	1.20
42883893--42883979	6	14.2	6	70	8	59	72	3	18	5	1.19
42883943--42884028	28	3.1	27	82	9	95	68	1	18	11	1.26
42885857--42885910	20	2.7	20	82	0	63	24	20	18	37	1.94
42885857--42885930	30	2.5	30	86	8	98	21	20	18	39	1.93
42885857--42885921	20	3.2	20	71	16	53	23	21	16	38	1.93
42888810--42888876	29	2.3	29	85	10	84	40	7	26	25	1.82
42888864--42888994	30	4.4	30	79	10	108	40	12	25	21	1.89
42888895--42889024	58	2.2	59	84	2	172	39	14	24	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42888810--42889025	88	2.5	88	79	7	242	39	12	24	22	1.89
42893891--42893960	29	2.4	29	87	0	104	24	27	11	37	1.89
42896115--42896199	30	2.8	30	72	13	84	38	15	21	24	1.92
42898693--42898736	22	2.0	22	90	0	70	27	36	2	34	1.70
42905122--42905176	15	3.8	15	85	2	69	1	21	1	74	1.01
42907193--42907238	14	3.5	13	80	8	58	13	4	4	78	1.05
42907186--42907242	27	2.2	27	81	12	75	22	8	3	64	1.37
42913836--42913947	38	3.1	39	80	12	116	21	12	9	56	1.65
42917627--42917676	25	2.0	25	92	0	82	40	14	14	32	1.85
42919820--42919885	6	10.7	6	82	6	60	71	1	10	16	1.21
42919820--42919865	19	2.4	19	82	7	58	76	0	8	15	1.02
42922472--42922539	13	5.6	12	77	19	61	79	1	13	5	0.98
42922465--42922491	12	2.2	12	100	0	54	70	7	7	14	1.32
42922484--42922539	12	4.6	12	75	4	58	82	0	14	3	0.81
42922486--42922546	11	5.4	11	77	14	61	78	0	16	4	0.91
42931663--42931751	42	2.1	42	87	4	126	19	34	23	22	1.96
42936705--42936743	20	2.0	20	85	10	53	20	20	15	43	1.88
42938370--42938409	10	3.8	10	81	12	53	37	0	5	57	1.21
42945478--42945524	15	2.8	16	84	15	60	63	0	27	8	1.23
42952261--42952621	47	7.6	47	95	1	632	32	8	30	29	1.86
42952740--42952818	37	2.1	37	88	4	115	25	18	30	25	1.98
42954683--42954784	43	2.4	43	98	1	197	22	15	35	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42954766--42954840	29	2.6	29	89	4	107	26	16	32	25	1.96
42955165--42955282	40	3.0	40	83	6	141	26	19	24	29	1.98
42955174--42955316	40	3.6	40	81	0	133	25	20	27	26	1.99
42955121--42955303	80	2.3	82	76	5	196	24	22	26	26	2.00
42958877--42959283	47	8.6	47	90	4	638	32	8	29	28	1.87
42958878--42959283	189	2.1	190	95	0	742	32	8	30	29	1.88
42958877--42959283	142	2.9	143	90	3	637	32	8	29	28	1.87
42959404--42959482	37	2.1	37	88	4	115	25	18	30	25	1.98
42963320--42963367	25	1.9	24	84	16	62	58	8	12	20	1.60
42963877--42963981	55	1.9	55	82	0	129	29	26	20	22	1.99
42967753--42967829	20	3.8	20	77	6	93	12	24	18	44	1.85
42967754--42967832	40	2.0	40	94	0	140	12	24	18	44	1.85
42970888--42970932	22	2.0	22	91	0	72	40	26	4	28	1.75
42973263--42973323	30	2.0	30	100	0	122	32	22	16	27	1.96
42982491--42982520	15	2.0	15	93	0	51	26	10	30	33	1.89
42987644--42987745	52	1.9	53	84	2	134	29	8	23	38	1.85
42991454--42991505	23	2.2	24	83	10	72	1	26	1	69	1.10
42991453--42991506	9	5.3	10	74	25	51	1	25	1	70	1.07
42993639--42993683	9	4.9	9	79	15	56	17	6	22	53	1.67
42994283--42994461	85	2.1	85	97	0	340	37	8	27	26	1.85
42995726--42996322	47	12.6	47	92	2	842	33	8	28	28	1.87
42995726--42996322	96	6.3	94	90	2	851	33	8	28	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42995726--42996322	143	4.2	141	89	3	842	33	8	28	28	1.87
42996173--42996294	22	5.3	22	62	21	61	33	11	29	25	1.91
43001019--43001197	85	2.1	85	97	0	340	36	8	27	26	1.86
43002461--43002604	49	3.0	49	95	2	256	34	8	27	29	1.86
43002527--43002673	71	2.1	69	91	5	233	31	11	29	26	1.91
43002576--43002626	22	2.3	22	100	0	102	31	15	31	21	1.95
43002599--43002867	47	5.7	47	95	1	452	31	10	31	26	1.90
43002599--43002867	140	1.9	141	92	2	452	31	10	31	26	1.90
43006309--43006341	15	2.2	15	89	10	50	42	6	3	48	1.43
43009845--43009914	20	3.7	19	69	20	58	10	22	0	67	1.20
43009924--43009971	24	2.0	24	91	0	78	6	22	2	68	1.23
43012185--43012225	20	2.0	20	86	9	57	29	0	9	60	1.28
43014335--43014490	27	5.7	27	78	6	145	27	28	16	28	1.97
43014340--43014491	54	2.8	55	80	4	182	26	27	16	28	1.97
43020291--43020342	24	2.2	24	89	0	77	48	19	13	19	1.81
43022141--43022192	27	1.9	27	92	0	86	28	32	23	15	1.95
43022151--43022301	70	2.1	71	91	2	241	30	29	17	23	1.97
43022151--43022338	70	2.6	71	86	7	227	30	30	17	20	1.96
43022315--43022366	27	1.9	27	96	0	95	28	32	25	13	1.93
43022220--43022442	103	2.2	104	92	2	369	31	31	19	17	1.95
43023987--43024018	13	2.5	13	100	0	64	40	12	21	25	1.88
43029239--43029290	26	2.0	26	92	0	86	28	34	21	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43029251--43029401	72	2.1	71	90	2	232	30	29	16	23	1.96
43029414--43029462	25	2.0	25	95	0	89	30	32	24	12	1.92
43029320--43029539	102	2.1	103	90	3	345	31	30	19	18	1.95
43031174--43031217	19	2.2	20	84	11	56	59	9	2	29	1.41
43035987--43036021	18	1.9	18	88	0	52	20	0	37	42	1.52
43040120--43040220	49	2.1	49	90	0	157	29	9	12	47	1.74
43041286--43041318	14	2.3	15	89	5	50	39	24	18	18	1.92
43043549--43043754	29	7.1	29	71	7	157	22	25	13	37	1.91
43043547--43043754	87	2.4	87	88	2	310	23	25	13	37	1.91
43045905--43045963	27	2.3	25	77	13	66	18	28	13	38	1.89
43045988--43046101	28	4.2	26	71	17	63	24	20	17	37	1.93
43047088--43047388	102	3.0	101	93	1	503	26	17	24	31	1.97
43047288--43047498	75	2.8	74	88	2	323	26	17	25	31	1.97
43047325--43047461	42	3.5	42	71	17	148	26	16	24	32	1.96
43053431--43053463	12	2.6	13	90	4	50	48	3	6	42	1.43
43054529--43054581	27	2.0	26	92	3	88	20	20	30	28	1.98
43054529--43054756	102	2.2	101	89	2	357	24	20	25	29	1.99
43054629--43054680	27	1.9	27	92	0	86	19	23	30	26	1.98
43054660--43054867	33	5.7	33	68	21	112	25	19	25	30	1.98
43054656--43054865	75	2.8	75	94	0	366	24	19	25	30	1.98
43063930--43063992	22	3.0	22	84	13	87	49	20	0	30	1.49
43067554--43067655	28	3.6	28	79	7	116	33	21	15	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43067549--43067687	57	2.4	57	85	0	188	34	22	16	26	1.95
43067582--43067769	29	6.5	29	78	2	171	36	19	17	27	1.94
43067554--43067693	29	4.9	28	80	4	147	35	21	16	27	1.95
43067582--43067769	86	2.2	88	81	5	222	36	19	17	27	1.94
43069386--43069424	19	2.1	19	100	0	78	25	7	10	56	1.59
43073054--43073178	50	2.5	50	84	0	142	22	30	20	27	1.98
43073824--43073909	41	2.1	41	93	0	145	30	17	17	34	1.93
43075389--43075438	10	4.7	10	85	7	55	78	6	4	12	1.08
43075399--43075439	12	3.6	12	87	6	59	80	4	2	12	0.97
43075476--43075547	26	2.6	27	82	10	83	69	1	16	12	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226