genome.fa.s24.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  107  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33300910--33301068	28	5.7	28	76	7	99	33	16	17	32	1.92
33300963--33301098	28	4.9	28	74	10	100	33	17	17	30	1.94
33305355--33305712	112	3.2	112	88	0	527	34	14	24	26	1.94
33310653--33310760	28	3.9	28	77	9	96	34	15	18	31	1.92
33313460--33313485	9	2.9	9	100	0	52	30	11	11	46	1.76
33313478--33313516	20	2.0	20	94	0	69	15	17	12	53	1.72
33313481--33313527	20	2.3	20	85	0	58	12	21	14	51	1.76
33338285--33338456	85	2.0	85	98	0	335	37	16	18	27	1.92
33341014--33341145	57	2.3	58	86	2	187	48	8	18	25	1.75
33344052--33344352	163	1.8	163	92	0	503	41	23	4	30	1.76
33344925--33344972	20	2.5	19	80	9	53	29	0	12	58	1.35
33346485--33346554	33	2.1	33	100	0	140	54	11	2	31	1.51
33351157--33351224	35	1.9	35	96	0	127	51	2	16	29	1.59
33354541--33354570	12	2.5	12	94	0	51	56	6	13	23	1.60
33354549--33354587	20	2.0	20	94	0	69	58	2	15	23	1.49
33363927--33364003	36	2.2	35	80	2	82	27	9	25	37	1.86
33370781--33370817	18	2.0	19	89	5	58	5	43	0	51	1.24
33377611--33377653	19	2.3	19	84	15	54	46	0	23	30	1.52
33382980--33383017	20	2.0	20	94	5	60	52	0	2	44	1.14
33382985--33383028	20	2.2	20	84	8	54	54	4	4	36	1.41
33385341--33385403	31	2.0	31	100	0	126	49	12	19	19	1.79
33386532--33386568	19	1.9	19	89	10	58	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33390584--33390610	4	6.8	4	100	0	54	77	0	0	22	0.76
33397430--33397576	50	2.9	50	65	4	125	22	19	22	35	1.96
33400019--33400074	25	2.2	25	84	12	71	42	7	0	50	1.30
33401925--33401956	14	2.3	14	100	0	64	25	25	12	37	1.91
33410953--33410994	6	7.0	6	97	0	66	21	45	16	16	1.86
33414814--33414921	30	3.7	29	89	8	157	35	22	0	41	1.60
33414899--33414938	20	2.0	20	85	0	53	32	27	2	37	1.70
33415406--33415478	11	6.7	11	80	10	53	75	0	20	4	0.97
33415388--33415480	37	2.5	37	80	10	102	73	0	22	4	1.01
33415465--33415498	8	4.4	8	88	3	52	76	0	2	20	0.92
33415456--33415498	16	2.9	15	86	6	52	76	0	6	16	0.99
33415668--33415763	28	3.4	28	83	0	102	30	40	25	4	1.74
33419724--33419756	4	8.2	4	93	0	57	24	24	3	48	1.65
33426450--33427001	75	7.3	75	84	1	683	27	17	19	35	1.94
33427261--33427293	16	2.1	16	94	5	59	66	0	0	33	0.92
33427324--33427366	20	2.2	20	91	4	70	41	20	4	32	1.73
33427342--33427415	28	2.5	28	80	6	76	36	20	2	40	1.67
33427921--33427993	7	10.4	7	74	11	51	79	0	16	4	0.88
33427920--33427977	10	5.4	11	77	6	57	75	0	22	1	0.89
33427940--33427994	17	3.2	17	77	10	58	83	0	10	5	0.79
33428173--33428240	28	2.4	28	80	0	82	32	39	25	2	1.71
33428600--33428640	21	2.0	21	86	13	59	48	7	2	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33428976--33429191	113	1.9	112	87	5	319	28	18	16	36	1.93
33439075--33439130	28	2.0	28	96	0	103	8	42	26	21	1.82
33443487--33443519	17	1.9	17	100	0	66	27	30	18	24	1.98
33447297--33447345	25	2.0	24	84	7	64	32	8	8	51	1.61
33448602--33448638	17	2.2	18	90	9	60	70	0	21	8	1.13
33456977--33457010	18	1.9	18	94	5	61	29	5	0	64	1.17
33457872--33457932	23	2.5	24	77	17	72	24	11	11	52	1.70
33459320--33459626	120	2.6	120	82	0	353	35	16	26	21	1.95
33459333--33459618	40	7.2	40	82	3	288	36	16	25	21	1.94
33461035--33461072	20	2.0	20	94	5	69	26	10	0	63	1.27
33479234--33479647	206	2.0	206	90	0	659	36	19	10	33	1.86
33491644--33491677	17	2.0	17	100	0	68	17	35	5	41	1.74
33502721--33502919	43	4.7	41	77	10	186	22	15	26	36	1.93
33502721--33502957	85	2.8	84	86	0	303	23	15	25	35	1.94
33504296--33504336	21	1.9	22	90	5	66	51	12	0	36	1.40
33505033--33505086	26	2.1	26	100	0	108	31	25	7	35	1.84
33506399--33506453	26	2.1	26	86	0	74	18	18	23	40	1.91
33506550--33506621	33	2.2	33	87	5	101	26	25	20	27	1.99
33507857--33507912	21	2.7	21	94	0	94	35	30	14	19	1.91
33509631--33509679	3	16.3	3	91	8	82	2	32	0	65	1.04
33517709--33517756	22	2.2	22	82	14	55	72	10	16	0	1.10
33518115--33518158	23	1.9	24	90	9	74	54	2	20	22	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33518690--33518748	27	2.2	28	81	9	77	27	0	27	45	1.54
33519882--33519928	24	2.0	24	83	8	60	42	2	8	46	1.46
33521332--33521419	46	1.9	45	82	13	108	38	7	3	50	1.49
33522598--33522636	18	2.2	18	85	0	51	25	5	10	58	1.51
33529103--33529129	13	2.1	13	100	0	54	37	7	22	33	1.82
33532924--33533108	50	3.8	50	81	2	205	21	27	22	28	1.99
33535913--33536112	106	1.9	106	85	4	278	38	18	13	30	1.89
33539131--33539202	25	2.9	25	89	0	108	25	19	26	29	1.99
33545716--33545752	9	4.1	9	85	0	56	45	10	10	32	1.74
33545801--33545861	30	2.0	31	87	3	88	21	44	0	34	1.53
33545966--33546025	30	2.0	31	86	3	86	21	38	0	40	1.54
33548071--33548112	22	1.9	22	85	0	57	50	4	4	40	1.45
33557433--33557469	18	2.0	19	94	5	67	27	10	0	62	1.28
33569557--33569927	44	8.3	43	74	10	271	32	17	22	28	1.96
33569488--33569796	139	2.2	140	88	2	462	31	17	22	28	1.96
33569594--33569774	95	1.9	95	82	6	224	33	17	23	25	1.96
33572362--33572407	24	1.9	24	90	0	74	45	28	6	19	1.75
33574073--33574118	24	1.9	24	91	8	76	36	0	2	60	1.09
33574306--33574347	16	2.6	16	92	0	66	42	7	2	47	1.43
33574321--33574376	23	2.5	23	85	2	78	42	1	3	51	1.29
33574464--33574502	19	2.1	19	95	0	69	38	23	5	33	1.77
33586744--33586827	21	4.0	21	80	0	78	27	25	30	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33589971--33590032	20	3.1	20	76	0	70	37	20	24	17	1.94
33592349--33592428	30	2.7	30	82	1	99	46	6	25	22	1.75
33596593--33596623	9	3.4	9	95	0	53	35	0	3	61	1.12
33599567--33599603	16	2.2	18	85	9	51	29	16	0	54	1.43
33603293--33603344	24	2.2	24	89	0	77	53	7	1	36	1.41
33605269--33605320	24	2.2	24	92	0	86	55	7	1	34	1.39
33607807--33607918	35	3.0	37	71	18	106	34	22	16	25	1.95
33607777--33607917	75	1.9	75	86	4	205	34	24	16	24	1.95
33611399--33611433	16	2.1	17	89	5	54	40	0	48	11	1.39
33620075--33620099	13	1.9	13	100	0	50	40	20	8	32	1.81
33636538--33636592	15	3.8	15	85	2	69	1	21	1	74	1.01
33641030--33641071	11	3.7	11	96	3	75	78	7	0	14	0.95
33641030--33641074	12	3.8	12	94	5	83	75	6	0	17	1.01
33641019--33641072	23	2.3	23	90	0	81	79	5	3	11	1.02
33641030--33641074	23	2.0	23	100	0	90	75	6	0	17	1.01
33641125--33641164	17	2.4	17	83	8	55	85	0	10	5	0.75
33642078--33642116	15	2.4	15	87	12	51	66	2	20	10	1.33
33652065--33652105	22	1.9	21	85	5	55	60	4	21	12	1.50
33655685--33655734	17	2.7	20	78	18	70	10	0	44	46	1.37
33660313--33660362	17	2.7	20	78	18	70	10	0	44	46	1.37
33662077--33662119	17	2.5	17	80	3	50	60	4	2	32	1.30
33664151--33664353	82	2.6	78	88	3	291	49	17	6	25	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33664422--33664852	160	2.7	157	82	7	503	33	13	15	37	1.87
33665719--33665836	54	2.2	54	85	0	155	24	49	4	22	1.68
33668042--33668080	9	4.1	9	86	3	51	20	2	7	69	1.26
33668109--33668147	17	2.2	18	86	9	53	28	2	2	66	1.18
33668302--33668504	101	2.0	99	98	1	388	38	17	13	29	1.89
33670394--33670470	37	2.1	37	100	0	154	41	18	7	32	1.79
33678472--33678505	16	2.1	16	89	10	52	41	0	0	58	0.98
33682063--33682291	114	2.0	113	93	0	386	33	20	15	31	1.93
33684206--33684420	106	2.0	106	89	1	324	33	16	17	33	1.92
33685127--33685660	23	22.7	23	75	4	449	42	17	14	26	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226