Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  160  of  226  ( 27070 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49604683--49604890
107
2.0
107
87
6
307
45
22
12
20
1.84
49604683--49604934
80
3.1
80
83
8
298
44
21
13
20
1.86
49610753--49610799
24
2.0
24
91
0
76
27
6
21
44
1.76
49610753--49610813
24
2.5
24
83
0
59
26
8
21
44
1.80
49610929--49610994
26
2.5
26
80
0
78
21
19
24
34
1.96
49610988--49611077
32
2.8
33
80
11
105
22
17
20
40
1.92
49611017--49611078
32
1.9
32
93
6
108
24
19
17
38
1.93
49624365--49624457
6
15.3
6
75
6
62
22
5
2
69
1.19
49624365--49624441
19
4.2
18
78
9
75
22
6
1
70
1.18
49624347--49624454
36
3.0
37
78
10
109
24
6
2
66
1.28
49624365--49624454
13
7.4
12
75
18
62
23
5
2
68
1.21
49624375--49624453
19
4.3
19
74
6
63
24
6
2
67
1.27
49624365--49624465
12
8.6
11
76
20
73
22
4
1
70
1.17
49626416--49626463
24
2.0
24
84
12
62
18
6
6
68
1.32
49641395--49641479
42
2.0
42
93
0
143
22
16
24
36
1.94
49646441--49646484
15
2.8
16
80
16
56
43
0
2
54
1.12
49657904--49657932
13
2.2
13
100
0
58
34
0
24
41
1.55
49659992--49660023
14
2.1
16
88
11
50
31
0
3
65
1.08
49661364--49661432
10
7.3
10
70
23
51
56
0
4
39
1.19
49661364--49661485
19
6.6
18
68
16
54
55
0
3
40
1.22
49661354--49661485
47
2.8
47
74
17
112
55
2
3
39
1.28
49661530--49661598
30
2.3
30
85
7
86
65
1
5
27
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49661904--49661978
20
3.7
19
75
15
62
56
0
5
38
1.22
49661918--49661978
31
1.9
32
83
3
79
59
0
4
36
1.19
49661918--49661982
11
6.2
11
70
8
55
60
0
4
35
1.18
49661930--49662003
20
3.6
21
78
7
71
59
1
4
35
1.25
49664224--49664253
14
2.1
14
93
0
51
63
0
0
36
0.95
49666932--49667006
19
3.8
19
91
6
114
36
18
10
34
1.86
49667353--49667732
44
8.9
42
73
15
227
30
25
15
28
1.96
49667496--49667751
89
2.9
88
84
3
343
30
25
15
29
1.95
49667476--49667750
133
2.1
133
94
0
487
30
25
14
29
1.95
49667496--49667751
44
5.8
44
86
2
361
30
25
15
29
1.95
49667759--49668067
88
3.5
88
92
1
503
23
26
23
25
2.00
49667802--49668033
44
5.3
44
70
4
198
25
28
23
22
1.99
49668072--49668715
88
7.3
88
89
0
939
25
26
22
25
2.00
49668308--49668712
44
9.2
44
68
10
200
25
26
23
23
2.00
49671427--49671488
31
2.0
31
93
0
106
19
19
22
38
1.93
49674422--49674496
19
3.8
19
91
6
114
36
18
10
34
1.86
49675253--49675323
37
1.9
36
83
8
90
38
5
5
50
1.49
49675290--49675351
24
2.6
23
78
16
72
40
11
1
46
1.49
49675378--49675486
50
2.2
49
91
3
175
44
12
0
42
1.42
49677192--49677226
16
2.2
16
89
0
52
22
14
20
42
1.88
49679675--49679734
7
8.4
7
78
15
61
81
1
15
1
0.85
49679683--49679728
6
7.8
6
81
13
60
82
0
17
0
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49679672--49679728
12
5.1
11
81
8
62
84
1
14
0
0.71
49680238--49680274
15
2.6
15
87
8
51
67
0
18
13
1.23
49681508--49681734
44
5.2
44
63
8
138
25
17
26
30
1.97
49681816--49682047
44
5.3
44
63
10
132
25
22
23
28
1.99
49681505--49682117
88
7.0
88
91
0
902
27
19
24
28
1.99
49682471--49682763
126
2.3
125
81
10
310
30
19
21
29
1.97
49683149--49683188
21
1.9
21
84
0
53
15
50
20
15
1.79
49683305--49683344
17
2.2
18
86
8
55
80
0
12
7
0.91
49684020--49684077
3
18.3
3
80
16
64
29
0
1
68
0.99
49684020--49684078
7
8.7
7
87
12
79
28
0
1
69
0.98
49689548--49689577
3
10.0
3
100
0
60
33
0
0
66
0.92
49690059--49690118
9
6.2
9
81
14
75
25
10
30
35
1.88
49690060--49690118
31
1.9
31
96
0
109
25
10
30
33
1.89
49690181--49690239
28
2.1
28
80
0
64
40
6
16
35
1.76
49693314--49693399
28
3.0
28
83
11
102
30
19
5
44
1.74
49693489--49693555
22
3.0
20
73
16
53
41
26
2
28
1.70
49694279--49694309
9
3.4
9
90
0
53
0
9
3
87
0.66
49694280--49694316
19
1.9
19
89
10
58
0
13
2
83
0.74
49699538--49699585
18
2.6
18
86
3
60
33
4
8
54
1.50
49699552--49699590
18
2.2
18
95
0
69
28
2
10
58
1.44
49701055--49701102
17
2.7
18
83
9
62
64
2
6
27
1.28
49703568--49703746
50
3.6
50
77
6
168
28
21
26
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49706372--49706401
16
1.9
16
93
6
53
46
0
13
40
1.43
49706569--49706630
28
2.2
28
85
5
81
24
12
12
50
1.76
49706847--49707124
123
2.2
125
96
2
508
29
15
21
34
1.93
49707363--49707399
16
2.3
16
100
0
74
45
13
18
21
1.84
49710277--49710447
29
5.9
29
95
3
308
28
0
26
45
1.54
49710277--49710447
59
2.9
59
97
1
319
28
0
26
45
1.54
49712761--49712804
22
2.2
20
88
12
63
63
0
0
36
0.95
49712754--49712818
32
2.1
30
91
5
103
61
0
0
38
0.96
49712853--49712924
22
3.3
22
96
3
128
36
0
34
29
1.58
49716713--49716780
25
2.8
24
76
10
57
45
1
5
47
1.36
49719413--49719535
64
1.9
64
80
3
140
24
19
20
35
1.95
49721258--49721301
23
1.9
23
85
0
61
43
6
11
38
1.67
49725296--49725352
28
2.0
28
93
0
96
24
12
17
45
1.83
49726124--49726149
13
2.0
13
100
0
52
30
23
0
46
1.53
49727872--49727940
35
1.9
36
91
2
113
26
4
18
50
1.65
49729257--49729323
34
1.9
35
90
3
109
46
13
8
31
1.74
49730642--49730682
3
13.7
3
94
0
73
31
2
0
65
1.05
49738959--49739425
47
9.9
47
96
1
830
31
8
30
29
1.87
49739544--49739621
36
2.1
37
90
2
122
24
19
30
25
1.98
49741525--49741598
29
2.6
29
89
4
105
25
16
32
25
1.96
49741910--49742130
40
5.6
40
89
5
297
24
21
27
25
1.99
49743087--49743136
24
2.0
25
92
3
84
30
8
22
40
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49745862--49746241
48
7.9
47
88
4
546
33
8
28
29
1.87
49745862--49746241
97
4.0
96
89
5
547
33
8
28
29
1.87
49746361--49746439
37
2.1
37
88
4
115
25
18
30
25
1.98
49747869--49747907
13
2.9
14
96
3
71
23
15
0
61
1.33
49747946--49747989
12
3.6
12
78
6
52
13
9
9
68
1.40
49748174--49748207
16
2.1
16
88
0
50
73
5
8
11
1.24
49754068--49754134
34
1.9
35
87
3
100
31
8
14
44
1.76
49756650--49756698
25
2.1
24
88
11
75
36
12
24
26
1.91
49757341--49757402
30
2.1
30
90
0
97
25
4
12
56
1.56
49768007--49768055
20
2.5
20
86
6
64
61
2
4
32
1.26
49769275--49769443
63
2.7
62
80
5
196
25
26
20
28
1.99
49770432--49770489
10
6.1
9
80
11
71
60
0
0
39
0.97
49770430--49770484
19
2.9
18
81
7
65
60
0
0
40
0.97
49770434--49770491
29
2.0
29
87
9
84
60
0
0
39
0.97
49772212--49772250
20
1.9
20
84
5
51
48
2
5
43
1.38
49776196--49776221
13
2.0
13
100
0
52
38
15
7
38
1.76
49784857--49784882
13
2.0
13
100
0
52
38
15
7
38
1.76
49786624--49786661
15
2.4
16
82
8
51
23
31
0
44
1.54
49788060--49788090
16
1.9
16
93
0
53
67
3
0
29
1.06
49789393--49789427
18
1.9
18
88
0
52
62
0
0
37
0.95
49789377--49789427
10
5.3
10
77
13
54
60
0
1
37
1.08
49789694--49789755
9
6.6
9
73
15
54
27
3
1
67
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49789695--49789783
10
9.2
10
74
12
71
29
3
1
66
1.15
49789695--49789776
19
4.2
19
75
14
69
28
3
1
67
1.15
49789851--49790058
93
2.3
89
78
11
237
33
10
18
37
1.85
49790147--49790207
10
6.2
10
74
11
54
22
11
3
62
1.43
49790152--49790210
29
2.0
29
100
0
118
23
10
3
62
1.42
49798583--49798695
44
2.7
41
72
14
95
30
23
16
30
1.96
49798672--49798930
44
5.7
44
73
13
218
28
21
18
31
1.97
49798616--49798898
142
2.0
142
94
0
494
27
20
18
33
1.96
49817207--49817236
7
4.4
7
91
8
53
26
0
0
73
0.84
49817261--49817319
32
1.9
31
86
13
86
42
11
1
44
1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226