genome.fa.s24.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  117  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36424172--36424453	30	9.3	30	75	8	196	40	14	24	21	1.90
36424199--36424466	91	2.9	90	82	7	294	39	14	23	21	1.91
36424172--36424453	121	2.3	121	90	1	449	40	14	24	21	1.90
36429080--36429132	26	2.0	27	82	10	65	58	0	11	30	1.33
36429424--36429484	30	2.0	31	81	9	72	47	0	18	34	1.49
36429835--36430090	30	8.4	30	71	11	141	38	13	24	23	1.91
36429923--36430093	91	1.9	91	80	2	200	38	15	24	22	1.92
36429871--36430092	121	1.8	121	85	3	313	39	13	24	22	1.91
36452489--36453185	348	2.0	348	97	0	1331	35	6	17	40	1.75
36453519--36453543	11	2.3	11	100	0	50	84	8	0	8	0.79
36457063--36457115	22	2.4	22	83	0	70	9	3	50	35	1.53
36466836--36467044	27	7.7	27	71	6	145	39	20	18	22	1.92
36466876--36467048	81	2.1	81	80	9	194	39	19	19	21	1.93
36466850--36466985	54	2.5	54	82	0	173	38	19	19	22	1.94
36467040--36467137	48	2.0	48	84	4	124	23	11	21	43	1.84
36467065--36467175	24	4.6	24	78	8	100	21	6	23	48	1.73
36467067--36467163	48	2.0	47	84	11	126	21	6	22	49	1.71
36467075--36467175	48	2.1	47	82	10	116	19	5	23	50	1.70
36468366--36468587	110	2.0	111	92	0	374	33	22	18	25	1.97
36471933--36472124	50	3.8	50	83	0	222	22	28	21	28	1.99
36472515--36472572	30	1.9	30	85	0	80	32	20	10	36	1.87
36487536--36487613	26	3.0	26	75	1	86	35	20	20	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36513888--36514179	50	5.7	50	83	2	316	27	21	26	23	1.99
36520219--36520454	50	4.7	50	78	2	217	28	23	25	22	1.99
36527056--36527132	22	3.2	22	65	19	55	37	25	12	23	1.91
36534534--36534589	25	2.4	23	85	11	78	73	0	21	5	1.03
36534913--36534956	18	2.4	18	88	7	63	72	0	27	0	0.85
36534890--36534949	23	2.6	23	78	7	59	68	1	30	0	0.99
36536911--36536942	12	2.7	12	90	0	55	28	6	15	50	1.68
36543930--36544464	75	7.0	75	79	7	524	31	17	19	32	1.95
36544088--36544469	151	2.5	152	85	2	509	30	18	19	32	1.95
36544856--36544911	28	1.9	28	85	7	76	32	16	5	46	1.69
36545627--36545672	20	2.1	23	84	11	62	60	0	39	0	0.97
36545777--36545833	9	6.2	9	79	4	60	75	0	22	1	0.90
36545796--36545833	17	2.2	18	90	4	60	76	0	23	0	0.79
36545771--36545833	26	2.4	28	76	10	69	74	0	23	1	0.90
36548276--36548318	21	2.0	22	86	4	61	18	6	4	69	1.29
36549980--36550127	33	4.4	33	72	22	112	30	28	20	20	1.98
36550285--36550336	27	1.9	27	96	0	95	28	30	21	19	1.97
36550003--36550334	103	3.2	103	88	0	495	32	27	20	19	1.97
36550660--36550717	30	1.9	30	82	6	73	34	22	5	37	1.76
36551434--36551466	15	2.2	15	100	0	66	51	12	12	24	1.73
36556097--36556776	47	14.3	47	91	2	1006	32	8	29	28	1.88
36556097--36556776	96	7.2	94	90	2	1006	32	8	29	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36558959--36559186	40	5.7	40	88	2	325	24	22	28	24	2.00
36559396--36559504	57	1.9	57	88	1	164	23	19	28	28	1.98
36562971--36563565	47	12.4	49	93	2	930	33	8	29	29	1.87
36562971--36563565	96	6.2	96	92	2	986	33	8	29	29	1.87
36568951--36569255	103	3.0	103	86	2	407	32	26	20	20	1.97
36568951--36569255	102	3.0	102	85	3	407	32	26	20	20	1.97
36574098--36574136	20	2.0	20	94	0	69	15	23	2	58	1.49
36574389--36574579	50	3.7	50	76	8	161	24	28	20	26	1.99
36577756--36577976	41	5.4	41	95	1	390	19	28	21	30	1.98
36577764--36578004	123	2.0	123	89	1	367	21	27	20	29	1.98
36579675--36579733	28	2.0	31	83	9	79	50	5	0	44	1.24
36580238--36580284	24	2.0	24	100	0	94	25	25	23	25	2.00
36583300--36583350	13	3.9	13	94	0	93	23	9	27	39	1.86
36583938--36583981	22	2.0	21	91	4	70	40	4	13	40	1.65
36587822--36587951	58	2.2	58	95	0	242	34	41	13	10	1.79
36588189--36588355	27	6.2	26	80	8	140	19	17	20	42	1.89
36588183--36588355	80	2.1	81	88	5	253	19	17	19	42	1.89
36588183--36588355	54	3.2	53	84	5	197	19	17	19	42	1.89
36593137--36593253	49	2.4	50	82	4	139	23	25	20	30	1.98
36593124--36593303	50	3.6	50	80	2	166	21	27	22	28	1.99
36599008--36599133	43	3.0	42	80	4	130	29	14	26	29	1.95
36602607--36602667	25	2.4	26	83	5	72	68	1	6	22	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36606849--36606885	19	1.9	19	88	0	56	56	0	8	35	1.29
36618155--36618299	27	5.4	26	84	9	175	40	20	19	20	1.91
36618162--36618413	54	4.5	54	77	11	227	40	18	19	21	1.92
36618298--36618412	27	4.3	27	82	0	140	40	15	20	23	1.90
36618233--36618358	65	1.9	65	90	0	198	42	15	19	22	1.88
36618215--36618384	92	1.8	92	87	2	252	41	16	19	22	1.90
36618188--36618414	119	1.9	119	90	0	364	40	18	19	22	1.92
36623439--36623492	18	3.1	18	71	17	51	33	0	12	53	1.39
36626503--36626605	53	1.9	53	92	3	172	30	27	22	20	1.98
36638227--36638363	32	4.3	32	90	0	204	37	21	21	18	1.94
36638535--36638616	24	3.4	24	89	0	128	47	24	7	20	1.75
36638641--36638915	27	10.2	26	76	6	140	23	17	18	40	1.91
36638613--36638779	53	3.1	53	78	5	158	22	18	19	39	1.92
36638616--36638864	54	4.6	54	75	4	180	23	18	18	39	1.92
36638641--36638997	54	6.6	54	73	10	187	22	17	19	40	1.91
36638616--36638865	81	3.1	80	80	5	279	23	18	18	39	1.92
36638723--36638959	81	2.9	80	80	6	205	23	16	17	41	1.89
36638800--36639013	27	7.9	27	84	1	214	22	16	19	41	1.90
36644994--36645117	32	3.9	32	79	4	124	40	18	18	22	1.91
36647962--36648009	25	1.9	25	95	0	87	37	16	22	22	1.94
36648912--36649238	50	6.6	50	84	1	356	22	29	20	26	1.99
36649204--36649282	42	1.9	41	81	2	95	26	25	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36656504--36656570	34	2.0	34	100	0	134	23	2	31	41	1.70
36663056--36663465	27	15.3	27	81	2	421	43	20	16	19	1.88
36663830--36663918	28	3.2	28	90	1	135	22	21	22	33	1.97
36668056--36668090	18	1.9	18	88	11	54	22	20	0	57	1.41
36669005--36669052	20	2.4	20	86	6	62	12	4	4	79	1.02
36681380--36681431	27	2.0	27	84	3	70	44	21	15	19	1.87
36681538--36681650	27	4.2	27	87	0	154	18	21	21	38	1.93
36683914--36683975	28	2.2	28	88	2	90	30	22	24	22	1.99
36684317--36684375	27	2.2	27	90	0	91	18	18	20	42	1.90
36686626--36686699	28	2.4	32	75	25	86	28	24	22	24	2.00
36686631--36686696	28	2.4	28	87	12	100	25	24	24	25	2.00
36686962--36687003	16	2.7	16	96	3	77	45	14	11	28	1.80
36687049--36687175	27	4.7	27	81	4	141	15	19	21	43	1.88
36687049--36687188	54	2.6	54	82	6	158	17	18	20	44	1.87
36689540--36689605	28	2.4	28	82	7	73	30	21	22	25	1.99
36689903--36690055	27	5.7	26	76	10	112	16	17	21	43	1.88
36689903--36690058	54	2.9	53	78	7	152	17	17	21	44	1.87
36689903--36690068	81	2.0	81	83	2	208	17	16	21	45	1.86
36689928--36690058	27	4.9	27	84	0	145	18	16	20	44	1.87
36702754--36703089	51	6.6	51	82	5	376	29	15	25	29	1.96
36702750--36703093	102	3.4	102	87	4	473	29	15	25	29	1.96
36704156--36704192	19	1.9	19	89	10	58	43	5	5	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36704622--36704699	39	2.0	39	97	0	147	42	15	6	35	1.73
36705627--36705667	15	2.7	15	96	0	73	7	4	46	41	1.53
36706124--36706428	142	2.2	142	90	0	477	27	20	18	33	1.96
36729752--36729786	16	2.2	16	89	0	52	0	34	0	65	0.93
36730019--36730061	15	2.8	16	79	10	54	60	0	2	37	1.10
36737227--36737257	15	2.0	16	93	6	55	77	6	0	16	0.97
36737817--36737853	18	1.9	19	89	10	58	16	0	0	83	0.64
36737816--36737855	14	2.9	14	88	7	55	15	0	0	85	0.61
36746123--36746207	41	2.1	41	93	0	143	27	23	23	25	2.00
36746676--36746721	19	2.4	19	85	3	56	41	10	2	45	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226