genome.fa.s24.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  84  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26494171--26494390	26	8.5	25	77	8	181	20	15	26	38	1.91
26494170--26494390	52	4.3	51	81	4	237	19	14	26	38	1.91
26494171--26494372	78	2.6	78	79	6	212	19	15	25	39	1.91
26495411--26495516	54	2.0	54	81	3	124	30	26	28	15	1.96
26512771--26513030	126	2.1	126	85	4	355	27	18	22	31	1.97
26515766--26515796	15	2.1	15	100	0	62	48	12	6	32	1.67
26519129--26519261	40	3.4	39	73	7	108	41	22	17	18	1.90
26519232--26519343	42	2.8	39	83	5	134	25	25	23	25	2.00
26520577--26520824	132	1.9	132	92	5	421	50	6	6	36	1.55
26525566--26525751	43	4.3	42	84	4	194	20	18	30	30	1.97
26525586--26525773	44	4.3	44	83	7	188	23	19	28	28	1.98
26525561--26525753	87	2.2	86	82	5	230	20	17	30	31	1.96
26525845--26525887	22	2.0	22	90	0	68	41	25	20	11	1.86
26538180--26538392	40	5.3	40	81	3	223	20	29	17	32	1.95
26538180--26538392	80	2.7	79	79	5	250	20	29	17	32	1.95
26540856--26540973	56	2.1	56	82	3	139	26	26	25	22	2.00
26541960--26542053	25	3.8	25	82	1	109	30	22	27	19	1.98
26542006--26542123	25	4.8	24	78	8	85	35	16	24	23	1.94
26544008--26544061	5	11.2	5	94	5	94	59	0	0	40	0.98
26544138--26544198	31	2.0	31	96	0	113	50	24	3	21	1.63
26554079--26554124	20	2.2	20	88	11	67	63	4	0	32	1.14
26554101--26554140	19	2.1	19	86	9	55	60	10	0	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26556241--26556305	4	14.8	4	78	15	58	23	9	0	67	1.19
26556252--26556304	5	11.4	5	84	9	60	20	11	0	67	1.21
26556244--26556303	18	3.6	18	84	15	92	21	10	0	68	1.19
26556837--26556885	10	4.7	10	80	9	53	34	0	0	65	0.93
26559741--26560202	237	1.9	237	89	0	719	22	19	25	32	1.97
26560744--26560786	23	2.0	22	90	9	70	2	18	0	79	0.85
26571551--26571575	13	1.9	13	100	0	50	16	0	8	76	1.02
26587619--26587686	7	9.7	7	100	0	136	27	0	14	57	1.38
26588966--26589005	7	5.9	7	85	14	57	47	0	0	52	1.00
26588841--26589280	108	4.2	96	72	21	335	46	19	1	32	1.58
26589037--26589089	22	2.5	22	87	3	81	45	30	0	24	1.54
26589250--26589364	22	5.4	21	84	6	151	44	30	0	25	1.54
26589450--26589519	21	3.4	21	92	2	106	44	30	0	25	1.55
26589300--26589676	155	2.4	155	88	8	575	45	22	0	31	1.58
26589605--26589693	21	4.2	21	89	2	142	44	31	0	23	1.54
26589605--26589693	43	2.1	42	95	2	160	44	31	0	23	1.54
26589689--26589731	20	2.1	21	91	4	70	44	39	0	16	1.48
26592800--26593235	125	3.5	125	88	1	597	29	20	18	31	1.96
26593283--26593324	21	2.0	22	85	4	59	50	30	0	19	1.48
26595973--26596031	24	2.4	25	82	5	66	28	10	3	57	1.48
26599522--26599653	25	5.5	24	87	6	180	40	21	21	15	1.90
26599521--26599653	49	2.8	49	87	6	175	41	21	21	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26600476--26600507	12	2.6	13	85	14	50	40	25	0	34	1.56
26600680--26600705	11	2.4	11	100	0	52	0	42	7	50	1.31
26600765--26600799	5	6.8	5	87	6	52	60	0	0	40	0.97
26600756--26600799	21	2.0	22	95	4	81	59	0	0	40	0.98
26606784--26606915	25	5.5	24	85	6	171	40	21	21	16	1.91
26606783--26606915	49	2.8	49	85	6	166	41	21	21	16	1.90
26607737--26607768	12	2.6	13	85	14	50	40	25	0	34	1.56
26607941--26607966	11	2.4	11	100	0	52	0	42	7	50	1.31
26608026--26608060	5	6.8	5	87	6	52	60	0	0	40	0.97
26608017--26608060	21	2.0	22	95	4	81	59	0	0	40	0.98
26615132--26617917	948	2.9	948	92	1	4585	33	16	23	26	1.96
26619823--26620222	132	3.0	132	87	0	566	29	18	25	26	1.98
26620226--26620386	50	3.2	50	81	0	205	34	22	17	26	1.96
26620808--26620842	11	3.1	11	91	4	52	2	54	25	17	1.57
26621815--26621880	25	2.6	25	80	4	71	30	9	3	57	1.45
26622101--26622148	23	2.1	23	88	0	69	16	6	10	66	1.41
26628502--26628550	24	2.0	24	100	0	98	32	4	12	51	1.58
26629451--26629501	26	1.9	27	84	11	70	37	23	3	35	1.74
26636078--26636116	19	2.0	20	85	14	55	28	2	7	61	1.37
26636116--26636154	20	2.0	19	90	5	60	43	2	0	53	1.14
26637043--26637069	4	6.8	4	100	0	54	77	0	22	0	0.76
26652894--26652980	24	3.8	23	74	9	79	19	2	51	26	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26652879--26652977	45	2.3	43	84	8	137	18	2	54	25	1.54
26654562--26654612	22	2.4	21	84	9	68	27	23	3	45	1.70
26654733--26654865	40	3.4	38	74	9	108	30	24	18	26	1.97
26655761--26655795	4	8.2	4	87	12	52	0	25	0	74	0.82
26655761--26655798	9	4.3	9	90	3	60	0	26	0	73	0.83
26655834--26655879	14	3.4	14	76	8	51	32	2	0	65	1.05
26655837--26655890	26	2.1	25	86	3	72	35	3	0	61	1.14
26655847--26655904	26	2.2	26	81	6	64	39	5	1	53	1.33
26657570--26658028	159	2.9	158	83	4	568	35	17	14	32	1.90
26658105--26658307	82	2.5	82	91	1	318	27	6	16	49	1.71
26660230--26660269	17	2.4	17	91	4	64	30	0	2	67	1.04
26660230--26660277	16	2.8	17	87	9	53	29	2	2	66	1.14
26664384--26664440	30	1.9	30	82	13	73	47	3	0	49	1.18
26664611--26664663	13	4.1	13	82	0	70	35	22	7	33	1.83
26672833--26672968	42	3.2	42	85	2	175	11	22	17	48	1.79
26676007--26676037	9	3.4	9	95	0	53	41	22	9	25	1.84
26676045--26676107	17	3.5	17	69	12	54	49	12	4	33	1.62
26676239--26676331	38	2.4	39	94	1	161	20	3	24	51	1.62
26678369--26678535	72	2.3	72	88	3	248	56	13	5	24	1.57
26678966--26679031	18	3.7	18	93	0	105	37	10	15	36	1.82
26681065--26681108	14	3.1	14	93	0	70	54	22	22	0	1.45
26681324--26681357	17	1.9	17	94	5	59	17	0	41	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26681412--26681443	13	2.5	13	95	5	57	12	0	43	43	1.42
26683838--26683874	5	7.6	5	90	6	58	83	0	16	0	0.64
26699543--26699695	44	3.5	43	79	11	148	29	23	16	30	1.97
26699545--26699986	45	9.7	45	72	13	242	28	21	18	31	1.97
26700146--26700733	44	13.7	42	71	10	334	26	20	21	31	1.98
26700140--26700736	129	4.6	129	89	1	858	26	20	21	31	1.98
26700140--26700736	257	2.3	258	90	0	910	26	20	21	31	1.98
26701144--26701200	22	2.5	23	82	8	71	28	26	10	35	1.89
26701895--26701930	18	2.0	18	100	0	72	22	5	27	44	1.75
26702152--26702210	13	4.5	12	84	16	73	1	13	0	84	0.69
26702154--26702213	11	5.7	10	84	5	66	1	13	0	85	0.69
26702150--26702210	21	2.9	21	85	4	70	1	14	0	83	0.72
26702152--26702211	27	2.2	26	88	5	84	1	13	0	85	0.69
26702159--26702213	21	2.6	21	88	0	74	1	12	0	85	0.68
26705930--26706124	107	1.8	106	88	3	302	33	18	16	31	1.94
26706269--26706404	73	1.9	73	95	0	245	33	17	19	29	1.95
26706757--26706849	47	2.0	47	85	8	127	59	0	6	34	1.23
26707928--26707969	20	2.1	20	100	0	84	9	14	14	61	1.55
26710583--26710620	3	12.7	3	100	0	76	31	0	0	68	0.90
26711012--26711122	45	2.4	47	79	10	138	43	8	3	45	1.51
26711037--26711124	45	2.0	45	90	0	140	40	5	4	48	1.47
26722956--26722984	3	9.7	3	100	0	58	68	0	31	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26725661--26725716	26	2.2	26	80	6	60	46	10	1	41	1.49
26731121--26731167	22	2.2	21	84	3	58	38	10	4	46	1.58
26732808--26732849	22	1.9	22	90	9	68	14	4	2	78	1.01
26734263--26734304	15	2.5	17	81	18	61	16	21	28	33	1.95
26734410--26734484	6	12.3	6	71	13	55	13	6	4	76	1.13
26743717--26743864	37	4.0	37	94	0	251	27	20	13	38	1.90
26751360--26751507	37	4.0	37	94	0	251	27	20	13	38	1.90
26757618--26757737	63	1.9	63	84	3	161	23	22	27	26	1.99
26761419--26761647	51	4.5	51	97	0	413	33	15	22	28	1.94
26766115--26766191	29	2.6	29	83	4	91	48	14	11	25	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226