genome.fa.s24.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  26  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9116448--9116476	14	2.0	15	93	6	51	44	0	0	55	0.99
9117583--9117629	21	2.2	22	84	3	60	40	6	2	51	1.39
9117673--9117702	15	1.9	16	93	6	53	36	0	0	63	0.95
9118875--9118900	7	3.7	7	100	0	52	15	11	0	73	1.11
9127205--9127318	45	2.5	45	80	2	140	22	23	13	40	1.89
9129887--9130071	100	1.9	100	95	0	334	31	6	8	53	1.57
9130955--9131160	43	4.8	43	86	2	297	30	32	16	21	1.95
9131361--9131420	18	3.4	18	64	13	52	40	10	6	43	1.64
9135841--9135894	7	7.7	7	81	8	56	37	44	0	18	1.50
9135842--9135907	21	3.1	21	80	8	80	37	46	0	15	1.46
9135841--9135902	7	8.9	7	80	7	54	35	48	0	16	1.46
9136052--9136084	14	2.3	15	94	5	59	36	33	0	30	1.58
9136428--9136471	20	2.3	19	80	7	52	63	4	6	25	1.38
9136476--9136751	41	6.7	41	85	2	338	28	24	21	26	1.99
9136476--9136750	123	2.2	123	87	0	388	28	24	20	26	1.99
9136802--9136929	41	3.2	40	80	5	150	25	17	18	38	1.93
9141466--9141503	9	4.2	9	86	0	58	26	7	23	42	1.81
9142776--9143289	110	4.5	110	84	8	572	39	14	17	28	1.89
9142776--9143289	226	2.3	224	84	6	642	39	14	17	28	1.89
9143304--9143761	112	4.0	113	87	7	640	28	16	14	40	1.88
9144137--9144211	27	2.8	27	78	13	75	30	1	1	66	1.08
9144156--9144195	19	2.2	19	90	4	64	32	2	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9144163--9144259	37	2.6	37	79	9	108	28	3	0	68	1.05
9144156--9144271	46	2.5	47	83	12	141	29	3	0	67	1.07
9144191--9144245	18	2.9	19	78	5	58	27	3	0	69	1.05
9144163--9144223	27	2.2	28	85	2	88	29	1	0	68	0.99
9144193--9144245	20	2.9	17	79	20	54	28	3	0	67	1.07
9149021--9149058	13	3.0	13	82	17	53	39	0	15	44	1.47
9149784--9149828	9	4.7	10	78	15	51	62	0	0	37	0.96
9153701--9153760	3	19.7	3	74	16	52	33	1	3	61	1.22
9153715--9153760	14	3.4	14	83	16	53	32	0	2	65	1.05
9154834--9154880	18	2.6	18	86	6	60	40	0	2	57	1.11
9155040--9155132	44	2.1	44	89	4	141	37	30	3	29	1.73
9155048--9155146	46	2.2	44	83	7	119	40	31	5	23	1.76
9155814--9155878	30	2.1	31	82	2	78	49	0	20	30	1.49
9167672--9167715	20	2.1	22	83	8	56	36	9	6	47	1.62
9169343--9169398	3	18.7	3	100	0	112	67	0	0	32	0.91
9189195--9189318	66	1.9	66	89	0	194	27	20	20	30	1.98
9192207--9192244	15	2.5	15	91	4	58	42	0	2	55	1.14
9197802--9197875	23	3.2	23	90	0	112	27	10	21	40	1.86
9200181--9200219	19	2.0	20	90	10	62	46	7	0	46	1.31
9203767--9203794	7	4.0	7	100	0	56	71	0	0	28	0.86
9204123--9204171	17	3.0	16	82	8	55	28	4	0	67	1.09
9204143--9204183	18	2.3	19	87	8	59	24	7	0	68	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9204277--9204514	91	2.7	90	87	6	351	31	7	19	41	1.80
9204691--9204779	30	3.0	29	81	8	90	32	7	12	47	1.70
9204714--9204781	30	2.3	30	87	2	93	30	8	11	48	1.70
9206586--9206697	24	4.6	24	73	11	77	16	25	24	33	1.96
9206725--9206772	25	1.9	25	91	0	78	20	31	14	33	1.93
9206725--9206784	25	2.4	25	83	5	77	21	28	16	33	1.95
9212476--9212505	2	15.0	2	100	0	60	50	0	0	50	1.00
9213167--9213206	21	1.9	21	100	0	80	30	10	10	50	1.69
9213581--9213622	16	2.6	16	92	0	66	42	7	2	47	1.43
9213637--9213665	6	4.8	6	100	0	58	34	0	0	65	0.93
9214249--9214445	108	1.8	106	84	5	272	34	18	17	29	1.94
9215109--9215145	17	2.1	18	90	5	58	45	5	5	43	1.49
9215161--9215238	23	3.5	23	87	7	124	41	2	10	46	1.51
9215171--9215238	21	3.1	21	87	8	109	42	1	8	47	1.43
9215724--9215817	36	2.6	36	93	1	161	23	27	27	21	1.99
9220715--9220828	57	1.9	58	82	10	142	47	17	10	24	1.79
9229237--9229293	26	2.2	27	81	15	75	36	1	7	54	1.38
9229237--9229296	30	2.1	27	84	9	75	38	1	6	53	1.37
9230923--9230961	19	2.0	20	90	5	62	53	2	0	43	1.14
9230926--9230996	18	4.0	17	71	12	54	54	1	0	43	1.08
9234100--9234139	21	1.9	21	84	0	53	45	45	5	5	1.47
9239950--9239977	4	7.0	4	100	0	56	25	0	50	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9245169--9245209	19	2.2	19	100	0	82	53	19	4	21	1.63
9260879--9260916	3	12.7	3	94	0	67	71	0	28	0	0.87
9261425--9261455	16	1.9	16	100	0	62	61	0	19	19	1.35
9264355--9264443	8	12.0	7	76	23	69	73	0	3	23	0.99
9264353--9264439	20	4.9	19	76	21	84	73	0	3	22	0.98
9264370--9264441	5	14.4	5	72	16	60	75	0	2	22	0.94
9264353--9264434	25	3.3	25	98	1	157	73	0	3	23	0.99
9264352--9264443	12	7.5	12	68	31	54	73	0	3	22	0.97
9270260--9270334	31	2.4	31	88	0	114	48	4	16	32	1.64
9270280--9270345	31	2.1	31	88	0	96	50	4	13	31	1.62
9280100--9280151	15	3.4	16	75	25	58	59	0	0	40	0.97
9280092--9280144	24	2.1	26	86	10	74	56	0	0	43	0.99
9280092--9280156	30	2.3	27	86	7	85	58	0	0	41	0.98
9280288--9280329	3	14.7	3	82	9	52	38	0	2	59	1.10
9280287--9280327	11	4.0	10	85	14	57	39	0	2	58	1.11
9280288--9280324	14	2.6	14	86	0	56	37	0	2	59	1.12
9280374--9280421	22	2.2	22	85	14	64	72	8	18	0	1.08
9281333--9281419	44	2.0	41	82	6	102	19	21	21	36	1.95
9281333--9281419	21	4.1	20	75	10	66	19	21	21	36	1.95
9283131--9283216	25	3.4	25	77	6	84	33	17	27	20	1.95
9283146--9283227	25	3.3	25	86	3	103	35	20	23	20	1.96
9284864--9285690	415	2.0	415	98	0	1591	34	13	20	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9288239--9288272	13	2.6	13	90	0	50	50	2	0	47	1.16
9288440--9288472	10	3.4	10	91	4	50	36	0	0	63	0.95
9291833--9291900	29	2.3	29	94	0	118	41	16	7	35	1.76
9294913--9294950	20	1.9	20	88	0	58	76	0	18	5	0.97
9298322--9298346	13	1.9	13	100	0	50	48	0	0	52	1.00
9298877--9298918	18	2.3	18	83	0	57	52	9	0	38	1.34
9301033--9301080	25	2.0	24	87	4	69	39	22	22	14	1.91
9301060--9301110	24	2.1	24	88	0	75	37	21	23	17	1.94
9301068--9301121	24	2.2	24	83	3	63	40	24	20	14	1.90
9301214--9301260	24	2.0	24	91	0	76	38	14	27	19	1.91
9300952--9301260	150	2.1	148	91	3	503	38	20	22	19	1.93
9304472--9304496	12	2.1	12	100	0	50	48	8	8	36	1.62
9309431--9309489	17	3.4	17	76	17	66	55	5	5	33	1.43
9310869--9310912	18	2.3	19	85	14	56	59	2	6	31	1.36
9311484--9311595	42	2.7	41	83	4	134	33	19	22	25	1.97
9311528--9311652	43	2.9	43	80	5	121	30	22	20	26	1.98
9311959--9312093	66	2.0	66	89	0	207	13	26	18	41	1.87
9314423--9314478	19	3.0	20	82	7	73	66	5	3	25	1.29
9314624--9315180	114	4.9	112	83	4	587	26	24	23	25	2.00
9319415--9319465	20	2.7	19	73	8	50	60	1	0	37	1.08
9319412--9319478	19	3.6	18	80	7	71	59	2	0	37	1.13
9319620--9319645	3	8.7	3	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9319717--9319768	22	2.4	22	73	0	59	38	7	3	50	1.50
9321306--9321371	24	2.7	25	90	9	109	30	3	0	66	1.06
9321306--9321370	26	2.6	25	92	7	107	29	3	0	67	1.05
9321282--9321405	61	1.9	67	90	9	206	33	2	0	64	1.07
9327305--9327408	37	2.8	37	77	5	111	38	18	5	37	1.75
9338114--9338217	49	2.1	49	92	0	172	30	8	10	50	1.67
9339643--9339959	61	5.3	61	73	11	312	43	0	4	51	1.25
9339694--9339728	18	2.0	17	88	5	52	45	0	0	54	0.99
9339694--9339747	15	3.4	16	80	19	53	46	0	0	53	1.00
9339602--9339989	120	3.3	120	96	1	728	44	0	3	51	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226