genome.fa.s24.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  106  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32998211--32998347	35	3.9	35	73	3	114	26	26	21	26	1.99
33001509--33001654	65	2.2	65	85	4	197	19	8	28	43	1.80
33004649--33004697	24	2.0	24	100	0	98	24	24	12	38	1.90
33005438--33005638	100	2.0	100	100	0	402	38	10	13	36	1.81
33006437--33006486	9	5.7	9	73	21	52	30	4	0	66	1.10
33012300--33012346	17	2.9	16	75	12	51	17	0	4	78	0.90
33014599--33014673	21	3.7	20	82	7	80	42	18	21	17	1.89
33014616--33014709	21	4.5	21	79	0	98	45	13	20	20	1.84
33018115--33018167	19	3.1	17	82	17	65	67	0	1	30	1.01
33018745--33018770	3	8.7	3	100	0	52	34	0	0	65	0.93
33022338--33022473	18	8.1	16	66	26	61	57	4	0	37	1.24
33022440--33022519	18	3.8	21	74	18	60	50	3	2	43	1.33
33022374--33022618	127	1.9	127	96	1	456	52	4	1	41	1.31
33029139--33029327	98	1.9	98	89	0	288	39	22	11	26	1.87
33030591--33030630	21	1.9	21	94	0	71	60	0	2	37	1.11
33034386--33034449	32	2.0	32	100	0	128	31	9	28	31	1.88
33039644--33039912	43	6.3	43	83	0	313	25	28	18	26	1.98
33040418--33040479	25	2.4	26	89	2	90	40	1	14	43	1.55
33040418--33040489	17	4.2	17	72	13	58	40	1	13	44	1.53
33040588--33040637	25	2.0	26	92	4	84	32	2	20	46	1.62
33040585--33040641	17	3.4	17	80	9	80	33	1	17	47	1.58
33040608--33040767	46	3.3	46	69	17	133	35	1	16	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33040585--33040641	9	6.8	8	84	7	69	33	1	17	47	1.58
33040593--33040768	55	3.4	55	66	17	149	34	1	17	46	1.58
33040585--33040670	17	4.8	17	74	16	75	34	1	16	47	1.54
33041379--33041425	21	2.2	21	84	0	58	46	0	12	40	1.42
33043121--33043180	31	1.9	31	96	0	111	33	23	15	28	1.94
33044767--33044963	102	1.9	102	87	6	288	27	13	12	46	1.80
33044985--33045184	103	1.9	104	96	1	375	24	12	11	52	1.72
33044860--33045331	239	1.9	242	90	5	745	25	14	12	48	1.78
33045089--33046187	147	7.6	146	93	3	1822	26	15	12	45	1.83
33045089--33046187	293	3.8	293	92	3	1862	26	15	12	45	1.83
33045093--33046187	432	2.5	434	95	2	1964	26	15	12	45	1.83
33046349--33046383	15	2.2	16	95	5	63	42	45	0	11	1.40
33046814--33046868	25	2.2	25	75	12	60	21	9	7	61	1.50
33047280--33047312	12	2.6	13	90	4	50	6	0	9	84	0.76
33047947--33047983	3	12.3	3	88	0	56	29	2	2	64	1.21
33052019--33052075	17	3.3	17	80	11	55	71	5	3	19	1.19
33053014--33053076	7	9.0	7	89	6	101	71	0	12	15	1.15
33054209--33056214	88	22.8	88	82	3	2336	28	19	23	28	1.98
33054211--33056214	176	11.4	176	87	1	2592	28	19	23	28	1.98
33054686--33055888	44	27.4	45	60	10	198	27	20	23	28	1.99
33054209--33056214	439	4.6	438	87	2	2594	28	19	23	28	1.98
33056295--33056323	15	1.9	15	100	0	58	31	6	0	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33065888--33065933	15	3.1	15	84	6	58	15	10	8	65	1.47
33066297--33066326	13	2.3	13	94	0	51	50	26	10	13	1.73
33071148--33071239	45	2.0	45	95	0	166	27	15	29	28	1.96
33074693--33075906	614	2.0	612	91	0	1962	29	14	18	36	1.91
33077098--33077131	16	2.2	15	89	5	50	52	2	2	41	1.31
33089915--33089944	15	2.0	15	93	0	51	66	16	13	3	1.37
33095141--33095363	40	5.6	39	80	7	216	25	21	27	25	1.99
33095221--33095398	79	2.2	80	82	3	200	25	21	28	24	1.99
33103075--33103298	40	5.7	40	82	6	233	25	21	27	25	1.99
33103128--33103298	79	2.2	79	84	2	227	25	21	28	25	1.99
33103154--33103331	79	2.2	80	82	3	200	25	21	28	24	1.99
33110310--33110344	18	1.9	18	88	0	52	25	5	11	57	1.56
33118756--33118873	33	3.5	33	83	4	148	13	8	36	41	1.75
33121333--33121357	10	2.5	10	100	0	50	20	0	8	72	1.10
33132849--33132895	21	2.2	22	92	3	78	21	19	38	21	1.94
33137073--33137098	7	3.7	7	100	0	52	53	0	0	46	1.00
33146331--33146909	132	4.4	132	86	2	752	31	21	23	22	1.98
33146525--33146611	44	2.0	44	86	0	120	39	13	21	25	1.90
33146913--33147200	44	6.7	44	73	13	181	31	18	21	28	1.97
33147251--33147610	50	7.2	50	69	6	246	34	23	18	23	1.96
33147221--33147615	100	4.0	100	86	2	515	33	24	18	23	1.97
33148588--33148614	12	2.2	12	100	0	54	14	0	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33148764--33148793	15	2.0	15	100	0	60	20	13	26	40	1.89
33151907--33151972	24	2.7	24	79	11	80	33	24	27	15	1.95
33151917--33152007	24	3.7	25	79	7	87	36	21	27	14	1.92
33151906--33152007	25	4.2	24	77	7	80	35	21	28	14	1.93
33151906--33152007	49	2.1	49	81	3	116	35	21	28	14	1.93
33152269--33152502	115	2.0	115	98	0	450	34	18	14	31	1.92
33153574--33154173	258	2.3	258	91	1	981	37	10	15	36	1.81
33160675--33160771	42	2.3	42	83	1	122	32	25	16	24	1.96
33160707--33160810	44	2.4	42	82	6	111	32	26	17	23	1.96
33177316--33177514	96	2.1	96	98	0	389	35	3	9	52	1.48
33184037--33184087	19	2.7	20	73	11	54	60	1	0	37	1.08
33184023--33184098	24	3.1	23	69	7	62	64	1	0	34	1.02
33189920--33189987	27	2.5	28	80	7	77	52	20	4	22	1.63
33194672--33194735	20	3.2	20	67	8	58	45	9	34	10	1.72
33196252--33196303	16	3.2	16	86	0	77	40	7	23	28	1.82
33201280--33201375	47	2.0	47	100	0	192	47	6	4	41	1.48
33207298--33207372	29	2.6	29	84	0	96	25	14	21	38	1.91
33207634--33207729	51	1.9	50	97	2	183	34	4	19	41	1.71
33210795--33210902	20	5.4	20	73	8	85	38	20	28	12	1.88
33210790--33210911	40	3.0	40	71	13	124	39	18	27	15	1.90
33212821--33212996	40	4.3	40	73	11	142	23	13	28	34	1.93
33217682--33217747	29	2.3	29	91	0	105	37	12	25	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33226171--33227288	556	2.0	556	97	0	2101	34	19	11	33	1.88
33227495--33227724	58	4.1	58	85	8	314	27	24	15	32	1.95
33227591--33227622	7	4.6	7	96	0	55	15	34	12	37	1.85
33227648--33227685	14	2.7	14	87	0	58	23	28	7	39	1.83
33242363--33242664	152	2.0	149	98	1	577	42	19	9	28	1.83
33243965--33244029	24	2.7	24	78	4	69	21	13	24	40	1.90
33244822--33244882	31	2.0	31	100	0	122	40	6	19	32	1.77
33249614--33249683	30	2.3	30	82	0	95	27	25	12	34	1.92
33250919--33250985	30	2.2	30	89	0	98	32	16	25	25	1.96
33251753--33252146	125	3.2	124	94	2	657	30	15	22	31	1.95
33255355--33255571	29	7.6	29	87	1	312	32	0	21	45	1.58
33256735--33256773	7	5.6	7	100	0	78	58	12	0	28	1.34
33257731--33257764	15	2.3	15	90	5	52	67	5	0	26	1.13
33257862--33257924	28	2.2	28	88	5	92	55	1	1	41	1.19
33257952--33258002	22	2.3	21	83	9	66	33	0	33	33	1.58
33258007--33258057	22	2.3	22	100	0	102	47	0	31	21	1.51
33259631--33259656	11	2.4	11	100	0	52	84	7	0	7	0.77
33263055--33263159	42	2.5	42	85	0	138	19	41	20	19	1.90
33263079--33263172	42	2.2	42	86	0	125	15	40	24	19	1.90
33266132--33266174	11	4.1	11	76	11	54	20	37	0	41	1.53
33269207--33269231	13	1.9	13	100	0	50	8	0	24	68	1.16
33270813--33270914	41	2.5	41	90	3	152	27	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33272528--33272604	38	2.0	38	94	0	136	46	16	16	19	1.84
33274087--33274176	45	2.0	46	91	6	148	28	5	0	65	1.15
33274087--33274191	45	2.4	43	81	15	117	26	6	0	66	1.16
33289061--33289250	104	1.8	105	93	2	330	45	11	11	31	1.75
33299461--33299583	27	4.6	27	75	4	113	32	18	23	25	1.97
33299461--33299579	54	2.2	54	83	3	141	32	19	24	23	1.97
33299481--33299607	27	4.7	27	75	7	96	34	18	22	24	1.96
33299451--33299606	81	1.9	81	82	0	195	32	17	24	25	1.97
33299481--33299635	81	1.9	81	80	5	179	32	18	24	24	1.97
33300899--33301040	28	5.1	28	79	0	149	30	17	19	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226