genome.fa.s24.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D11
Parameters: 2 7 7 80 10 50 1000
Length:  68311261

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   

This is table  164  of  226  ( 27070 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50716717--50717159	231	1.9	231	81	7	542	26	31	6	35	1.81
50717669--50717705	7	5.3	7	100	0	74	72	0	0	27	0.84
50717738--50717773	18	1.9	19	88	5	56	38	8	47	5	1.57
50719122--50719154	16	2.0	17	94	5	59	18	33	0	48	1.48
50719235--50719265	16	1.9	16	100	0	62	45	6	3	45	1.45
50719236--50719273	18	2.2	18	86	9	53	50	2	5	42	1.39
50720877--50720928	24	2.2	24	86	6	70	42	13	9	34	1.77
50729519--50729780	40	6.6	40	88	3	307	24	20	27	26	1.99
50729519--50729780	79	3.3	80	84	3	307	24	20	27	26	1.99
50729519--50729780	119	2.2	120	82	4	316	24	20	27	26	1.99
50729572--50729815	79	3.1	80	85	2	244	25	20	28	25	1.99
50729520--50729815	119	2.5	119	80	4	296	25	20	28	25	1.99
50737538--50737737	38	5.1	40	84	9	232	24	20	27	28	1.99
50743972--50744015	23	1.9	23	86	9	63	13	20	0	65	1.26
50748049--50748229	45	4.2	44	80	13	198	27	27	18	27	1.98
50748071--50748229	45	3.6	45	85	5	220	28	27	18	25	1.98
50750575--50750681	49	2.3	47	82	7	130	46	8	17	27	1.77
50753574--50753607	16	2.1	16	88	0	50	76	0	0	23	0.79
50760199--50760249	25	2.0	26	92	3	86	35	21	3	39	1.72
50762731--50762782	24	2.2	24	96	0	95	32	9	13	44	1.76
50765161--50765215	17	3.1	18	86	7	67	38	0	0	61	0.96
50765136--50765215	9	8.8	9	78	13	65	40	1	0	58	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50765184--50765215	10	3.3	10	91	8	57	37	0	0	62	0.95
50765176--50765215	19	2.1	19	95	0	71	37	0	0	62	0.95
50768356--50768711	27	13.3	26	84	6	365	41	20	16	21	1.90
50768379--50768684	81	3.8	81	87	4	417	42	19	16	20	1.90
50768917--50768993	26	3.0	26	82	3	93	16	22	25	35	1.95
50769099--50769221	28	4.4	28	78	5	133	22	20	22	34	1.97
50772518--50772785	40	6.7	40	95	0	473	30	20	26	21	1.98
50779642--50779685	3	14.7	3	100	0	88	31	0	0	68	0.90
50779810--50779843	16	2.1	16	94	0	59	44	11	2	41	1.56
50779958--50780029	24	3.1	23	78	7	74	36	6	2	54	1.42
50784269--50784308	14	2.9	14	82	14	55	82	0	17	0	0.67
50784275--50784308	16	2.1	17	88	5	52	82	0	17	0	0.67
50784926--50784986	27	2.3	26	75	13	61	49	1	3	45	1.28
50788883--50788908	13	2.0	13	100	0	52	46	7	7	38	1.61
50791133--50791315	69	2.7	69	82	2	208	35	22	19	22	1.96
50791328--50791549	58	3.8	59	80	4	229	27	22	14	35	1.93
50795670--50795815	37	3.9	37	95	0	238	26	30	18	23	1.98
50796027--50796366	47	7.1	47	87	4	437	26	29	12	31	1.93
50801600--50801686	43	2.0	43	97	0	165	43	8	33	14	1.75
50803731--50803764	17	2.0	17	94	0	59	23	14	8	52	1.69
50804289--50804474	73	2.5	73	95	0	345	29	6	23	40	1.79
50806774--50806820	21	2.2	21	77	7	51	68	4	0	27	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50813100--50813130	15	2.1	15	93	0	53	54	6	0	38	1.26
50813239--50813292	23	2.3	23	75	12	56	46	0	1	51	1.11
50813460--50813489	7	4.3	7	100	0	60	13	13	0	73	1.10
50813956--50813989	13	2.6	13	85	0	50	38	5	5	50	1.51
50817801--50817908	25	4.4	25	76	19	111	32	20	24	23	1.98
50820472--50820504	16	2.1	16	100	0	66	45	6	18	30	1.73
50828712--50828775	27	2.4	26	82	5	83	35	12	9	42	1.75
50828919--50828943	12	2.1	12	100	0	50	16	24	0	60	1.36
50831301--50831349	25	1.9	26	87	4	73	38	10	6	44	1.63
50832689--50832720	13	2.4	14	89	10	57	59	25	0	15	1.36
50834730--50834767	20	1.9	20	94	0	67	13	36	21	28	1.91
50835955--50836075	41	3.0	41	83	2	154	33	14	29	23	1.93
50835994--50836060	20	3.3	20	64	4	53	35	13	31	19	1.90
50838552--50838593	9	4.6	9	86	13	59	54	21	2	21	1.56
50838561--50838594	14	2.4	15	90	9	54	55	20	2	20	1.56
50842493--50842569	37	2.1	37	79	16	88	54	3	0	41	1.19
50844119--50844150	15	2.1	15	94	0	55	65	6	15	12	1.44
50844538--50844698	29	5.6	29	67	16	93	19	14	29	36	1.92
50844601--50844720	58	2.1	58	81	6	136	19	16	27	36	1.93
50847976--50848017	21	2.0	21	81	9	50	45	7	4	42	1.52
50849430--50849607	27	6.6	27	80	3	160	28	29	15	26	1.96
50849451--50849606	82	1.9	81	85	3	215	27	29	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50856618--50856663	20	2.5	19	83	13	60	63	6	8	21	1.46
50861193--50861253	30	2.0	30	84	12	81	34	3	1	60	1.23
50870730--50870766	6	6.0	6	87	6	56	78	2	2	16	0.98
50875031--50875072	21	2.0	21	95	0	75	21	14	16	47	1.82
50877171--50877221	21	2.4	21	86	0	75	27	7	33	31	1.85
50891041--50891078	16	2.3	17	86	9	60	60	0	2	36	1.11
50891073--50891155	31	2.7	31	80	12	91	37	4	2	55	1.34
50902180--50902212	16	2.1	16	88	5	50	45	3	0	51	1.16
50902519--50902545	10	2.7	10	100	0	54	22	33	11	33	1.89
50908281--50908377	25	3.9	24	75	18	92	19	23	24	31	1.98
50908274--50908383	50	2.2	48	84	10	134	20	22	24	32	1.97
50909534--50909563	12	2.5	12	94	0	51	23	43	26	6	1.78
50912432--50912476	6	7.2	6	80	9	54	73	0	0	26	0.84
50912428--50912487	20	3.0	20	85	4	77	70	1	1	26	1.07
50922087--50922155	27	2.5	28	90	6	106	39	10	1	49	1.46
50922223--50922299	27	2.9	27	92	0	118	25	28	28	16	1.97
50922224--50922315	27	3.4	26	81	14	98	25	27	29	18	1.98
50922442--50922480	19	2.0	21	85	10	55	23	0	10	66	1.22
50922553--50922599	3	15.7	3	100	0	94	0	0	31	68	0.90
50922602--50922646	19	2.2	21	88	7	67	44	2	8	44	1.47
50925695--50925762	33	2.1	33	88	5	102	38	10	11	39	1.76
50928722--50928792	30	2.4	31	75	15	80	0	29	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50928787--50928913	4	31.0	4	71	20	77	0	31	0	68	0.90
50928753--50928901	79	1.9	77	90	8	239	0	31	0	68	0.90
50928753--50928901	40	3.8	40	82	15	172	0	31	0	68	0.90
50928733--50928914	18	10.1	18	68	22	89	0	32	0	67	0.91
50928838--50928924	22	4.4	18	73	19	57	0	34	0	65	0.93
50929061--50929126	29	2.3	29	89	5	100	51	1	7	39	1.40
50932546--50932603	22	2.6	22	81	7	64	41	17	5	36	1.72
50934240--50934275	17	2.1	17	89	0	54	61	0	36	2	1.11
50934880--50934925	23	2.0	24	91	4	76	26	23	4	45	1.71
50936144--50936192	25	1.9	25	83	4	62	44	14	12	28	1.81
50936163--50936489	76	4.2	77	90	3	444	49	25	6	18	1.71
50936163--50936489	153	2.1	157	86	5	450	49	25	6	18	1.71
50938489--50938672	41	4.5	41	91	5	300	28	19	20	32	1.96
50938489--50938716	123	1.9	120	81	12	275	28	20	20	31	1.97
50938489--50938703	82	2.6	82	87	2	254	27	20	20	32	1.97
50939217--50940207	493	2.0	494	99	0	1957	27	12	13	45	1.80
50943144--50943229	28	3.2	27	77	11	77	58	17	3	20	1.54
50943199--50943235	16	2.2	17	95	4	67	59	24	0	16	1.37
50943635--50943675	21	2.0	21	90	0	64	29	29	19	21	1.98
50949031--50949082	3	17.0	3	88	4	77	63	1	3	30	1.23
50955401--50955615	113	1.9	111	86	1	304	40	15	14	29	1.86
50956025--50956054	6	5.0	6	100	0	60	16	0	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50956970--50957009	14	2.9	14	84	0	53	42	17	7	32	1.77
50959459--50959485	9	3.0	9	100	0	54	11	0	0	88	0.50
50961786--50961903	43	2.8	41	78	8	114	21	24	28	25	1.99
50961910--50962183	43	6.3	43	72	6	214	31	29	16	22	1.96
50961889--50962163	86	3.2	86	83	2	327	27	29	16	26	1.97
50962049--50962208	86	1.9	86	83	0	212	28	28	16	26	1.97
50962529--50962641	21	5.4	21	81	0	127	5	40	18	35	1.73
50962529--50962662	42	3.2	42	76	0	133	5	39	18	36	1.73
50962633--50962798	66	2.5	66	84	3	201	13	28	18	40	1.88
50965225--50965426	9	24.2	9	69	15	96	37	2	15	44	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226